HEADER TRANSFERASE 13-NOV-13 4CF1 TITLE INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL CHALLENGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 50-212; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 STRAIN: TYPE1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TRANSFERASE, STRUCTURE BASED DRUG DESIGN EXPDTA X-RAY DIFFRACTION AUTHOR T.S.PEAT REVDAT 4 20-DEC-23 4CF1 1 JRNL REMARK REVDAT 3 25-JUN-14 4CF1 1 JRNL REVDAT 2 26-FEB-14 4CF1 1 JRNL REVDAT 1 18-DEC-13 4CF1 0 JRNL AUTH T.S.PEAT,O.DOLEZAL,J.NEWMAN,D.MOBLEY,J.J.DEADMAN JRNL TITL INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL JRNL TITL 2 CHALLENGE. JRNL REF J.COMPUT.AIDED MOL.DES. V. 28 347 2014 JRNL REFN ISSN 0920-654X JRNL PMID 24532034 JRNL DOI 10.1007/S10822-014-9721-7 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 26173 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1397 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1923 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2323 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 124 REMARK 3 SOLVENT ATOMS : 114 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.155 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.922 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2626 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2522 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3592 ; 1.277 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5834 ; 0.745 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 333 ; 5.116 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;31.254 ;25.413 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 451 ;13.007 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;13.963 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 405 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3001 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 583 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1248 ; 1.726 ; 3.512 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1244 ; 1.705 ; 3.504 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1565 ; 2.847 ; 5.881 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1566 ; 2.846 ; 5.885 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1378 ; 2.136 ; 4.045 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1379 ; 2.135 ; 4.050 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2014 ; 3.561 ; 6.644 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3024 ; 5.578 ;19.160 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3025 ; 5.577 ;19.174 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 57 208 B 57 208 8790 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4CF1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1290058962. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95367 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27634 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 45.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ZSQ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE PROTEIN WAS CONCENTRATED TO 5.5 REMARK 280 MG/ML IN 40 MM TRIS PH 8.0, 250 MM NACL, 30 MM MGCL2, 5 MM DTT REMARK 280 AND SET UP IN A 1:1 RATIO WITH 1.6 TO 2.0 M AMMONIUM SULFATE, REMARK 280 100 MM SODIUM ACETATE BUFFER PH 5.0 TO 5.5., PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.23400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.46800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -136.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 30 REMARK 465 GLY A 31 REMARK 465 SER A 32 REMARK 465 SER A 33 REMARK 465 HIS A 34 REMARK 465 HIS A 35 REMARK 465 HIS A 36 REMARK 465 HIS A 37 REMARK 465 HIS A 38 REMARK 465 HIS A 39 REMARK 465 SER A 40 REMARK 465 SER A 41 REMARK 465 GLY A 42 REMARK 465 LEU A 43 REMARK 465 VAL A 44 REMARK 465 PRO A 45 REMARK 465 ARG A 46 REMARK 465 GLY A 47 REMARK 465 SER A 48 REMARK 465 HIS A 49 REMARK 465 MET A 50 REMARK 465 HIS A 51 REMARK 465 GLY A 52 REMARK 465 GLN A 53 REMARK 465 VAL A 54 REMARK 465 ASP A 55 REMARK 465 SER A 56 REMARK 465 GLY A 189 REMARK 465 GLY A 190 REMARK 465 ILE A 191 REMARK 465 GLY A 192 REMARK 465 THR A 210 REMARK 465 LYS A 211 REMARK 465 GLU A 212 REMARK 465 MET B 30 REMARK 465 GLY B 31 REMARK 465 SER B 32 REMARK 465 SER B 33 REMARK 465 HIS B 34 REMARK 465 HIS B 35 REMARK 465 HIS B 36 REMARK 465 HIS B 37 REMARK 465 HIS B 38 REMARK 465 HIS B 39 REMARK 465 SER B 40 REMARK 465 SER B 41 REMARK 465 GLY B 42 REMARK 465 LEU B 43 REMARK 465 VAL B 44 REMARK 465 PRO B 45 REMARK 465 ARG B 46 REMARK 465 GLY B 47 REMARK 465 SER B 48 REMARK 465 HIS B 49 REMARK 465 MET B 50 REMARK 465 HIS B 51 REMARK 465 GLY B 52 REMARK 465 GLN B 53 REMARK 465 VAL B 54 REMARK 465 ASP B 55 REMARK 465 SER B 56 REMARK 465 GLY B 189 REMARK 465 GLY B 190 REMARK 465 ILE B 191 REMARK 465 GLY B 192 REMARK 465 LYS B 211 REMARK 465 GLU B 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 210 OG1 CG2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1215 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1214 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1216 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IY7 B 1217 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IY7 A 1215 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CE9 RELATED DB: PDB REMARK 900 INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL REMARK 900 CHALLENGE REMARK 900 RELATED ID: 4CEA RELATED DB: PDB REMARK 900 INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL REMARK 900 CHALLENGE REMARK 900 RELATED ID: 4CEB RELATED DB: PDB REMARK 900 INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL REMARK 900 CHALLENGE REMARK 900 RELATED ID: 4CEC RELATED DB: PDB REMARK 900 INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL REMARK 900 CHALLENGE REMARK 900 RELATED ID: 4CED RELATED DB: PDB REMARK 900 INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL REMARK 900 CHALLENGE REMARK 900 RELATED ID: 4CEE RELATED DB: PDB REMARK 900 INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL REMARK 900 CHALLENGE REMARK 900 RELATED ID: 4CEF RELATED DB: PDB REMARK 900 INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL REMARK 900 CHALLENGE REMARK 900 RELATED ID: 4CEO RELATED DB: PDB REMARK 900 INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL REMARK 900 CHALLENGE REMARK 900 RELATED ID: 4CEQ RELATED DB: PDB REMARK 900 INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL REMARK 900 CHALLENGE REMARK 900 RELATED ID: 4CER RELATED DB: PDB REMARK 900 INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL REMARK 900 CHALLENGE REMARK 900 RELATED ID: 4CES RELATED DB: PDB REMARK 900 INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL REMARK 900 CHALLENGE REMARK 900 RELATED ID: 4CEZ RELATED DB: PDB REMARK 900 INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL REMARK 900 CHALLENGE REMARK 900 RELATED ID: 4CF0 RELATED DB: PDB REMARK 900 INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL REMARK 900 CHALLENGE REMARK 900 RELATED ID: 4CF2 RELATED DB: PDB REMARK 900 INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL REMARK 900 CHALLENGE REMARK 900 RELATED ID: 4CF8 RELATED DB: PDB REMARK 900 INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL REMARK 900 CHALLENGE REMARK 900 RELATED ID: 4CF9 RELATED DB: PDB REMARK 900 INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL REMARK 900 CHALLENGE REMARK 900 RELATED ID: 4CFA RELATED DB: PDB REMARK 900 INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL REMARK 900 CHALLENGE REMARK 900 RELATED ID: 4CFB RELATED DB: PDB REMARK 900 INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL REMARK 900 CHALLENGE REMARK 900 RELATED ID: 4CFC RELATED DB: PDB REMARK 900 INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL REMARK 900 CHALLENGE REMARK 900 RELATED ID: 4CFD RELATED DB: PDB REMARK 900 INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL REMARK 900 CHALLENGE DBREF 4CF1 A 50 212 UNP Q76353 Q76353_9HIV1 50 212 DBREF 4CF1 B 50 212 UNP Q76353 Q76353_9HIV1 50 212 SEQADV 4CF1 MET A 30 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 GLY A 31 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 SER A 32 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 SER A 33 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 HIS A 34 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 HIS A 35 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 HIS A 36 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 HIS A 37 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 HIS A 38 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 HIS A 39 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 SER A 40 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 SER A 41 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 GLY A 42 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 LEU A 43 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 VAL A 44 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 PRO A 45 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 ARG A 46 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 GLY A 47 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 SER A 48 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 HIS A 49 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 SER A 56 UNP Q76353 CYS 56 ENGINEERED MUTATION SEQADV 4CF1 ASP A 139 UNP Q76353 PHE 139 ENGINEERED MUTATION SEQADV 4CF1 HIS A 185 UNP Q76353 PHE 185 ENGINEERED MUTATION SEQADV 4CF1 MET B 30 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 GLY B 31 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 SER B 32 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 SER B 33 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 HIS B 34 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 HIS B 35 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 HIS B 36 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 HIS B 37 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 HIS B 38 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 HIS B 39 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 SER B 40 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 SER B 41 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 GLY B 42 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 LEU B 43 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 VAL B 44 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 PRO B 45 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 ARG B 46 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 GLY B 47 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 SER B 48 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 HIS B 49 UNP Q76353 EXPRESSION TAG SEQADV 4CF1 SER B 56 UNP Q76353 CYS 56 ENGINEERED MUTATION SEQADV 4CF1 ASP B 139 UNP Q76353 PHE 139 ENGINEERED MUTATION SEQADV 4CF1 HIS B 185 UNP Q76353 PHE 185 ENGINEERED MUTATION SEQRES 1 A 183 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 183 LEU VAL PRO ARG GLY SER HIS MET HIS GLY GLN VAL ASP SEQRES 3 A 183 SER SER PRO GLY ILE TRP GLN LEU ASP CYS THR HIS LEU SEQRES 4 A 183 GLU GLY LYS VAL ILE LEU VAL ALA VAL HIS VAL ALA SER SEQRES 5 A 183 GLY TYR ILE GLU ALA GLU VAL ILE PRO ALA GLU THR GLY SEQRES 6 A 183 GLN GLU THR ALA TYR PHE LEU LEU LYS LEU ALA GLY ARG SEQRES 7 A 183 TRP PRO VAL LYS THR VAL HIS THR ASP ASN GLY SER ASN SEQRES 8 A 183 PHE THR SER THR THR VAL LYS ALA ALA CYS TRP TRP ALA SEQRES 9 A 183 GLY ILE LYS GLN GLU ASP GLY ILE PRO TYR ASN PRO GLN SEQRES 10 A 183 SER GLN GLY VAL ILE GLU SER MET ASN LYS GLU LEU LYS SEQRES 11 A 183 LYS ILE ILE GLY GLN VAL ARG ASP GLN ALA GLU HIS LEU SEQRES 12 A 183 LYS THR ALA VAL GLN MET ALA VAL PHE ILE HIS ASN HIS SEQRES 13 A 183 LYS ARG LYS GLY GLY ILE GLY GLY TYR SER ALA GLY GLU SEQRES 14 A 183 ARG ILE VAL ASP ILE ILE ALA THR ASP ILE GLN THR LYS SEQRES 15 A 183 GLU SEQRES 1 B 183 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 183 LEU VAL PRO ARG GLY SER HIS MET HIS GLY GLN VAL ASP SEQRES 3 B 183 SER SER PRO GLY ILE TRP GLN LEU ASP CYS THR HIS LEU SEQRES 4 B 183 GLU GLY LYS VAL ILE LEU VAL ALA VAL HIS VAL ALA SER SEQRES 5 B 183 GLY TYR ILE GLU ALA GLU VAL ILE PRO ALA GLU THR GLY SEQRES 6 B 183 GLN GLU THR ALA TYR PHE LEU LEU LYS LEU ALA GLY ARG SEQRES 7 B 183 TRP PRO VAL LYS THR VAL HIS THR ASP ASN GLY SER ASN SEQRES 8 B 183 PHE THR SER THR THR VAL LYS ALA ALA CYS TRP TRP ALA SEQRES 9 B 183 GLY ILE LYS GLN GLU ASP GLY ILE PRO TYR ASN PRO GLN SEQRES 10 B 183 SER GLN GLY VAL ILE GLU SER MET ASN LYS GLU LEU LYS SEQRES 11 B 183 LYS ILE ILE GLY GLN VAL ARG ASP GLN ALA GLU HIS LEU SEQRES 12 B 183 LYS THR ALA VAL GLN MET ALA VAL PHE ILE HIS ASN HIS SEQRES 13 B 183 LYS ARG LYS GLY GLY ILE GLY GLY TYR SER ALA GLY GLU SEQRES 14 B 183 ARG ILE VAL ASP ILE ILE ALA THR ASP ILE GLN THR LYS SEQRES 15 B 183 GLU HET SO4 A1210 5 HET SO4 A1211 5 HET SO4 A1212 5 HET SO4 A1213 5 HET ACT A1214 4 HET IY7 A1215 36 HET SO4 B1211 5 HET SO4 B1212 5 HET SO4 B1213 5 HET SO4 B1214 5 HET ACT B1215 4 HET ACT B1216 4 HET IY7 B1217 36 HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETNAM IY7 (2S)-6-[[(1R,2S)-2-(5-AZANYLPENTANOYLAMINO)-2,3- HETNAM 2 IY7 DIHYDRO-1H-INDEN-1-YL]METHYL]-2-(3-HYDROXY-3- HETNAM 3 IY7 OXOPROPYL)-2,3-DIHYDRO-1,4-BENZODIOXINE-5-CARBOXYLIC HETNAM 4 IY7 ACID FORMUL 3 SO4 8(O4 S 2-) FORMUL 7 ACT 3(C2 H3 O2 1-) FORMUL 8 IY7 2(C27 H32 N2 O7) FORMUL 16 HOH *114(H2 O) HELIX 1 1 THR A 93 TRP A 108 1 16 HELIX 2 2 ASN A 117 SER A 123 1 7 HELIX 3 3 SER A 123 GLY A 134 1 12 HELIX 4 4 PRO A 145 ARG A 166 1 22 HELIX 5 5 ASP A 167 ALA A 169 5 3 HELIX 6 6 HIS A 171 LYS A 186 1 16 HELIX 7 7 SER A 195 GLN A 209 1 15 HELIX 8 8 THR B 93 TRP B 108 1 16 HELIX 9 9 ASN B 117 SER B 123 1 7 HELIX 10 10 SER B 123 GLY B 134 1 12 HELIX 11 11 PRO B 145 ARG B 166 1 22 HELIX 12 12 ASP B 167 ALA B 169 5 3 HELIX 13 13 HIS B 171 LYS B 186 1 16 HELIX 14 14 SER B 195 GLN B 209 1 15 SHEET 1 AA 5 ILE A 84 ILE A 89 0 SHEET 2 AA 5 LYS A 71 HIS A 78 -1 O VAL A 72 N ILE A 89 SHEET 3 AA 5 ILE A 60 LEU A 68 -1 O GLN A 62 N VAL A 77 SHEET 4 AA 5 THR A 112 HIS A 114 1 O THR A 112 N TRP A 61 SHEET 5 AA 5 LYS A 136 GLU A 138 1 O LYS A 136 N VAL A 113 SHEET 1 BA 5 ILE B 84 ILE B 89 0 SHEET 2 BA 5 LYS B 71 HIS B 78 -1 O VAL B 72 N ILE B 89 SHEET 3 BA 5 ILE B 60 LEU B 68 -1 O GLN B 62 N VAL B 77 SHEET 4 BA 5 THR B 112 HIS B 114 1 O THR B 112 N TRP B 61 SHEET 5 BA 5 LYS B 136 GLU B 138 1 O LYS B 136 N VAL B 113 SITE 1 AC1 6 THR B 66 HIS B 67 LYS B 111 LYS B 136 SITE 2 AC1 6 LYS B 159 HOH B2030 SITE 1 AC2 5 THR A 66 HIS A 67 LYS A 111 LYS A 159 SITE 2 AC2 5 HOH A2043 SITE 1 AC3 5 LYS B 71 ARG B 166 HIS B 171 LEU B 172 SITE 2 AC3 5 HOH B2039 SITE 1 AC4 6 LYS A 71 ARG A 166 HIS A 171 LEU A 172 SITE 2 AC4 6 HOH A2049 HOH A2052 SITE 1 AC5 7 ARG A 107 HOH A2010 GLU B 85 ALA B 86 SITE 2 AC5 7 GLU B 87 PHE B 100 LYS B 103 SITE 1 AC6 6 GLY B 94 SER B 123 THR B 124 THR B 125 SITE 2 AC6 6 HOH B2013 HOH B2023 SITE 1 AC7 6 GLY A 94 SER A 123 THR A 124 THR A 125 SITE 2 AC7 6 HOH A2022 HOH A2038 SITE 1 AC8 7 GLU A 85 ALA A 86 GLU A 87 PHE A 100 SITE 2 AC8 7 LYS A 103 HOH A2010 ARG B 107 SITE 1 AC9 8 TYR A 83 HIS A 185 GLY A 197 HOH A2062 SITE 2 AC9 8 ALA B 105 GLY B 106 ARG B 107 PRO B 109 SITE 1 BC1 6 TYR A 99 LYS A 103 HOH A2025 GLU B 87 SITE 2 BC1 6 ACT B1216 HOH B2009 SITE 1 BC2 7 GLU A 87 ACT A1214 HOH A2012 HOH A2014 SITE 2 BC2 7 HOH A2053 TYR B 99 LYS B 103 SITE 1 BC3 8 GLN A 95 GLU A 96 TYR A 99 ALA B 169 SITE 2 BC3 8 GLU B 170 HIS B 171 THR B 174 MET B 178 SITE 1 BC4 7 GLU A 170 HIS A 171 THR A 174 MET A 178 SITE 2 BC4 7 GLN B 95 GLU B 96 TYR B 99 CRYST1 71.282 71.282 66.702 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014029 0.008100 0.000000 0.00000 SCALE2 0.000000 0.016199 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014992 0.00000 CONECT 2443 2444 2445 2446 2447 CONECT 2444 2443 CONECT 2445 2443 CONECT 2446 2443 CONECT 2447 2443 CONECT 2448 2449 2450 2451 2452 CONECT 2449 2448 CONECT 2450 2448 CONECT 2451 2448 CONECT 2452 2448 CONECT 2453 2454 2455 2456 2457 CONECT 2454 2453 CONECT 2455 2453 CONECT 2456 2453 CONECT 2457 2453 CONECT 2458 2459 2460 2461 2462 CONECT 2459 2458 CONECT 2460 2458 CONECT 2461 2458 CONECT 2462 2458 CONECT 2463 2464 2465 2466 CONECT 2464 2463 CONECT 2465 2463 CONECT 2466 2463 CONECT 2467 2468 2469 CONECT 2468 2467 2470 CONECT 2469 2467 2474 CONECT 2470 2468 2475 CONECT 2471 2472 2476 CONECT 2472 2471 2477 CONECT 2473 2476 2478 2479 CONECT 2474 2469 2475 2482 CONECT 2475 2470 2474 2484 CONECT 2476 2471 2473 2487 CONECT 2477 2472 2478 2502 CONECT 2478 2473 2477 2501 CONECT 2479 2473 2496 2498 CONECT 2480 2488 2494 2499 CONECT 2481 2489 2497 2500 CONECT 2482 2474 2485 CONECT 2483 2486 2501 CONECT 2484 2475 2485 2487 CONECT 2485 2482 2484 2494 CONECT 2486 2483 2490 2502 CONECT 2487 2476 2484 CONECT 2488 2480 2491 CONECT 2489 2481 2490 CONECT 2490 2486 2489 CONECT 2491 2488 2492 CONECT 2492 2491 2493 CONECT 2493 2492 2495 CONECT 2494 2480 2485 CONECT 2495 2493 CONECT 2496 2479 CONECT 2497 2481 CONECT 2498 2479 CONECT 2499 2480 CONECT 2500 2481 CONECT 2501 2478 2483 CONECT 2502 2477 2486 CONECT 2503 2504 2505 2506 2507 CONECT 2504 2503 CONECT 2505 2503 CONECT 2506 2503 CONECT 2507 2503 CONECT 2508 2509 2510 2511 2512 CONECT 2509 2508 CONECT 2510 2508 CONECT 2511 2508 CONECT 2512 2508 CONECT 2513 2514 2515 2516 2517 CONECT 2514 2513 CONECT 2515 2513 CONECT 2516 2513 CONECT 2517 2513 CONECT 2518 2519 2520 2521 2522 CONECT 2519 2518 CONECT 2520 2518 CONECT 2521 2518 CONECT 2522 2518 CONECT 2523 2524 2525 2526 CONECT 2524 2523 CONECT 2525 2523 CONECT 2526 2523 CONECT 2527 2528 2529 2530 CONECT 2528 2527 CONECT 2529 2527 CONECT 2530 2527 CONECT 2531 2532 2533 CONECT 2532 2531 2534 CONECT 2533 2531 2538 CONECT 2534 2532 2539 CONECT 2535 2536 2540 CONECT 2536 2535 2541 CONECT 2537 2540 2542 2543 CONECT 2538 2533 2539 2546 CONECT 2539 2534 2538 2548 CONECT 2540 2535 2537 2551 CONECT 2541 2536 2542 2566 CONECT 2542 2537 2541 2565 CONECT 2543 2537 2560 2562 CONECT 2544 2552 2558 2563 CONECT 2545 2553 2561 2564 CONECT 2546 2538 2549 CONECT 2547 2550 2565 CONECT 2548 2539 2549 2551 CONECT 2549 2546 2548 2558 CONECT 2550 2547 2554 2566 CONECT 2551 2540 2548 CONECT 2552 2544 2555 CONECT 2553 2545 2554 CONECT 2554 2550 2553 CONECT 2555 2552 2556 CONECT 2556 2555 2557 CONECT 2557 2556 2559 CONECT 2558 2544 2549 CONECT 2559 2557 CONECT 2560 2543 CONECT 2561 2545 CONECT 2562 2543 CONECT 2563 2544 CONECT 2564 2545 CONECT 2565 2542 2547 CONECT 2566 2541 2550 MASTER 436 0 13 14 10 0 26 6 2561 2 124 30 END