data_4CEK # _entry.id 4CEK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4CEK pdb_00004cek 10.2210/pdb4cek/pdb PDBE EBI-58936 ? ? WWPDB D_1290058936 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-12-11 2 'Structure model' 1 1 2014-03-12 3 'Structure model' 1 2 2024-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_sf' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4CEK _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-11-11 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4CEM _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'CRYSTAL STRUCTURE OF THE FIRST MIF4G DOMAIN OF HUMAN NONSENSE MEDIATED DECAY FACTOR UPF2' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Clerici, M.' 1 'Deniaud, A.' 2 'Boehm, V.' 3 'Gehring, N.H.' 4 'Schaffitzel, C.' 5 'Cusack, S.' 6 # _citation.id primary _citation.title 'Structural and Functional Analysis of the Three Mif4G Domains of Nonsense-Mediated Decay Factor Upf2.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 42 _citation.page_first 2673 _citation.page_last ? _citation.year 2014 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24271394 _citation.pdbx_database_id_DOI 10.1093/NAR/GKT1197 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Clerici, M.' 1 ? primary 'Deniaud, A.' 2 ? primary 'Boehm, V.' 3 ? primary 'Gehring, N.H.' 4 ? primary 'Schaffitzel, C.' 5 ? primary 'Cusack, S.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'REGULATOR OF NONSENSE TRANSCRIPTS 2' 35610.613 1 ? ? 'MIF4G2, RESIDUES 455-757' ? 2 water nat water 18.015 32 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NONSENSE MRNA REDUCING FACTOR 2, UP-FRAMESHIFT SUPPRESSOR 2 HOMOLOG, HUPF2, UPF2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GAMGEGGIWEDEDARNFYENLIDLKAFVPAILFKDNEKSCQNKESNKDDTKEAKESKENKEVSSPDDLELELENLEINDD TLELEGGDEAEDLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANRKKLVRALFI VPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIGELTKFKMFTKNDTLHCLKM LLSDFSHHHIEMACTLLETCGRFLFRSPESHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNP ; _entity_poly.pdbx_seq_one_letter_code_can ;GAMGEGGIWEDEDARNFYENLIDLKAFVPAILFKDNEKSCQNKESNKDDTKEAKESKENKEVSSPDDLELELENLEINDD TLELEGGDEAEDLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANRKKLVRALFI VPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIGELTKFKMFTKNDTLHCLKM LLSDFSHHHIEMACTLLETCGRFLFRSPESHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 GLY n 1 5 GLU n 1 6 GLY n 1 7 GLY n 1 8 ILE n 1 9 TRP n 1 10 GLU n 1 11 ASP n 1 12 GLU n 1 13 ASP n 1 14 ALA n 1 15 ARG n 1 16 ASN n 1 17 PHE n 1 18 TYR n 1 19 GLU n 1 20 ASN n 1 21 LEU n 1 22 ILE n 1 23 ASP n 1 24 LEU n 1 25 LYS n 1 26 ALA n 1 27 PHE n 1 28 VAL n 1 29 PRO n 1 30 ALA n 1 31 ILE n 1 32 LEU n 1 33 PHE n 1 34 LYS n 1 35 ASP n 1 36 ASN n 1 37 GLU n 1 38 LYS n 1 39 SER n 1 40 CYS n 1 41 GLN n 1 42 ASN n 1 43 LYS n 1 44 GLU n 1 45 SER n 1 46 ASN n 1 47 LYS n 1 48 ASP n 1 49 ASP n 1 50 THR n 1 51 LYS n 1 52 GLU n 1 53 ALA n 1 54 LYS n 1 55 GLU n 1 56 SER n 1 57 LYS n 1 58 GLU n 1 59 ASN n 1 60 LYS n 1 61 GLU n 1 62 VAL n 1 63 SER n 1 64 SER n 1 65 PRO n 1 66 ASP n 1 67 ASP n 1 68 LEU n 1 69 GLU n 1 70 LEU n 1 71 GLU n 1 72 LEU n 1 73 GLU n 1 74 ASN n 1 75 LEU n 1 76 GLU n 1 77 ILE n 1 78 ASN n 1 79 ASP n 1 80 ASP n 1 81 THR n 1 82 LEU n 1 83 GLU n 1 84 LEU n 1 85 GLU n 1 86 GLY n 1 87 GLY n 1 88 ASP n 1 89 GLU n 1 90 ALA n 1 91 GLU n 1 92 ASP n 1 93 LEU n 1 94 THR n 1 95 LYS n 1 96 LYS n 1 97 LEU n 1 98 LEU n 1 99 ASP n 1 100 GLU n 1 101 GLN n 1 102 GLU n 1 103 GLN n 1 104 GLU n 1 105 ASP n 1 106 GLU n 1 107 GLU n 1 108 ALA n 1 109 SER n 1 110 THR n 1 111 GLY n 1 112 SER n 1 113 HIS n 1 114 LEU n 1 115 LYS n 1 116 LEU n 1 117 ILE n 1 118 VAL n 1 119 ASP n 1 120 ALA n 1 121 PHE n 1 122 LEU n 1 123 GLN n 1 124 GLN n 1 125 LEU n 1 126 PRO n 1 127 ASN n 1 128 CYS n 1 129 VAL n 1 130 ASN n 1 131 ARG n 1 132 ASP n 1 133 LEU n 1 134 ILE n 1 135 ASP n 1 136 LYS n 1 137 ALA n 1 138 ALA n 1 139 MET n 1 140 ASP n 1 141 PHE n 1 142 CYS n 1 143 MET n 1 144 ASN n 1 145 MET n 1 146 ASN n 1 147 THR n 1 148 LYS n 1 149 ALA n 1 150 ASN n 1 151 ARG n 1 152 LYS n 1 153 LYS n 1 154 LEU n 1 155 VAL n 1 156 ARG n 1 157 ALA n 1 158 LEU n 1 159 PHE n 1 160 ILE n 1 161 VAL n 1 162 PRO n 1 163 ARG n 1 164 GLN n 1 165 ARG n 1 166 LEU n 1 167 ASP n 1 168 LEU n 1 169 LEU n 1 170 PRO n 1 171 PHE n 1 172 TYR n 1 173 ALA n 1 174 ARG n 1 175 LEU n 1 176 VAL n 1 177 ALA n 1 178 THR n 1 179 LEU n 1 180 HIS n 1 181 PRO n 1 182 CYS n 1 183 MET n 1 184 SER n 1 185 ASP n 1 186 VAL n 1 187 ALA n 1 188 GLU n 1 189 ASP n 1 190 LEU n 1 191 CYS n 1 192 SER n 1 193 MET n 1 194 LEU n 1 195 ARG n 1 196 GLY n 1 197 ASP n 1 198 PHE n 1 199 ARG n 1 200 PHE n 1 201 HIS n 1 202 VAL n 1 203 ARG n 1 204 LYS n 1 205 LYS n 1 206 ASP n 1 207 GLN n 1 208 ILE n 1 209 ASN n 1 210 ILE n 1 211 GLU n 1 212 THR n 1 213 LYS n 1 214 ASN n 1 215 LYS n 1 216 THR n 1 217 VAL n 1 218 ARG n 1 219 PHE n 1 220 ILE n 1 221 GLY n 1 222 GLU n 1 223 LEU n 1 224 THR n 1 225 LYS n 1 226 PHE n 1 227 LYS n 1 228 MET n 1 229 PHE n 1 230 THR n 1 231 LYS n 1 232 ASN n 1 233 ASP n 1 234 THR n 1 235 LEU n 1 236 HIS n 1 237 CYS n 1 238 LEU n 1 239 LYS n 1 240 MET n 1 241 LEU n 1 242 LEU n 1 243 SER n 1 244 ASP n 1 245 PHE n 1 246 SER n 1 247 HIS n 1 248 HIS n 1 249 HIS n 1 250 ILE n 1 251 GLU n 1 252 MET n 1 253 ALA n 1 254 CYS n 1 255 THR n 1 256 LEU n 1 257 LEU n 1 258 GLU n 1 259 THR n 1 260 CYS n 1 261 GLY n 1 262 ARG n 1 263 PHE n 1 264 LEU n 1 265 PHE n 1 266 ARG n 1 267 SER n 1 268 PRO n 1 269 GLU n 1 270 SER n 1 271 HIS n 1 272 LEU n 1 273 ARG n 1 274 THR n 1 275 SER n 1 276 VAL n 1 277 LEU n 1 278 LEU n 1 279 GLU n 1 280 GLN n 1 281 MET n 1 282 MET n 1 283 ARG n 1 284 LYS n 1 285 LYS n 1 286 GLN n 1 287 ALA n 1 288 MET n 1 289 HIS n 1 290 LEU n 1 291 ASP n 1 292 ALA n 1 293 ARG n 1 294 TYR n 1 295 VAL n 1 296 THR n 1 297 MET n 1 298 VAL n 1 299 GLU n 1 300 ASN n 1 301 ALA n 1 302 TYR n 1 303 TYR n 1 304 TYR n 1 305 CYS n 1 306 ASN n 1 307 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant STAR _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PPROEXHTB _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 451 ? ? ? A . n A 1 2 ALA 2 452 ? ? ? A . n A 1 3 MET 3 453 ? ? ? A . n A 1 4 GLY 4 454 ? ? ? A . n A 1 5 GLU 5 455 ? ? ? A . n A 1 6 GLY 6 456 ? ? ? A . n A 1 7 GLY 7 457 457 GLY GLY A . n A 1 8 ILE 8 458 458 ILE ILE A . n A 1 9 TRP 9 459 459 TRP TRP A . n A 1 10 GLU 10 460 460 GLU GLU A . n A 1 11 ASP 11 461 461 ASP ASP A . n A 1 12 GLU 12 462 462 GLU GLU A . n A 1 13 ASP 13 463 463 ASP ASP A . n A 1 14 ALA 14 464 464 ALA ALA A . n A 1 15 ARG 15 465 465 ARG ARG A . n A 1 16 ASN 16 466 466 ASN ASN A . n A 1 17 PHE 17 467 467 PHE PHE A . n A 1 18 TYR 18 468 468 TYR TYR A . n A 1 19 GLU 19 469 469 GLU GLU A . n A 1 20 ASN 20 470 470 ASN ASN A . n A 1 21 LEU 21 471 471 LEU LEU A . n A 1 22 ILE 22 472 472 ILE ILE A . n A 1 23 ASP 23 473 473 ASP ASP A . n A 1 24 LEU 24 474 474 LEU LEU A . n A 1 25 LYS 25 475 475 LYS LYS A . n A 1 26 ALA 26 476 476 ALA ALA A . n A 1 27 PHE 27 477 477 PHE PHE A . n A 1 28 VAL 28 478 478 VAL VAL A . n A 1 29 PRO 29 479 479 PRO PRO A . n A 1 30 ALA 30 480 480 ALA ALA A . n A 1 31 ILE 31 480 ? ? ? A A n A 1 32 LEU 32 480 ? ? ? A B n A 1 33 PHE 33 481 ? ? ? A . n A 1 34 LYS 34 482 ? ? ? A . n A 1 35 ASP 35 483 ? ? ? A . n A 1 36 ASN 36 484 ? ? ? A . n A 1 37 GLU 37 485 ? ? ? A . n A 1 38 LYS 38 486 ? ? ? A . n A 1 39 SER 39 487 ? ? ? A . n A 1 40 CYS 40 488 ? ? ? A . n A 1 41 GLN 41 489 ? ? ? A . n A 1 42 ASN 42 490 ? ? ? A . n A 1 43 LYS 43 491 ? ? ? A . n A 1 44 GLU 44 492 ? ? ? A . n A 1 45 SER 45 493 ? ? ? A . n A 1 46 ASN 46 494 ? ? ? A . n A 1 47 LYS 47 495 ? ? ? A . n A 1 48 ASP 48 496 ? ? ? A . n A 1 49 ASP 49 497 ? ? ? A . n A 1 50 THR 50 498 ? ? ? A . n A 1 51 LYS 51 499 ? ? ? A . n A 1 52 GLU 52 500 ? ? ? A . n A 1 53 ALA 53 501 ? ? ? A . n A 1 54 LYS 54 502 ? ? ? A . n A 1 55 GLU 55 503 ? ? ? A . n A 1 56 SER 56 504 ? ? ? A . n A 1 57 LYS 57 505 ? ? ? A . n A 1 58 GLU 58 506 ? ? ? A . n A 1 59 ASN 59 507 ? ? ? A . n A 1 60 LYS 60 508 ? ? ? A . n A 1 61 GLU 61 509 ? ? ? A . n A 1 62 VAL 62 510 ? ? ? A . n A 1 63 SER 63 511 ? ? ? A . n A 1 64 SER 64 512 ? ? ? A . n A 1 65 PRO 65 513 ? ? ? A . n A 1 66 ASP 66 514 ? ? ? A . n A 1 67 ASP 67 515 ? ? ? A . n A 1 68 LEU 68 516 ? ? ? A . n A 1 69 GLU 69 517 ? ? ? A . n A 1 70 LEU 70 518 ? ? ? A . n A 1 71 GLU 71 519 ? ? ? A . n A 1 72 LEU 72 520 ? ? ? A . n A 1 73 GLU 73 521 ? ? ? A . n A 1 74 ASN 74 522 ? ? ? A . n A 1 75 LEU 75 523 ? ? ? A . n A 1 76 GLU 76 524 ? ? ? A . n A 1 77 ILE 77 525 ? ? ? A . n A 1 78 ASN 78 526 ? ? ? A . n A 1 79 ASP 79 527 ? ? ? A . n A 1 80 ASP 80 528 ? ? ? A . n A 1 81 THR 81 529 529 THR THR A . n A 1 82 LEU 82 530 530 LEU LEU A . n A 1 83 GLU 83 531 531 GLU GLU A . n A 1 84 LEU 84 532 532 LEU LEU A . n A 1 85 GLU 85 533 ? ? ? A . n A 1 86 GLY 86 533 ? ? ? A A n A 1 87 GLY 87 534 534 GLY GLY A . n A 1 88 ASP 88 535 535 ASP ASP A . n A 1 89 GLU 89 536 536 GLU GLU A . n A 1 90 ALA 90 537 537 ALA ALA A . n A 1 91 GLU 91 538 538 GLU GLU A . n A 1 92 ASP 92 539 539 ASP ASP A . n A 1 93 LEU 93 540 540 LEU LEU A . n A 1 94 THR 94 541 541 THR THR A . n A 1 95 LYS 95 542 542 LYS LYS A . n A 1 96 LYS 96 543 543 LYS LYS A . n A 1 97 LEU 97 544 544 LEU LEU A . n A 1 98 LEU 98 545 545 LEU LEU A . n A 1 99 ASP 99 546 546 ASP ASP A . n A 1 100 GLU 100 547 547 GLU GLU A . n A 1 101 GLN 101 548 548 GLN GLN A . n A 1 102 GLU 102 549 ? ? ? A . n A 1 103 GLN 103 550 ? ? ? A . n A 1 104 GLU 104 551 ? ? ? A . n A 1 105 ASP 105 552 ? ? ? A . n A 1 106 GLU 106 553 ? ? ? A . n A 1 107 GLU 107 554 ? ? ? A . n A 1 108 ALA 108 555 ? ? ? A . n A 1 109 SER 109 559 559 SER SER A . n A 1 110 THR 110 560 560 THR THR A . n A 1 111 GLY 111 561 561 GLY GLY A . n A 1 112 SER 112 562 562 SER SER A . n A 1 113 HIS 113 563 563 HIS HIS A . n A 1 114 LEU 114 564 564 LEU LEU A . n A 1 115 LYS 115 565 565 LYS LYS A . n A 1 116 LEU 116 566 566 LEU LEU A . n A 1 117 ILE 117 567 567 ILE ILE A . n A 1 118 VAL 118 568 568 VAL VAL A . n A 1 119 ASP 119 569 569 ASP ASP A . n A 1 120 ALA 120 570 570 ALA ALA A . n A 1 121 PHE 121 571 571 PHE PHE A . n A 1 122 LEU 122 572 572 LEU LEU A . n A 1 123 GLN 123 573 573 GLN GLN A . n A 1 124 GLN 124 574 574 GLN GLN A . n A 1 125 LEU 125 575 575 LEU LEU A . n A 1 126 PRO 126 576 576 PRO PRO A . n A 1 127 ASN 127 577 577 ASN ASN A . n A 1 128 CYS 128 578 578 CYS CYS A . n A 1 129 VAL 129 579 579 VAL VAL A . n A 1 130 ASN 130 580 580 ASN ASN A . n A 1 131 ARG 131 581 581 ARG ARG A . n A 1 132 ASP 132 582 582 ASP ASP A . n A 1 133 LEU 133 583 583 LEU LEU A . n A 1 134 ILE 134 584 584 ILE ILE A . n A 1 135 ASP 135 585 585 ASP ASP A . n A 1 136 LYS 136 586 586 LYS LYS A . n A 1 137 ALA 137 587 587 ALA ALA A . n A 1 138 ALA 138 588 588 ALA ALA A . n A 1 139 MET 139 589 589 MET MET A . n A 1 140 ASP 140 590 590 ASP ASP A . n A 1 141 PHE 141 591 591 PHE PHE A . n A 1 142 CYS 142 592 592 CYS CYS A . n A 1 143 MET 143 593 593 MET MET A . n A 1 144 ASN 144 594 594 ASN ASN A . n A 1 145 MET 145 595 595 MET MET A . n A 1 146 ASN 146 596 596 ASN ASN A . n A 1 147 THR 147 597 597 THR THR A . n A 1 148 LYS 148 598 598 LYS LYS A . n A 1 149 ALA 149 599 599 ALA ALA A . n A 1 150 ASN 150 600 600 ASN ASN A . n A 1 151 ARG 151 601 601 ARG ARG A . n A 1 152 LYS 152 602 602 LYS LYS A . n A 1 153 LYS 153 603 603 LYS LYS A . n A 1 154 LEU 154 604 604 LEU LEU A . n A 1 155 VAL 155 605 605 VAL VAL A . n A 1 156 ARG 156 606 606 ARG ARG A . n A 1 157 ALA 157 607 607 ALA ALA A . n A 1 158 LEU 158 608 608 LEU LEU A . n A 1 159 PHE 159 609 609 PHE PHE A . n A 1 160 ILE 160 610 610 ILE ILE A . n A 1 161 VAL 161 611 611 VAL VAL A . n A 1 162 PRO 162 612 612 PRO PRO A . n A 1 163 ARG 163 613 613 ARG ARG A . n A 1 164 GLN 164 614 614 GLN GLN A . n A 1 165 ARG 165 615 615 ARG ARG A . n A 1 166 LEU 166 616 616 LEU LEU A . n A 1 167 ASP 167 617 617 ASP ASP A . n A 1 168 LEU 168 618 618 LEU LEU A . n A 1 169 LEU 169 619 619 LEU LEU A . n A 1 170 PRO 170 620 620 PRO PRO A . n A 1 171 PHE 171 621 621 PHE PHE A . n A 1 172 TYR 172 622 622 TYR TYR A . n A 1 173 ALA 173 623 623 ALA ALA A . n A 1 174 ARG 174 624 624 ARG ARG A . n A 1 175 LEU 175 625 625 LEU LEU A . n A 1 176 VAL 176 626 626 VAL VAL A . n A 1 177 ALA 177 627 627 ALA ALA A . n A 1 178 THR 178 628 628 THR THR A . n A 1 179 LEU 179 629 629 LEU LEU A . n A 1 180 HIS 180 630 630 HIS HIS A . n A 1 181 PRO 181 631 631 PRO PRO A . n A 1 182 CYS 182 632 632 CYS CYS A . n A 1 183 MET 183 633 633 MET MET A . n A 1 184 SER 184 634 634 SER SER A . n A 1 185 ASP 185 635 635 ASP ASP A . n A 1 186 VAL 186 636 636 VAL VAL A . n A 1 187 ALA 187 637 637 ALA ALA A . n A 1 188 GLU 188 638 638 GLU GLU A . n A 1 189 ASP 189 639 639 ASP ASP A . n A 1 190 LEU 190 640 640 LEU LEU A . n A 1 191 CYS 191 641 641 CYS CYS A . n A 1 192 SER 192 642 642 SER SER A . n A 1 193 MET 193 643 643 MET MET A . n A 1 194 LEU 194 644 644 LEU LEU A . n A 1 195 ARG 195 645 645 ARG ARG A . n A 1 196 GLY 196 646 646 GLY GLY A . n A 1 197 ASP 197 647 647 ASP ASP A . n A 1 198 PHE 198 648 648 PHE PHE A . n A 1 199 ARG 199 649 649 ARG ARG A . n A 1 200 PHE 200 650 650 PHE PHE A . n A 1 201 HIS 201 651 651 HIS HIS A . n A 1 202 VAL 202 652 652 VAL VAL A . n A 1 203 ARG 203 653 653 ARG ARG A . n A 1 204 LYS 204 654 654 LYS LYS A . n A 1 205 LYS 205 655 655 LYS LYS A . n A 1 206 ASP 206 656 ? ? ? A . n A 1 207 GLN 207 657 ? ? ? A . n A 1 208 ILE 208 658 658 ILE ILE A . n A 1 209 ASN 209 659 659 ASN ASN A . n A 1 210 ILE 210 660 660 ILE ILE A . n A 1 211 GLU 211 661 661 GLU GLU A . n A 1 212 THR 212 662 662 THR THR A . n A 1 213 LYS 213 663 663 LYS LYS A . n A 1 214 ASN 214 664 664 ASN ASN A . n A 1 215 LYS 215 665 665 LYS LYS A . n A 1 216 THR 216 666 666 THR THR A . n A 1 217 VAL 217 667 667 VAL VAL A . n A 1 218 ARG 218 668 668 ARG ARG A . n A 1 219 PHE 219 669 669 PHE PHE A . n A 1 220 ILE 220 670 670 ILE ILE A . n A 1 221 GLY 221 671 671 GLY GLY A . n A 1 222 GLU 222 672 672 GLU GLU A . n A 1 223 LEU 223 673 673 LEU LEU A . n A 1 224 THR 224 674 674 THR THR A . n A 1 225 LYS 225 675 675 LYS LYS A . n A 1 226 PHE 226 676 676 PHE PHE A . n A 1 227 LYS 227 677 677 LYS LYS A . n A 1 228 MET 228 678 678 MET MET A . n A 1 229 PHE 229 679 679 PHE PHE A . n A 1 230 THR 230 680 680 THR THR A . n A 1 231 LYS 231 681 681 LYS LYS A . n A 1 232 ASN 232 682 682 ASN ASN A . n A 1 233 ASP 233 683 683 ASP ASP A . n A 1 234 THR 234 684 684 THR THR A . n A 1 235 LEU 235 685 685 LEU LEU A . n A 1 236 HIS 236 686 686 HIS HIS A . n A 1 237 CYS 237 687 687 CYS CYS A . n A 1 238 LEU 238 688 688 LEU LEU A . n A 1 239 LYS 239 689 689 LYS LYS A . n A 1 240 MET 240 690 690 MET MET A . n A 1 241 LEU 241 691 691 LEU LEU A . n A 1 242 LEU 242 692 692 LEU LEU A . n A 1 243 SER 243 693 693 SER SER A . n A 1 244 ASP 244 694 694 ASP ASP A . n A 1 245 PHE 245 695 695 PHE PHE A . n A 1 246 SER 246 696 696 SER SER A . n A 1 247 HIS 247 697 697 HIS HIS A . n A 1 248 HIS 248 698 698 HIS HIS A . n A 1 249 HIS 249 699 699 HIS HIS A . n A 1 250 ILE 250 700 700 ILE ILE A . n A 1 251 GLU 251 701 701 GLU GLU A . n A 1 252 MET 252 702 702 MET MET A . n A 1 253 ALA 253 703 703 ALA ALA A . n A 1 254 CYS 254 704 704 CYS CYS A . n A 1 255 THR 255 705 705 THR THR A . n A 1 256 LEU 256 706 706 LEU LEU A . n A 1 257 LEU 257 707 707 LEU LEU A . n A 1 258 GLU 258 708 708 GLU GLU A . n A 1 259 THR 259 709 709 THR THR A . n A 1 260 CYS 260 710 710 CYS CYS A . n A 1 261 GLY 261 711 711 GLY GLY A . n A 1 262 ARG 262 712 712 ARG ARG A . n A 1 263 PHE 263 713 713 PHE PHE A . n A 1 264 LEU 264 714 714 LEU LEU A . n A 1 265 PHE 265 715 715 PHE PHE A . n A 1 266 ARG 266 716 716 ARG ARG A . n A 1 267 SER 267 717 717 SER SER A . n A 1 268 PRO 268 718 718 PRO PRO A . n A 1 269 GLU 269 719 719 GLU GLU A . n A 1 270 SER 270 720 720 SER SER A . n A 1 271 HIS 271 721 721 HIS HIS A . n A 1 272 LEU 272 722 722 LEU LEU A . n A 1 273 ARG 273 723 723 ARG ARG A . n A 1 274 THR 274 724 724 THR THR A . n A 1 275 SER 275 725 725 SER SER A . n A 1 276 VAL 276 726 726 VAL VAL A . n A 1 277 LEU 277 727 727 LEU LEU A . n A 1 278 LEU 278 728 728 LEU LEU A . n A 1 279 GLU 279 729 729 GLU GLU A . n A 1 280 GLN 280 730 730 GLN GLN A . n A 1 281 MET 281 731 731 MET MET A . n A 1 282 MET 282 732 732 MET MET A . n A 1 283 ARG 283 733 733 ARG ARG A . n A 1 284 LYS 284 734 734 LYS LYS A . n A 1 285 LYS 285 735 735 LYS LYS A . n A 1 286 GLN 286 736 736 GLN GLN A . n A 1 287 ALA 287 737 737 ALA ALA A . n A 1 288 MET 288 738 738 MET MET A . n A 1 289 HIS 289 739 739 HIS HIS A . n A 1 290 LEU 290 740 740 LEU LEU A . n A 1 291 ASP 291 741 741 ASP ASP A . n A 1 292 ALA 292 742 742 ALA ALA A . n A 1 293 ARG 293 743 743 ARG ARG A . n A 1 294 TYR 294 744 744 TYR TYR A . n A 1 295 VAL 295 745 745 VAL VAL A . n A 1 296 THR 296 746 746 THR THR A . n A 1 297 MET 297 747 747 MET MET A . n A 1 298 VAL 298 748 748 VAL VAL A . n A 1 299 GLU 299 749 749 GLU GLU A . n A 1 300 ASN 300 750 750 ASN ASN A . n A 1 301 ALA 301 751 751 ALA ALA A . n A 1 302 TYR 302 752 752 TYR TYR A . n A 1 303 TYR 303 753 753 TYR TYR A . n A 1 304 TYR 304 754 754 TYR TYR A . n A 1 305 CYS 305 755 755 CYS CYS A . n A 1 306 ASN 306 756 756 ASN ASN A . n A 1 307 PRO 307 757 757 PRO PRO A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 2001 2001 HOH HOH A . B 2 HOH 2 2002 2002 HOH HOH A . B 2 HOH 3 2003 2003 HOH HOH A . B 2 HOH 4 2004 2004 HOH HOH A . B 2 HOH 5 2005 2005 HOH HOH A . B 2 HOH 6 2006 2006 HOH HOH A . B 2 HOH 7 2007 2007 HOH HOH A . B 2 HOH 8 2008 2008 HOH HOH A . B 2 HOH 9 2009 2009 HOH HOH A . B 2 HOH 10 2010 2010 HOH HOH A . B 2 HOH 11 2011 2011 HOH HOH A . B 2 HOH 12 2012 2012 HOH HOH A . B 2 HOH 13 2013 2013 HOH HOH A . B 2 HOH 14 2014 2014 HOH HOH A . B 2 HOH 15 2015 2015 HOH HOH A . B 2 HOH 16 2016 2016 HOH HOH A . B 2 HOH 17 2017 2017 HOH HOH A . B 2 HOH 18 2018 2018 HOH HOH A . B 2 HOH 19 2019 2019 HOH HOH A . B 2 HOH 20 2020 2020 HOH HOH A . B 2 HOH 21 2021 2021 HOH HOH A . B 2 HOH 22 2022 2022 HOH HOH A . B 2 HOH 23 2023 2023 HOH HOH A . B 2 HOH 24 2024 2024 HOH HOH A . B 2 HOH 25 2025 2025 HOH HOH A . B 2 HOH 26 2026 2026 HOH HOH A . B 2 HOH 27 2027 2027 HOH HOH A . B 2 HOH 28 2028 2028 HOH HOH A . B 2 HOH 29 2029 2029 HOH HOH A . B 2 HOH 30 2030 2030 HOH HOH A . B 2 HOH 31 2031 2031 HOH HOH A . B 2 HOH 32 2032 2032 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.6.0116 ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 SHELXD phasing SHARP ? 4 # _cell.entry_id 4CEK _cell.length_a 40.880 _cell.length_b 56.600 _cell.length_c 142.220 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CEK _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 4CEK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.41 _exptl_crystal.density_percent_sol 49.1 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '100 MM MES PH 6.0, 19% PEG 3350 AND AT A PROTEIN CONCENTRATION OF 8 MG/ML' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2009-02-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8726 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-2 _diffrn_source.pdbx_wavelength 0.8726 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4CEK _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 2.35 _reflns.number_obs 14361 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.80 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.95 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.35 _reflns_shell.d_res_low 2.40 _reflns_shell.percent_possible_all 99.4 _reflns_shell.Rmerge_I_obs 0.81 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.90 _reflns_shell.pdbx_redundancy 4.09 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4CEK _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13638 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 71.07 _refine.ls_d_res_high 2.35 _refine.ls_percent_reflns_obs 99.66 _refine.ls_R_factor_obs 0.20850 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20623 _refine.ls_R_factor_R_free 0.25083 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 723 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.950 _refine.correlation_coeff_Fo_to_Fc_free 0.936 _refine.B_iso_mean 45.713 _refine.aniso_B[1][1] 2.09 _refine.aniso_B[2][2] -1.30 _refine.aniso_B[3][3] -0.78 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.292 _refine.pdbx_overall_ESU_R_Free 0.229 _refine.overall_SU_ML 0.177 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 7.504 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1958 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 32 _refine_hist.number_atoms_total 1990 _refine_hist.d_res_high 2.35 _refine_hist.d_res_low 71.07 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.020 ? 1991 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1394 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.462 1.968 ? 2672 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.929 3.000 ? 3385 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.151 5.000 ? 235 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.692 23.542 ? 96 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.941 15.000 ? 384 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.295 15.000 ? 16 'X-RAY DIFFRACTION' ? r_chiral_restr 0.078 0.200 ? 302 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 2142 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 410 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.350 _refine_ls_shell.d_res_low 2.411 _refine_ls_shell.number_reflns_R_work 885 _refine_ls_shell.R_factor_R_work 0.286 _refine_ls_shell.percent_reflns_obs 99.27 _refine_ls_shell.R_factor_R_free 0.348 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 63 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 4CEK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4CEK _struct.title 'Crystal structure of the second MIF4G domain of human nonsense mediated decay factor UPF2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4CEK _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RENT2_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q9HAU5 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4CEK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 307 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9HAU5 _struct_ref_seq.db_align_beg 455 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 757 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 455 _struct_ref_seq.pdbx_auth_seq_align_end 757 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4CEK GLY A 1 ? UNP Q9HAU5 ? ? 'expression tag' 451 1 1 4CEK ALA A 2 ? UNP Q9HAU5 ? ? 'expression tag' 452 2 1 4CEK MET A 3 ? UNP Q9HAU5 ? ? 'expression tag' 453 3 1 4CEK GLY A 4 ? UNP Q9HAU5 ? ? 'expression tag' 454 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 12 ? ASN A 20 ? GLU A 462 ASN A 470 1 ? 9 HELX_P HELX_P2 2 ASP A 23 ? PHE A 27 ? ASP A 473 PHE A 477 5 ? 5 HELX_P HELX_P3 3 ASP A 88 ? GLU A 100 ? ASP A 535 GLU A 547 1 ? 13 HELX_P HELX_P4 4 SER A 109 ? LEU A 125 ? SER A 559 LEU A 575 1 ? 17 HELX_P HELX_P5 5 PRO A 126 ? CYS A 128 ? PRO A 576 CYS A 578 5 ? 3 HELX_P HELX_P6 6 ASN A 130 ? MET A 145 ? ASN A 580 MET A 595 1 ? 16 HELX_P HELX_P7 7 THR A 147 ? ILE A 160 ? THR A 597 ILE A 610 1 ? 14 HELX_P HELX_P8 8 PRO A 162 ? ASP A 167 ? PRO A 612 ASP A 617 5 ? 6 HELX_P HELX_P9 9 LEU A 168 ? HIS A 180 ? LEU A 618 HIS A 630 1 ? 13 HELX_P HELX_P10 10 SER A 184 ? LYS A 204 ? SER A 634 LYS A 654 1 ? 21 HELX_P HELX_P11 11 ASN A 209 ? PHE A 226 ? ASN A 659 PHE A 676 1 ? 18 HELX_P HELX_P12 12 THR A 230 ? ASP A 244 ? THR A 680 ASP A 694 1 ? 15 HELX_P HELX_P13 13 SER A 246 ? MET A 288 ? SER A 696 MET A 738 1 ? 43 HELX_P HELX_P14 14 ASP A 291 ? ASN A 306 ? ASP A 741 ASN A 756 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 479 ? ? -64.73 99.28 2 1 GLU A 547 ? ? -67.19 87.70 3 1 THR A 597 ? ? -173.28 125.85 4 1 VAL A 611 ? ? -39.32 129.24 5 1 MET A 633 ? ? -162.62 68.72 6 1 HIS A 739 ? ? 35.46 70.07 # _pdbx_entry_details.entry_id 4CEK _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'N-TERMINAL GAMG LEFT AFTER HIS-TAG CLEAVAGE' _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 451 ? A GLY 1 2 1 Y 1 A ALA 452 ? A ALA 2 3 1 Y 1 A MET 453 ? A MET 3 4 1 Y 1 A GLY 454 ? A GLY 4 5 1 Y 1 A GLU 455 ? A GLU 5 6 1 Y 1 A GLY 456 ? A GLY 6 7 1 Y 1 A ILE 480 A A ILE 31 8 1 Y 1 A LEU 480 B A LEU 32 9 1 Y 1 A PHE 481 ? A PHE 33 10 1 Y 1 A LYS 482 ? A LYS 34 11 1 Y 1 A ASP 483 ? A ASP 35 12 1 Y 1 A ASN 484 ? A ASN 36 13 1 Y 1 A GLU 485 ? A GLU 37 14 1 Y 1 A LYS 486 ? A LYS 38 15 1 Y 1 A SER 487 ? A SER 39 16 1 Y 1 A CYS 488 ? A CYS 40 17 1 Y 1 A GLN 489 ? A GLN 41 18 1 Y 1 A ASN 490 ? A ASN 42 19 1 Y 1 A LYS 491 ? A LYS 43 20 1 Y 1 A GLU 492 ? A GLU 44 21 1 Y 1 A SER 493 ? A SER 45 22 1 Y 1 A ASN 494 ? A ASN 46 23 1 Y 1 A LYS 495 ? A LYS 47 24 1 Y 1 A ASP 496 ? A ASP 48 25 1 Y 1 A ASP 497 ? A ASP 49 26 1 Y 1 A THR 498 ? A THR 50 27 1 Y 1 A LYS 499 ? A LYS 51 28 1 Y 1 A GLU 500 ? A GLU 52 29 1 Y 1 A ALA 501 ? A ALA 53 30 1 Y 1 A LYS 502 ? A LYS 54 31 1 Y 1 A GLU 503 ? A GLU 55 32 1 Y 1 A SER 504 ? A SER 56 33 1 Y 1 A LYS 505 ? A LYS 57 34 1 Y 1 A GLU 506 ? A GLU 58 35 1 Y 1 A ASN 507 ? A ASN 59 36 1 Y 1 A LYS 508 ? A LYS 60 37 1 Y 1 A GLU 509 ? A GLU 61 38 1 Y 1 A VAL 510 ? A VAL 62 39 1 Y 1 A SER 511 ? A SER 63 40 1 Y 1 A SER 512 ? A SER 64 41 1 Y 1 A PRO 513 ? A PRO 65 42 1 Y 1 A ASP 514 ? A ASP 66 43 1 Y 1 A ASP 515 ? A ASP 67 44 1 Y 1 A LEU 516 ? A LEU 68 45 1 Y 1 A GLU 517 ? A GLU 69 46 1 Y 1 A LEU 518 ? A LEU 70 47 1 Y 1 A GLU 519 ? A GLU 71 48 1 Y 1 A LEU 520 ? A LEU 72 49 1 Y 1 A GLU 521 ? A GLU 73 50 1 Y 1 A ASN 522 ? A ASN 74 51 1 Y 1 A LEU 523 ? A LEU 75 52 1 Y 1 A GLU 524 ? A GLU 76 53 1 Y 1 A ILE 525 ? A ILE 77 54 1 Y 1 A ASN 526 ? A ASN 78 55 1 Y 1 A ASP 527 ? A ASP 79 56 1 Y 1 A ASP 528 ? A ASP 80 57 1 Y 1 A GLU 533 ? A GLU 85 58 1 Y 1 A GLY 533 A A GLY 86 59 1 Y 1 A GLU 549 ? A GLU 102 60 1 Y 1 A GLN 550 ? A GLN 103 61 1 Y 1 A GLU 551 ? A GLU 104 62 1 Y 1 A ASP 552 ? A ASP 105 63 1 Y 1 A GLU 553 ? A GLU 106 64 1 Y 1 A GLU 554 ? A GLU 107 65 1 Y 1 A ALA 555 ? A ALA 108 66 1 Y 1 A ASP 656 ? A ASP 206 67 1 Y 1 A GLN 657 ? A GLN 207 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _atom_sites.entry_id 4CEK _atom_sites.fract_transf_matrix[1][1] 0.024462 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017668 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007031 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_