data_4CDO # _entry.id 4CDO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4CDO PDBE EBI-58871 WWPDB D_1290058871 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4CDO _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-11-05 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mizuguchi, M.' 1 'Obita, T.' 2 'Serita, T.' 3 'Kojima, R.' 4 'Nabeshima, Y.' 5 'Okazawa, H.' 6 # _citation.id primary _citation.title 'Mutations in the Pqbp1 Gene Prevent its Interaction with the Spliceosomal Protein U5-15Kd.' _citation.journal_abbrev Nat.Commun. _citation.journal_volume 5 _citation.page_first 3822 _citation.page_last ? _citation.year 2014 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 2041-1723 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24781215 _citation.pdbx_database_id_DOI 10.1038/NCOMMS4822 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Mizuguchi, M.' 1 primary 'Obita, T.' 2 primary 'Serita, T.' 3 primary 'Kojima, R.' 4 primary 'Nabeshima, Y.' 5 primary 'Okazawa, H.' 6 # _cell.entry_id 4CDO _cell.length_a 59.360 _cell.length_b 53.700 _cell.length_c 66.190 _cell.angle_alpha 90.00 _cell.angle_beta 89.95 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CDO _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'THIOREDOXIN-LIKE PROTEIN 4A, POLYGLUTAMINE-BINDING PROTEIN' 21331.283 2 ? ? 'RESIDUES 4-137,223-265' ? 2 water nat water 18.015 43 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;DIM1 PROTEIN HOMOLOG, SPLICEOSOMAL U5 SNRNP-SPECIFIC 15 KDA PROTEIN, THIOREDOXIN-LIKE U5 SNRNP PROTEIN U5-15KD, PQBP-1,38 KDA NUCLEAR PROTEIN CONTAINING A WW DOMAIN, NPW38, POLYGLUTAMINE TRACT-BINDING PROTEIN 1 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MAHHHHHHMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYEL YDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSKRNEAKTGADTTAAGPLF QQRPYPSPGAVLRANAEASRTKQQD ; _entity_poly.pdbx_seq_one_letter_code_can ;MAHHHHHHMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYEL YDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSKRNEAKTGADTTAAGPLF QQRPYPSPGAVLRANAEASRTKQQD ; _entity_poly.pdbx_strand_id A,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 MET n 1 10 LEU n 1 11 PRO n 1 12 HIS n 1 13 LEU n 1 14 HIS n 1 15 ASN n 1 16 GLY n 1 17 TRP n 1 18 GLN n 1 19 VAL n 1 20 ASP n 1 21 GLN n 1 22 ALA n 1 23 ILE n 1 24 LEU n 1 25 SER n 1 26 GLU n 1 27 GLU n 1 28 ASP n 1 29 ARG n 1 30 VAL n 1 31 VAL n 1 32 VAL n 1 33 ILE n 1 34 ARG n 1 35 PHE n 1 36 GLY n 1 37 HIS n 1 38 ASP n 1 39 TRP n 1 40 ASP n 1 41 PRO n 1 42 THR n 1 43 CYS n 1 44 MET n 1 45 LYS n 1 46 MET n 1 47 ASP n 1 48 GLU n 1 49 VAL n 1 50 LEU n 1 51 TYR n 1 52 SER n 1 53 ILE n 1 54 ALA n 1 55 GLU n 1 56 LYS n 1 57 VAL n 1 58 LYS n 1 59 ASN n 1 60 PHE n 1 61 ALA n 1 62 VAL n 1 63 ILE n 1 64 TYR n 1 65 LEU n 1 66 VAL n 1 67 ASP n 1 68 ILE n 1 69 THR n 1 70 GLU n 1 71 VAL n 1 72 PRO n 1 73 ASP n 1 74 PHE n 1 75 ASN n 1 76 LYS n 1 77 MET n 1 78 TYR n 1 79 GLU n 1 80 LEU n 1 81 TYR n 1 82 ASP n 1 83 PRO n 1 84 CYS n 1 85 THR n 1 86 VAL n 1 87 MET n 1 88 PHE n 1 89 PHE n 1 90 PHE n 1 91 ARG n 1 92 ASN n 1 93 LYS n 1 94 HIS n 1 95 ILE n 1 96 MET n 1 97 ILE n 1 98 ASP n 1 99 LEU n 1 100 GLY n 1 101 THR n 1 102 GLY n 1 103 ASN n 1 104 ASN n 1 105 ASN n 1 106 LYS n 1 107 ILE n 1 108 ASN n 1 109 TRP n 1 110 ALA n 1 111 MET n 1 112 GLU n 1 113 ASP n 1 114 LYS n 1 115 GLN n 1 116 GLU n 1 117 MET n 1 118 VAL n 1 119 ASP n 1 120 ILE n 1 121 ILE n 1 122 GLU n 1 123 THR n 1 124 VAL n 1 125 TYR n 1 126 ARG n 1 127 GLY n 1 128 ALA n 1 129 ARG n 1 130 LYS n 1 131 GLY n 1 132 ARG n 1 133 GLY n 1 134 LEU n 1 135 VAL n 1 136 VAL n 1 137 SER n 1 138 PRO n 1 139 LYS n 1 140 ASP n 1 141 TYR n 1 142 SER n 1 143 LYS n 1 144 ARG n 1 145 ASN n 1 146 GLU n 1 147 ALA n 1 148 LYS n 1 149 THR n 1 150 GLY n 1 151 ALA n 1 152 ASP n 1 153 THR n 1 154 THR n 1 155 ALA n 1 156 ALA n 1 157 GLY n 1 158 PRO n 1 159 LEU n 1 160 PHE n 1 161 GLN n 1 162 GLN n 1 163 ARG n 1 164 PRO n 1 165 TYR n 1 166 PRO n 1 167 SER n 1 168 PRO n 1 169 GLY n 1 170 ALA n 1 171 VAL n 1 172 LEU n 1 173 ARG n 1 174 ALA n 1 175 ASN n 1 176 ALA n 1 177 GLU n 1 178 ALA n 1 179 SER n 1 180 ARG n 1 181 THR n 1 182 LYS n 1 183 GLN n 1 184 GLN n 1 185 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant C41 _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector POPTH _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP TXN4A_HUMAN 1 ? ? P83876 ? 2 UNP PQBP1_HUMAN 1 ? ? O60828 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4CDO A 9 ? 142 ? P83876 4 ? 137 ? 4 137 2 2 4CDO A 143 ? 185 ? O60828 223 ? 265 ? 223 265 3 1 4CDO C 9 ? 142 ? P83876 4 ? 137 ? 4 137 4 2 4CDO C 143 ? 185 ? O60828 223 ? 265 ? 223 265 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4CDO MET A 1 ? UNP P83876 ? ? 'expression tag' -4 1 1 4CDO ALA A 2 ? UNP P83876 ? ? 'expression tag' -3 2 1 4CDO HIS A 3 ? UNP P83876 ? ? 'expression tag' -2 3 1 4CDO HIS A 4 ? UNP P83876 ? ? 'expression tag' -1 4 1 4CDO HIS A 5 ? UNP P83876 ? ? 'expression tag' 0 5 1 4CDO HIS A 6 ? UNP P83876 ? ? 'expression tag' 1 6 1 4CDO HIS A 7 ? UNP P83876 ? ? 'expression tag' 2 7 1 4CDO HIS A 8 ? UNP P83876 ? ? 'expression tag' 3 8 3 4CDO MET C 1 ? UNP P83876 ? ? 'expression tag' -4 9 3 4CDO ALA C 2 ? UNP P83876 ? ? 'expression tag' -3 10 3 4CDO HIS C 3 ? UNP P83876 ? ? 'expression tag' -2 11 3 4CDO HIS C 4 ? UNP P83876 ? ? 'expression tag' -1 12 3 4CDO HIS C 5 ? UNP P83876 ? ? 'expression tag' 0 13 3 4CDO HIS C 6 ? UNP P83876 ? ? 'expression tag' 1 14 3 4CDO HIS C 7 ? UNP P83876 ? ? 'expression tag' 2 15 3 4CDO HIS C 8 ? UNP P83876 ? ? 'expression tag' 3 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4CDO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.64 _exptl_crystal.density_percent_sol 53.4 _exptl_crystal.description NONE # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2011-12-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL41XU' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL41XU _diffrn_source.pdbx_wavelength 1 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4CDO _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 39.82 _reflns.d_resolution_high 2.50 _reflns.number_obs 14640 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.16 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 29.80 _reflns.pdbx_redundancy 3.8 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.64 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.64 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 3.8 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4CDO _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 14622 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.095 _refine.ls_d_res_high 2.500 _refine.ls_percent_reflns_obs 99.96 _refine.ls_R_factor_obs 0.1895 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1868 _refine.ls_R_factor_R_free 0.2382 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 736 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.23 _refine.pdbx_overall_phase_error 23.89 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2418 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 43 _refine_hist.number_atoms_total 2461 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 33.095 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.008 ? ? 2476 'X-RAY DIFFRACTION' ? f_angle_d 1.054 ? ? 3352 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 15.147 ? ? 920 'X-RAY DIFFRACTION' ? f_chiral_restr 0.072 ? ? 361 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 431 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.5003 2.6933 2736 0.2154 100.00 0.3097 . . 155 . . 'X-RAY DIFFRACTION' . 2.6933 2.9642 2798 0.2093 100.00 0.2708 . . 140 . . 'X-RAY DIFFRACTION' . 2.9642 3.3927 2758 0.1937 100.00 0.2378 . . 129 . . 'X-RAY DIFFRACTION' . 3.3927 4.2730 2750 0.1713 100.00 0.2103 . . 160 . . 'X-RAY DIFFRACTION' . 4.2730 33.0980 2844 0.1773 100.00 0.2296 . . 152 . . # _struct.entry_id 4CDO _struct.title 'Crystal structure of PQBP1 bound to spliceosomal U5-15kD' _struct.pdbx_descriptor 'THIOREDOXIN-LIKE PROTEIN 4A, POLYGLUTAMINE-BINDING PROTEIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4CDO _struct_keywords.pdbx_keywords 'CELL CYCLE' _struct_keywords.text 'CELL CYCLE, U5-52KD' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 15 ? SER A 25 ? ASN A 10 SER A 20 1 ? 11 HELX_P HELX_P2 2 ASP A 40 ? ALA A 54 ? ASP A 35 ALA A 49 1 ? 15 HELX_P HELX_P3 3 ASP A 113 ? LYS A 130 ? ASP A 108 LYS A 125 1 ? 18 HELX_P HELX_P4 4 SER A 167 ? SER A 179 ? SER A 247 SER A 259 1 ? 13 HELX_P HELX_P5 5 ASN B 15 ? SER B 25 ? ASN C 10 SER C 20 1 ? 11 HELX_P HELX_P6 6 ASP B 40 ? ALA B 54 ? ASP C 35 ALA C 49 1 ? 15 HELX_P HELX_P7 7 ASP B 113 ? LYS B 130 ? ASP C 108 LYS C 125 1 ? 18 HELX_P HELX_P8 8 SER B 167 ? SER B 179 ? SER C 247 SER C 259 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 5 ? AB ? 2 ? CA ? 5 ? CB ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AB 1 2 ? parallel CA 1 2 ? parallel CA 2 3 ? parallel CA 3 4 ? anti-parallel CA 4 5 ? anti-parallel CB 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 HIS A 12 ? LEU A 13 ? HIS A 7 LEU A 8 AA 2 ALA A 61 ? ASP A 67 ? ALA A 56 ASP A 62 AA 3 VAL A 30 ? GLY A 36 ? VAL A 25 GLY A 31 AA 4 THR A 85 ? PHE A 90 ? THR A 80 PHE A 85 AA 5 LYS A 93 ? HIS A 94 ? LYS A 88 HIS A 89 AB 1 MET A 96 ? ASP A 98 ? MET A 91 ASP A 93 AB 2 LEU A 134 ? VAL A 136 ? LEU A 129 VAL A 131 CA 1 HIS B 12 ? LEU B 13 ? HIS C 7 LEU C 8 CA 2 ALA B 61 ? ASP B 67 ? ALA C 56 ASP C 62 CA 3 VAL B 30 ? GLY B 36 ? VAL C 25 GLY C 31 CA 4 THR B 85 ? PHE B 90 ? THR C 80 PHE C 85 CA 5 LYS B 93 ? HIS B 94 ? LYS C 88 HIS C 89 CB 1 MET B 96 ? ASP B 98 ? MET C 91 ASP C 93 CB 2 LEU B 134 ? VAL B 136 ? LEU C 129 VAL C 131 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LEU A 13 ? N LEU A 8 O LEU A 65 ? O LEU A 60 AA 2 3 N VAL A 62 ? N VAL A 57 O VAL A 30 ? O VAL A 25 AA 3 4 N PHE A 35 ? N PHE A 30 O THR A 85 ? O THR A 80 AA 4 5 N PHE A 90 ? N PHE A 85 O LYS A 93 ? O LYS A 88 AB 1 2 N ASP A 98 ? N ASP A 93 O VAL A 135 ? O VAL A 130 CA 1 2 N LEU B 13 ? N LEU C 8 O LEU B 65 ? O LEU C 60 CA 2 3 N VAL B 62 ? N VAL C 57 O VAL B 30 ? O VAL C 25 CA 3 4 N PHE B 35 ? N PHE C 30 O THR B 85 ? O THR C 80 CA 4 5 N PHE B 90 ? N PHE C 85 O LYS B 93 ? O LYS C 88 CB 1 2 N ASP B 98 ? N ASP C 93 O VAL B 135 ? O VAL C 130 # _database_PDB_matrix.entry_id 4CDO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4CDO _atom_sites.fract_transf_matrix[1][1] 0.016846 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] -0.000015 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018622 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015108 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -4 ? ? ? A . n A 1 2 ALA 2 -3 ? ? ? A . n A 1 3 HIS 3 -2 ? ? ? A . n A 1 4 HIS 4 -1 ? ? ? A . n A 1 5 HIS 5 0 ? ? ? A . n A 1 6 HIS 6 1 ? ? ? A . n A 1 7 HIS 7 2 ? ? ? A . n A 1 8 HIS 8 3 ? ? ? A . n A 1 9 MET 9 4 4 MET MET A . n A 1 10 LEU 10 5 5 LEU LEU A . n A 1 11 PRO 11 6 6 PRO PRO A . n A 1 12 HIS 12 7 7 HIS HIS A . n A 1 13 LEU 13 8 8 LEU LEU A . n A 1 14 HIS 14 9 9 HIS HIS A . n A 1 15 ASN 15 10 10 ASN ASN A . n A 1 16 GLY 16 11 11 GLY GLY A . n A 1 17 TRP 17 12 12 TRP TRP A . n A 1 18 GLN 18 13 13 GLN GLN A . n A 1 19 VAL 19 14 14 VAL VAL A . n A 1 20 ASP 20 15 15 ASP ASP A . n A 1 21 GLN 21 16 16 GLN GLN A . n A 1 22 ALA 22 17 17 ALA ALA A . n A 1 23 ILE 23 18 18 ILE ILE A . n A 1 24 LEU 24 19 19 LEU LEU A . n A 1 25 SER 25 20 20 SER SER A . n A 1 26 GLU 26 21 21 GLU GLU A . n A 1 27 GLU 27 22 22 GLU GLU A . n A 1 28 ASP 28 23 23 ASP ASP A . n A 1 29 ARG 29 24 24 ARG ARG A . n A 1 30 VAL 30 25 25 VAL VAL A . n A 1 31 VAL 31 26 26 VAL VAL A . n A 1 32 VAL 32 27 27 VAL VAL A . n A 1 33 ILE 33 28 28 ILE ILE A . n A 1 34 ARG 34 29 29 ARG ARG A . n A 1 35 PHE 35 30 30 PHE PHE A . n A 1 36 GLY 36 31 31 GLY GLY A . n A 1 37 HIS 37 32 32 HIS HIS A . n A 1 38 ASP 38 33 33 ASP ASP A . n A 1 39 TRP 39 34 34 TRP TRP A . n A 1 40 ASP 40 35 35 ASP ASP A . n A 1 41 PRO 41 36 36 PRO PRO A . n A 1 42 THR 42 37 37 THR THR A . n A 1 43 CYS 43 38 38 CYS CYS A . n A 1 44 MET 44 39 39 MET MET A . n A 1 45 LYS 45 40 40 LYS LYS A . n A 1 46 MET 46 41 41 MET MET A . n A 1 47 ASP 47 42 42 ASP ASP A . n A 1 48 GLU 48 43 43 GLU GLU A . n A 1 49 VAL 49 44 44 VAL VAL A . n A 1 50 LEU 50 45 45 LEU LEU A . n A 1 51 TYR 51 46 46 TYR TYR A . n A 1 52 SER 52 47 47 SER SER A . n A 1 53 ILE 53 48 48 ILE ILE A . n A 1 54 ALA 54 49 49 ALA ALA A . n A 1 55 GLU 55 50 50 GLU GLU A . n A 1 56 LYS 56 51 51 LYS LYS A . n A 1 57 VAL 57 52 52 VAL VAL A . n A 1 58 LYS 58 53 53 LYS LYS A . n A 1 59 ASN 59 54 54 ASN ASN A . n A 1 60 PHE 60 55 55 PHE PHE A . n A 1 61 ALA 61 56 56 ALA ALA A . n A 1 62 VAL 62 57 57 VAL VAL A . n A 1 63 ILE 63 58 58 ILE ILE A . n A 1 64 TYR 64 59 59 TYR TYR A . n A 1 65 LEU 65 60 60 LEU LEU A . n A 1 66 VAL 66 61 61 VAL VAL A . n A 1 67 ASP 67 62 62 ASP ASP A . n A 1 68 ILE 68 63 63 ILE ILE A . n A 1 69 THR 69 64 64 THR THR A . n A 1 70 GLU 70 65 65 GLU GLU A . n A 1 71 VAL 71 66 66 VAL VAL A . n A 1 72 PRO 72 67 67 PRO PRO A . n A 1 73 ASP 73 68 68 ASP ASP A . n A 1 74 PHE 74 69 69 PHE PHE A . n A 1 75 ASN 75 70 70 ASN ASN A . n A 1 76 LYS 76 71 71 LYS LYS A . n A 1 77 MET 77 72 72 MET MET A . n A 1 78 TYR 78 73 73 TYR TYR A . n A 1 79 GLU 79 74 74 GLU GLU A . n A 1 80 LEU 80 75 75 LEU LEU A . n A 1 81 TYR 81 76 76 TYR TYR A . n A 1 82 ASP 82 77 77 ASP ASP A . n A 1 83 PRO 83 78 78 PRO PRO A . n A 1 84 CYS 84 79 79 CYS CYS A . n A 1 85 THR 85 80 80 THR THR A . n A 1 86 VAL 86 81 81 VAL VAL A . n A 1 87 MET 87 82 82 MET MET A . n A 1 88 PHE 88 83 83 PHE PHE A . n A 1 89 PHE 89 84 84 PHE PHE A . n A 1 90 PHE 90 85 85 PHE PHE A . n A 1 91 ARG 91 86 86 ARG ARG A . n A 1 92 ASN 92 87 87 ASN ASN A . n A 1 93 LYS 93 88 88 LYS LYS A . n A 1 94 HIS 94 89 89 HIS HIS A . n A 1 95 ILE 95 90 90 ILE ILE A . n A 1 96 MET 96 91 91 MET MET A . n A 1 97 ILE 97 92 92 ILE ILE A . n A 1 98 ASP 98 93 93 ASP ASP A . n A 1 99 LEU 99 94 94 LEU LEU A . n A 1 100 GLY 100 95 95 GLY GLY A . n A 1 101 THR 101 96 96 THR THR A . n A 1 102 GLY 102 97 97 GLY GLY A . n A 1 103 ASN 103 98 98 ASN ASN A . n A 1 104 ASN 104 99 99 ASN ASN A . n A 1 105 ASN 105 100 100 ASN ASN A . n A 1 106 LYS 106 101 101 LYS LYS A . n A 1 107 ILE 107 102 102 ILE ILE A . n A 1 108 ASN 108 103 103 ASN ASN A . n A 1 109 TRP 109 104 104 TRP TRP A . n A 1 110 ALA 110 105 105 ALA ALA A . n A 1 111 MET 111 106 106 MET MET A . n A 1 112 GLU 112 107 107 GLU GLU A . n A 1 113 ASP 113 108 108 ASP ASP A . n A 1 114 LYS 114 109 109 LYS LYS A . n A 1 115 GLN 115 110 110 GLN GLN A . n A 1 116 GLU 116 111 111 GLU GLU A . n A 1 117 MET 117 112 112 MET MET A . n A 1 118 VAL 118 113 113 VAL VAL A . n A 1 119 ASP 119 114 114 ASP ASP A . n A 1 120 ILE 120 115 115 ILE ILE A . n A 1 121 ILE 121 116 116 ILE ILE A . n A 1 122 GLU 122 117 117 GLU GLU A . n A 1 123 THR 123 118 118 THR THR A . n A 1 124 VAL 124 119 119 VAL VAL A . n A 1 125 TYR 125 120 120 TYR TYR A . n A 1 126 ARG 126 121 121 ARG ARG A . n A 1 127 GLY 127 122 122 GLY GLY A . n A 1 128 ALA 128 123 123 ALA ALA A . n A 1 129 ARG 129 124 124 ARG ARG A . n A 1 130 LYS 130 125 125 LYS LYS A . n A 1 131 GLY 131 126 126 GLY GLY A . n A 1 132 ARG 132 127 127 ARG ARG A . n A 1 133 GLY 133 128 128 GLY GLY A . n A 1 134 LEU 134 129 129 LEU LEU A . n A 1 135 VAL 135 130 130 VAL VAL A . n A 1 136 VAL 136 131 131 VAL VAL A . n A 1 137 SER 137 132 132 SER SER A . n A 1 138 PRO 138 133 133 PRO PRO A . n A 1 139 LYS 139 134 134 LYS LYS A . n A 1 140 ASP 140 135 135 ASP ASP A . n A 1 141 TYR 141 136 136 TYR TYR A . n A 1 142 SER 142 137 137 SER SER A . n A 1 143 LYS 143 223 ? ? ? A . n A 1 144 ARG 144 224 ? ? ? A . n A 1 145 ASN 145 225 ? ? ? A . n A 1 146 GLU 146 226 ? ? ? A . n A 1 147 ALA 147 227 ? ? ? A . n A 1 148 LYS 148 228 ? ? ? A . n A 1 149 THR 149 229 ? ? ? A . n A 1 150 GLY 150 230 ? ? ? A . n A 1 151 ALA 151 231 ? ? ? A . n A 1 152 ASP 152 232 ? ? ? A . n A 1 153 THR 153 233 ? ? ? A . n A 1 154 THR 154 234 ? ? ? A . n A 1 155 ALA 155 235 ? ? ? A . n A 1 156 ALA 156 236 ? ? ? A . n A 1 157 GLY 157 237 ? ? ? A . n A 1 158 PRO 158 238 ? ? ? A . n A 1 159 LEU 159 239 ? ? ? A . n A 1 160 PHE 160 240 ? ? ? A . n A 1 161 GLN 161 241 ? ? ? A . n A 1 162 GLN 162 242 ? ? ? A . n A 1 163 ARG 163 243 ? ? ? A . n A 1 164 PRO 164 244 244 PRO PRO A . n A 1 165 TYR 165 245 245 TYR TYR A . n A 1 166 PRO 166 246 246 PRO PRO A . n A 1 167 SER 167 247 247 SER SER A . n A 1 168 PRO 168 248 248 PRO PRO A . n A 1 169 GLY 169 249 249 GLY GLY A . n A 1 170 ALA 170 250 250 ALA ALA A . n A 1 171 VAL 171 251 251 VAL VAL A . n A 1 172 LEU 172 252 252 LEU LEU A . n A 1 173 ARG 173 253 253 ARG ARG A . n A 1 174 ALA 174 254 254 ALA ALA A . n A 1 175 ASN 175 255 255 ASN ASN A . n A 1 176 ALA 176 256 256 ALA ALA A . n A 1 177 GLU 177 257 257 GLU GLU A . n A 1 178 ALA 178 258 258 ALA ALA A . n A 1 179 SER 179 259 259 SER SER A . n A 1 180 ARG 180 260 ? ? ? A . n A 1 181 THR 181 261 ? ? ? A . n A 1 182 LYS 182 262 ? ? ? A . n A 1 183 GLN 183 263 ? ? ? A . n A 1 184 GLN 184 264 ? ? ? A . n A 1 185 ASP 185 265 ? ? ? A . n B 1 1 MET 1 -4 ? ? ? C . n B 1 2 ALA 2 -3 ? ? ? C . n B 1 3 HIS 3 -2 ? ? ? C . n B 1 4 HIS 4 -1 ? ? ? C . n B 1 5 HIS 5 0 ? ? ? C . n B 1 6 HIS 6 1 ? ? ? C . n B 1 7 HIS 7 2 ? ? ? C . n B 1 8 HIS 8 3 ? ? ? C . n B 1 9 MET 9 4 4 MET MET C . n B 1 10 LEU 10 5 5 LEU LEU C . n B 1 11 PRO 11 6 6 PRO PRO C . n B 1 12 HIS 12 7 7 HIS HIS C . n B 1 13 LEU 13 8 8 LEU LEU C . n B 1 14 HIS 14 9 9 HIS HIS C . n B 1 15 ASN 15 10 10 ASN ASN C . n B 1 16 GLY 16 11 11 GLY GLY C . n B 1 17 TRP 17 12 12 TRP TRP C . n B 1 18 GLN 18 13 13 GLN GLN C . n B 1 19 VAL 19 14 14 VAL VAL C . n B 1 20 ASP 20 15 15 ASP ASP C . n B 1 21 GLN 21 16 16 GLN GLN C . n B 1 22 ALA 22 17 17 ALA ALA C . n B 1 23 ILE 23 18 18 ILE ILE C . n B 1 24 LEU 24 19 19 LEU LEU C . n B 1 25 SER 25 20 20 SER SER C . n B 1 26 GLU 26 21 21 GLU GLU C . n B 1 27 GLU 27 22 22 GLU GLU C . n B 1 28 ASP 28 23 23 ASP ASP C . n B 1 29 ARG 29 24 24 ARG ARG C . n B 1 30 VAL 30 25 25 VAL VAL C . n B 1 31 VAL 31 26 26 VAL VAL C . n B 1 32 VAL 32 27 27 VAL VAL C . n B 1 33 ILE 33 28 28 ILE ILE C . n B 1 34 ARG 34 29 29 ARG ARG C . n B 1 35 PHE 35 30 30 PHE PHE C . n B 1 36 GLY 36 31 31 GLY GLY C . n B 1 37 HIS 37 32 32 HIS HIS C . n B 1 38 ASP 38 33 33 ASP ASP C . n B 1 39 TRP 39 34 34 TRP TRP C . n B 1 40 ASP 40 35 35 ASP ASP C . n B 1 41 PRO 41 36 36 PRO PRO C . n B 1 42 THR 42 37 37 THR THR C . n B 1 43 CYS 43 38 38 CYS CYS C . n B 1 44 MET 44 39 39 MET MET C . n B 1 45 LYS 45 40 40 LYS LYS C . n B 1 46 MET 46 41 41 MET MET C . n B 1 47 ASP 47 42 42 ASP ASP C . n B 1 48 GLU 48 43 43 GLU GLU C . n B 1 49 VAL 49 44 44 VAL VAL C . n B 1 50 LEU 50 45 45 LEU LEU C . n B 1 51 TYR 51 46 46 TYR TYR C . n B 1 52 SER 52 47 47 SER SER C . n B 1 53 ILE 53 48 48 ILE ILE C . n B 1 54 ALA 54 49 49 ALA ALA C . n B 1 55 GLU 55 50 50 GLU GLU C . n B 1 56 LYS 56 51 51 LYS LYS C . n B 1 57 VAL 57 52 52 VAL VAL C . n B 1 58 LYS 58 53 53 LYS LYS C . n B 1 59 ASN 59 54 54 ASN ASN C . n B 1 60 PHE 60 55 55 PHE PHE C . n B 1 61 ALA 61 56 56 ALA ALA C . n B 1 62 VAL 62 57 57 VAL VAL C . n B 1 63 ILE 63 58 58 ILE ILE C . n B 1 64 TYR 64 59 59 TYR TYR C . n B 1 65 LEU 65 60 60 LEU LEU C . n B 1 66 VAL 66 61 61 VAL VAL C . n B 1 67 ASP 67 62 62 ASP ASP C . n B 1 68 ILE 68 63 63 ILE ILE C . n B 1 69 THR 69 64 64 THR THR C . n B 1 70 GLU 70 65 65 GLU GLU C . n B 1 71 VAL 71 66 66 VAL VAL C . n B 1 72 PRO 72 67 67 PRO PRO C . n B 1 73 ASP 73 68 68 ASP ASP C . n B 1 74 PHE 74 69 69 PHE PHE C . n B 1 75 ASN 75 70 70 ASN ASN C . n B 1 76 LYS 76 71 71 LYS LYS C . n B 1 77 MET 77 72 72 MET MET C . n B 1 78 TYR 78 73 73 TYR TYR C . n B 1 79 GLU 79 74 74 GLU GLU C . n B 1 80 LEU 80 75 75 LEU LEU C . n B 1 81 TYR 81 76 76 TYR TYR C . n B 1 82 ASP 82 77 77 ASP ASP C . n B 1 83 PRO 83 78 78 PRO PRO C . n B 1 84 CYS 84 79 79 CYS CYS C . n B 1 85 THR 85 80 80 THR THR C . n B 1 86 VAL 86 81 81 VAL VAL C . n B 1 87 MET 87 82 82 MET MET C . n B 1 88 PHE 88 83 83 PHE PHE C . n B 1 89 PHE 89 84 84 PHE PHE C . n B 1 90 PHE 90 85 85 PHE PHE C . n B 1 91 ARG 91 86 86 ARG ARG C . n B 1 92 ASN 92 87 87 ASN ASN C . n B 1 93 LYS 93 88 88 LYS LYS C . n B 1 94 HIS 94 89 89 HIS HIS C . n B 1 95 ILE 95 90 90 ILE ILE C . n B 1 96 MET 96 91 91 MET MET C . n B 1 97 ILE 97 92 92 ILE ILE C . n B 1 98 ASP 98 93 93 ASP ASP C . n B 1 99 LEU 99 94 94 LEU LEU C . n B 1 100 GLY 100 95 95 GLY GLY C . n B 1 101 THR 101 96 96 THR THR C . n B 1 102 GLY 102 97 97 GLY GLY C . n B 1 103 ASN 103 98 98 ASN ASN C . n B 1 104 ASN 104 99 99 ASN ASN C . n B 1 105 ASN 105 100 100 ASN ASN C . n B 1 106 LYS 106 101 101 LYS LYS C . n B 1 107 ILE 107 102 102 ILE ILE C . n B 1 108 ASN 108 103 103 ASN ASN C . n B 1 109 TRP 109 104 104 TRP TRP C . n B 1 110 ALA 110 105 105 ALA ALA C . n B 1 111 MET 111 106 106 MET MET C . n B 1 112 GLU 112 107 107 GLU GLU C . n B 1 113 ASP 113 108 108 ASP ASP C . n B 1 114 LYS 114 109 109 LYS LYS C . n B 1 115 GLN 115 110 110 GLN GLN C . n B 1 116 GLU 116 111 111 GLU GLU C . n B 1 117 MET 117 112 112 MET MET C . n B 1 118 VAL 118 113 113 VAL VAL C . n B 1 119 ASP 119 114 114 ASP ASP C . n B 1 120 ILE 120 115 115 ILE ILE C . n B 1 121 ILE 121 116 116 ILE ILE C . n B 1 122 GLU 122 117 117 GLU GLU C . n B 1 123 THR 123 118 118 THR THR C . n B 1 124 VAL 124 119 119 VAL VAL C . n B 1 125 TYR 125 120 120 TYR TYR C . n B 1 126 ARG 126 121 121 ARG ARG C . n B 1 127 GLY 127 122 122 GLY GLY C . n B 1 128 ALA 128 123 123 ALA ALA C . n B 1 129 ARG 129 124 124 ARG ARG C . n B 1 130 LYS 130 125 125 LYS LYS C . n B 1 131 GLY 131 126 126 GLY GLY C . n B 1 132 ARG 132 127 127 ARG ARG C . n B 1 133 GLY 133 128 128 GLY GLY C . n B 1 134 LEU 134 129 129 LEU LEU C . n B 1 135 VAL 135 130 130 VAL VAL C . n B 1 136 VAL 136 131 131 VAL VAL C . n B 1 137 SER 137 132 132 SER SER C . n B 1 138 PRO 138 133 133 PRO PRO C . n B 1 139 LYS 139 134 134 LYS LYS C . n B 1 140 ASP 140 135 135 ASP ASP C . n B 1 141 TYR 141 136 136 TYR TYR C . n B 1 142 SER 142 137 ? ? ? C . n B 1 143 LYS 143 223 ? ? ? C . n B 1 144 ARG 144 224 ? ? ? C . n B 1 145 ASN 145 225 ? ? ? C . n B 1 146 GLU 146 226 ? ? ? C . n B 1 147 ALA 147 227 ? ? ? C . n B 1 148 LYS 148 228 ? ? ? C . n B 1 149 THR 149 229 ? ? ? C . n B 1 150 GLY 150 230 ? ? ? C . n B 1 151 ALA 151 231 ? ? ? C . n B 1 152 ASP 152 232 ? ? ? C . n B 1 153 THR 153 233 ? ? ? C . n B 1 154 THR 154 234 ? ? ? C . n B 1 155 ALA 155 235 ? ? ? C . n B 1 156 ALA 156 236 ? ? ? C . n B 1 157 GLY 157 237 ? ? ? C . n B 1 158 PRO 158 238 ? ? ? C . n B 1 159 LEU 159 239 ? ? ? C . n B 1 160 PHE 160 240 ? ? ? C . n B 1 161 GLN 161 241 ? ? ? C . n B 1 162 GLN 162 242 ? ? ? C . n B 1 163 ARG 163 243 ? ? ? C . n B 1 164 PRO 164 244 244 PRO PRO C . n B 1 165 TYR 165 245 245 TYR TYR C . n B 1 166 PRO 166 246 246 PRO PRO C . n B 1 167 SER 167 247 247 SER SER C . n B 1 168 PRO 168 248 248 PRO PRO C . n B 1 169 GLY 169 249 249 GLY GLY C . n B 1 170 ALA 170 250 250 ALA ALA C . n B 1 171 VAL 171 251 251 VAL VAL C . n B 1 172 LEU 172 252 252 LEU LEU C . n B 1 173 ARG 173 253 253 ARG ARG C . n B 1 174 ALA 174 254 254 ALA ALA C . n B 1 175 ASN 175 255 255 ASN ASN C . n B 1 176 ALA 176 256 256 ALA ALA C . n B 1 177 GLU 177 257 257 GLU GLU C . n B 1 178 ALA 178 258 258 ALA ALA C . n B 1 179 SER 179 259 259 SER SER C . n B 1 180 ARG 180 260 ? ? ? C . n B 1 181 THR 181 261 ? ? ? C . n B 1 182 LYS 182 262 ? ? ? C . n B 1 183 GLN 183 263 ? ? ? C . n B 1 184 GLN 184 264 ? ? ? C . n B 1 185 ASP 185 265 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 2001 2001 HOH HOH A . C 2 HOH 2 2002 2002 HOH HOH A . C 2 HOH 3 2003 2003 HOH HOH A . C 2 HOH 4 2004 2004 HOH HOH A . C 2 HOH 5 2005 2005 HOH HOH A . C 2 HOH 6 2006 2006 HOH HOH A . C 2 HOH 7 2007 2007 HOH HOH A . C 2 HOH 8 2008 2008 HOH HOH A . C 2 HOH 9 2009 2009 HOH HOH A . C 2 HOH 10 2010 2010 HOH HOH A . C 2 HOH 11 2011 2011 HOH HOH A . C 2 HOH 12 2012 2012 HOH HOH A . C 2 HOH 13 2013 2013 HOH HOH A . C 2 HOH 14 2014 2014 HOH HOH A . C 2 HOH 15 2015 2015 HOH HOH A . C 2 HOH 16 2016 2016 HOH HOH A . C 2 HOH 17 2017 2017 HOH HOH A . C 2 HOH 18 2018 2018 HOH HOH A . C 2 HOH 19 2019 2019 HOH HOH A . C 2 HOH 20 2020 2020 HOH HOH A . C 2 HOH 21 2021 2021 HOH HOH A . D 2 HOH 1 2001 2001 HOH HOH C . D 2 HOH 2 2002 2002 HOH HOH C . D 2 HOH 3 2003 2003 HOH HOH C . D 2 HOH 4 2004 2004 HOH HOH C . D 2 HOH 5 2005 2005 HOH HOH C . D 2 HOH 6 2006 2006 HOH HOH C . D 2 HOH 7 2007 2007 HOH HOH C . D 2 HOH 8 2008 2008 HOH HOH C . D 2 HOH 9 2009 2009 HOH HOH C . D 2 HOH 10 2010 2010 HOH HOH C . D 2 HOH 11 2011 2011 HOH HOH C . D 2 HOH 12 2012 2012 HOH HOH C . D 2 HOH 13 2013 2013 HOH HOH C . D 2 HOH 14 2014 2014 HOH HOH C . D 2 HOH 15 2015 2015 HOH HOH C . D 2 HOH 16 2016 2016 HOH HOH C . D 2 HOH 17 2017 2017 HOH HOH C . D 2 HOH 18 2018 2018 HOH HOH C . D 2 HOH 19 2019 2019 HOH HOH C . D 2 HOH 20 2020 2020 HOH HOH C . D 2 HOH 21 2021 2021 HOH HOH C . D 2 HOH 22 2022 2022 HOH HOH C . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 B,D 2 1 A,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-04-30 2 'Structure model' 1 1 2014-05-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHASER phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 107 ? ? -47.68 -71.14 2 1 GLU C 107 ? ? -54.74 -72.56 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -4 ? A MET 1 2 1 Y 1 A ALA -3 ? A ALA 2 3 1 Y 1 A HIS -2 ? A HIS 3 4 1 Y 1 A HIS -1 ? A HIS 4 5 1 Y 1 A HIS 0 ? A HIS 5 6 1 Y 1 A HIS 1 ? A HIS 6 7 1 Y 1 A HIS 2 ? A HIS 7 8 1 Y 1 A HIS 3 ? A HIS 8 9 1 Y 1 A LYS 223 ? A LYS 143 10 1 Y 1 A ARG 224 ? A ARG 144 11 1 Y 1 A ASN 225 ? A ASN 145 12 1 Y 1 A GLU 226 ? A GLU 146 13 1 Y 1 A ALA 227 ? A ALA 147 14 1 Y 1 A LYS 228 ? A LYS 148 15 1 Y 1 A THR 229 ? A THR 149 16 1 Y 1 A GLY 230 ? A GLY 150 17 1 Y 1 A ALA 231 ? A ALA 151 18 1 Y 1 A ASP 232 ? A ASP 152 19 1 Y 1 A THR 233 ? A THR 153 20 1 Y 1 A THR 234 ? A THR 154 21 1 Y 1 A ALA 235 ? A ALA 155 22 1 Y 1 A ALA 236 ? A ALA 156 23 1 Y 1 A GLY 237 ? A GLY 157 24 1 Y 1 A PRO 238 ? A PRO 158 25 1 Y 1 A LEU 239 ? A LEU 159 26 1 Y 1 A PHE 240 ? A PHE 160 27 1 Y 1 A GLN 241 ? A GLN 161 28 1 Y 1 A GLN 242 ? A GLN 162 29 1 Y 1 A ARG 243 ? A ARG 163 30 1 Y 1 A ARG 260 ? A ARG 180 31 1 Y 1 A THR 261 ? A THR 181 32 1 Y 1 A LYS 262 ? A LYS 182 33 1 Y 1 A GLN 263 ? A GLN 183 34 1 Y 1 A GLN 264 ? A GLN 184 35 1 Y 1 A ASP 265 ? A ASP 185 36 1 Y 1 C MET -4 ? B MET 1 37 1 Y 1 C ALA -3 ? B ALA 2 38 1 Y 1 C HIS -2 ? B HIS 3 39 1 Y 1 C HIS -1 ? B HIS 4 40 1 Y 1 C HIS 0 ? B HIS 5 41 1 Y 1 C HIS 1 ? B HIS 6 42 1 Y 1 C HIS 2 ? B HIS 7 43 1 Y 1 C HIS 3 ? B HIS 8 44 1 Y 1 C SER 137 ? B SER 142 45 1 Y 1 C LYS 223 ? B LYS 143 46 1 Y 1 C ARG 224 ? B ARG 144 47 1 Y 1 C ASN 225 ? B ASN 145 48 1 Y 1 C GLU 226 ? B GLU 146 49 1 Y 1 C ALA 227 ? B ALA 147 50 1 Y 1 C LYS 228 ? B LYS 148 51 1 Y 1 C THR 229 ? B THR 149 52 1 Y 1 C GLY 230 ? B GLY 150 53 1 Y 1 C ALA 231 ? B ALA 151 54 1 Y 1 C ASP 232 ? B ASP 152 55 1 Y 1 C THR 233 ? B THR 153 56 1 Y 1 C THR 234 ? B THR 154 57 1 Y 1 C ALA 235 ? B ALA 155 58 1 Y 1 C ALA 236 ? B ALA 156 59 1 Y 1 C GLY 237 ? B GLY 157 60 1 Y 1 C PRO 238 ? B PRO 158 61 1 Y 1 C LEU 239 ? B LEU 159 62 1 Y 1 C PHE 240 ? B PHE 160 63 1 Y 1 C GLN 241 ? B GLN 161 64 1 Y 1 C GLN 242 ? B GLN 162 65 1 Y 1 C ARG 243 ? B ARG 163 66 1 Y 1 C ARG 260 ? B ARG 180 67 1 Y 1 C THR 261 ? B THR 181 68 1 Y 1 C LYS 262 ? B LYS 182 69 1 Y 1 C GLN 263 ? B GLN 183 70 1 Y 1 C GLN 264 ? B GLN 184 71 1 Y 1 C ASP 265 ? B ASP 185 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #