HEADER HYDROLASE 13-NOV-13 4CF3 TITLE MUTAGENESIS OF A RHODOBACTERACEAE L-HALOACID DEHALOGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-HALOACID DEHALOGENASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 3.8.1.2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTERACEAE; SOURCE 3 ORGANISM_TAXID: 31989; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: CODONPLUS-RIPL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-28A KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.R.NOVAK,C.SAYER,M.N.ISUPOV,J.A.LITTLECHILD REVDAT 2 20-DEC-23 4CF3 1 REMARK LINK REVDAT 1 26-NOV-14 4CF3 0 JRNL AUTH H.R.NOVAK,C.SAYER,M.N.ISUPOV,J.A.LITTLECHILD JRNL TITL MUTAGENESIS OF A RHODOBACTERACEAE L-HALOACID DEHALOGENASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 43714 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2330 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.16 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.22 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3115 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 181 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6936 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 293 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.283 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.228 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.180 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.179 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7164 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9792 ; 1.510 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 904 ; 5.997 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 286 ;32.357 ;23.427 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1093 ;16.580 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;14.657 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1131 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5462 ; 0.007 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3623 ; 6.339 ; 8.218 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4519 ; 8.339 ;15.350 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3541 ; 7.388 ; 8.626 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4CF3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1290058964. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46129 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 36.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 2.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2YML REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.58500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 141.60000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.13500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 141.60000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.58500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.13500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 PRO A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 PRO A 6 REMARK 465 ALA A 7 REMARK 465 ARG A 8 REMARK 465 PRO A 9 REMARK 465 SER A 10 REMARK 465 ARG A 11 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 PRO B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 PRO B 6 REMARK 465 ALA B 7 REMARK 465 ARG B 8 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 PRO C 3 REMARK 465 SER C 4 REMARK 465 HIS C 5 REMARK 465 PRO C 6 REMARK 465 ALA C 7 REMARK 465 ARG C 8 REMARK 465 PRO C 9 REMARK 465 SER C 10 REMARK 465 ARG C 11 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 PRO D 3 REMARK 465 SER D 4 REMARK 465 HIS D 5 REMARK 465 PRO D 6 REMARK 465 ALA D 7 REMARK 465 ARG D 8 REMARK 465 PRO D 9 REMARK 465 SER D 10 REMARK 465 ARG D 11 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 19 -62.92 -109.16 REMARK 500 GLU A 21 -43.08 74.15 REMARK 500 ASP A 39 115.86 -166.51 REMARK 500 PRO A 158 31.90 -95.50 REMARK 500 SER A 233 2.59 -69.51 REMARK 500 ARG B 11 -125.69 65.12 REMARK 500 VAL B 19 -66.01 -108.13 REMARK 500 GLU B 21 -46.68 69.29 REMARK 500 ALA B 116 2.63 -67.99 REMARK 500 PRO B 158 30.25 -94.61 REMARK 500 GLU B 212 -6.39 81.56 REMARK 500 VAL C 19 -62.07 -100.32 REMARK 500 GLU C 21 -47.88 74.62 REMARK 500 PRO C 158 32.98 -89.67 REMARK 500 PRO C 203 119.36 -35.85 REMARK 500 GLU C 212 -19.27 83.04 REMARK 500 VAL D 19 -63.00 -101.71 REMARK 500 GLU D 21 -50.01 69.30 REMARK 500 SER D 28 -5.54 -56.05 REMARK 500 PRO D 158 38.28 -99.31 REMARK 500 ALA D 201 75.36 -65.63 REMARK 500 PRO D 203 117.90 -35.01 REMARK 500 PRO D 214 129.97 -36.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2113 DISTANCE = 6.44 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS C 240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS D 240 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CE6 RELATED DB: PDB REMARK 900 MUTAGENESIS OF A RHODOBACTERACEAE L-HALOACID DEHALOGENASE REMARK 900 RELATED ID: 4CF4 RELATED DB: PDB REMARK 900 MUTAGENESIS OF A RHODOBACTERACEAE L-HALOACID DEHALOGENASE REMARK 900 RELATED ID: 4CF5 RELATED DB: PDB REMARK 900 MUTAGENESIS OF A RHODOBACTERACEAE L-HALOACID DEHALOGENASE DBREF 4CF3 A 1 236 UNP M9P6K0 M9P6K0_9RHOB 1 236 DBREF 4CF3 B 1 236 UNP M9P6K0 M9P6K0_9RHOB 1 236 DBREF 4CF3 C 1 236 UNP M9P6K0 M9P6K0_9RHOB 1 236 DBREF 4CF3 D 1 236 UNP M9P6K0 M9P6K0_9RHOB 1 236 SEQADV 4CF3 ALA A 183 UNP M9P6K0 HIS 183 ENGINEERED MUTATION SEQADV 4CF3 ALA B 183 UNP M9P6K0 HIS 183 ENGINEERED MUTATION SEQADV 4CF3 ALA C 183 UNP M9P6K0 HIS 183 ENGINEERED MUTATION SEQADV 4CF3 ALA D 183 UNP M9P6K0 HIS 183 ENGINEERED MUTATION SEQRES 1 A 236 MET THR PRO SER HIS PRO ALA ARG PRO SER ARG SER GLY SEQRES 2 A 236 ILE LEU VAL PHE ASB VAL ASN GLU THR LEU LEU ASP LEU SEQRES 3 A 236 THR SER LEU SER PRO LEU PHE GLU ARG VAL PHE GLY ASP SEQRES 4 A 236 ALA LYS VAL LEU ARG GLU TRP PHE PRO GLU LEU ILE LEU SEQRES 5 A 236 TYR SER GLN THR LEU THR LEU THR GLY LEU TYR ARG PRO SEQRES 6 A 236 PHE GLY GLU ILE ALA ALA ALA VAL PHE GLU MET VAL ALA SEQRES 7 A 236 ALA ASN HIS GLN ALA LYS VAL THR PRO ASP ASP ILE ALA SEQRES 8 A 236 GLU LEU LYS THR ARG LEU THR SER MET PRO ALA TYR PRO SEQRES 9 A 236 ASP VAL ALA PRO ALA LEU THR ARG LEU GLN ASP ALA GLY SEQRES 10 A 236 PHE ARG LEU VAL THR LEU THR ASN SER ALA PRO SER PRO SEQRES 11 A 236 ALA PRO SER PRO LEU GLU LYS ALA GLY ILE ALA SER PHE SEQRES 12 A 236 PHE GLU ALA HIS LEU THR VAL HIS SER SER GLN ARG PHE SEQRES 13 A 236 LYS PRO HIS PRO SER VAL TYR ASP SER THR ALA GLU THR SEQRES 14 A 236 LEU GLY ALA LYS PRO GLU GLU LEU CYS MET ILE ALA CYS SEQRES 15 A 236 ALA ILE TRP ASP THR ILE GLY ALA GLN ALA ARG GLY TRP SEQRES 16 A 236 ARG GLY GLY PHE VAL ALA ARG PRO HIS ASN THR PRO LEU SEQRES 17 A 236 THR LEU ALA GLU VAL PRO GLN PRO ASP PHE ILE GLY ARG SEQRES 18 A 236 ASP MET GLY GLU LEU ALA ASP GLN LEU ILE ALA SER LEU SEQRES 19 A 236 THR ALA SEQRES 1 B 236 MET THR PRO SER HIS PRO ALA ARG PRO SER ARG SER GLY SEQRES 2 B 236 ILE LEU VAL PHE ASB VAL ASN GLU THR LEU LEU ASP LEU SEQRES 3 B 236 THR SER LEU SER PRO LEU PHE GLU ARG VAL PHE GLY ASP SEQRES 4 B 236 ALA LYS VAL LEU ARG GLU TRP PHE PRO GLU LEU ILE LEU SEQRES 5 B 236 TYR SER GLN THR LEU THR LEU THR GLY LEU TYR ARG PRO SEQRES 6 B 236 PHE GLY GLU ILE ALA ALA ALA VAL PHE GLU MET VAL ALA SEQRES 7 B 236 ALA ASN HIS GLN ALA LYS VAL THR PRO ASP ASP ILE ALA SEQRES 8 B 236 GLU LEU LYS THR ARG LEU THR SER MET PRO ALA TYR PRO SEQRES 9 B 236 ASP VAL ALA PRO ALA LEU THR ARG LEU GLN ASP ALA GLY SEQRES 10 B 236 PHE ARG LEU VAL THR LEU THR ASN SER ALA PRO SER PRO SEQRES 11 B 236 ALA PRO SER PRO LEU GLU LYS ALA GLY ILE ALA SER PHE SEQRES 12 B 236 PHE GLU ALA HIS LEU THR VAL HIS SER SER GLN ARG PHE SEQRES 13 B 236 LYS PRO HIS PRO SER VAL TYR ASP SER THR ALA GLU THR SEQRES 14 B 236 LEU GLY ALA LYS PRO GLU GLU LEU CYS MET ILE ALA CYS SEQRES 15 B 236 ALA ILE TRP ASP THR ILE GLY ALA GLN ALA ARG GLY TRP SEQRES 16 B 236 ARG GLY GLY PHE VAL ALA ARG PRO HIS ASN THR PRO LEU SEQRES 17 B 236 THR LEU ALA GLU VAL PRO GLN PRO ASP PHE ILE GLY ARG SEQRES 18 B 236 ASP MET GLY GLU LEU ALA ASP GLN LEU ILE ALA SER LEU SEQRES 19 B 236 THR ALA SEQRES 1 C 236 MET THR PRO SER HIS PRO ALA ARG PRO SER ARG SER GLY SEQRES 2 C 236 ILE LEU VAL PHE ASB VAL ASN GLU THR LEU LEU ASP LEU SEQRES 3 C 236 THR SER LEU SER PRO LEU PHE GLU ARG VAL PHE GLY ASP SEQRES 4 C 236 ALA LYS VAL LEU ARG GLU TRP PHE PRO GLU LEU ILE LEU SEQRES 5 C 236 TYR SER GLN THR LEU THR LEU THR GLY LEU TYR ARG PRO SEQRES 6 C 236 PHE GLY GLU ILE ALA ALA ALA VAL PHE GLU MET VAL ALA SEQRES 7 C 236 ALA ASN HIS GLN ALA LYS VAL THR PRO ASP ASP ILE ALA SEQRES 8 C 236 GLU LEU LYS THR ARG LEU THR SER MET PRO ALA TYR PRO SEQRES 9 C 236 ASP VAL ALA PRO ALA LEU THR ARG LEU GLN ASP ALA GLY SEQRES 10 C 236 PHE ARG LEU VAL THR LEU THR ASN SER ALA PRO SER PRO SEQRES 11 C 236 ALA PRO SER PRO LEU GLU LYS ALA GLY ILE ALA SER PHE SEQRES 12 C 236 PHE GLU ALA HIS LEU THR VAL HIS SER SER GLN ARG PHE SEQRES 13 C 236 LYS PRO HIS PRO SER VAL TYR ASP SER THR ALA GLU THR SEQRES 14 C 236 LEU GLY ALA LYS PRO GLU GLU LEU CYS MET ILE ALA CYS SEQRES 15 C 236 ALA ILE TRP ASP THR ILE GLY ALA GLN ALA ARG GLY TRP SEQRES 16 C 236 ARG GLY GLY PHE VAL ALA ARG PRO HIS ASN THR PRO LEU SEQRES 17 C 236 THR LEU ALA GLU VAL PRO GLN PRO ASP PHE ILE GLY ARG SEQRES 18 C 236 ASP MET GLY GLU LEU ALA ASP GLN LEU ILE ALA SER LEU SEQRES 19 C 236 THR ALA SEQRES 1 D 236 MET THR PRO SER HIS PRO ALA ARG PRO SER ARG SER GLY SEQRES 2 D 236 ILE LEU VAL PHE ASB VAL ASN GLU THR LEU LEU ASP LEU SEQRES 3 D 236 THR SER LEU SER PRO LEU PHE GLU ARG VAL PHE GLY ASP SEQRES 4 D 236 ALA LYS VAL LEU ARG GLU TRP PHE PRO GLU LEU ILE LEU SEQRES 5 D 236 TYR SER GLN THR LEU THR LEU THR GLY LEU TYR ARG PRO SEQRES 6 D 236 PHE GLY GLU ILE ALA ALA ALA VAL PHE GLU MET VAL ALA SEQRES 7 D 236 ALA ASN HIS GLN ALA LYS VAL THR PRO ASP ASP ILE ALA SEQRES 8 D 236 GLU LEU LYS THR ARG LEU THR SER MET PRO ALA TYR PRO SEQRES 9 D 236 ASP VAL ALA PRO ALA LEU THR ARG LEU GLN ASP ALA GLY SEQRES 10 D 236 PHE ARG LEU VAL THR LEU THR ASN SER ALA PRO SER PRO SEQRES 11 D 236 ALA PRO SER PRO LEU GLU LYS ALA GLY ILE ALA SER PHE SEQRES 12 D 236 PHE GLU ALA HIS LEU THR VAL HIS SER SER GLN ARG PHE SEQRES 13 D 236 LYS PRO HIS PRO SER VAL TYR ASP SER THR ALA GLU THR SEQRES 14 D 236 LEU GLY ALA LYS PRO GLU GLU LEU CYS MET ILE ALA CYS SEQRES 15 D 236 ALA ILE TRP ASP THR ILE GLY ALA GLN ALA ARG GLY TRP SEQRES 16 D 236 ARG GLY GLY PHE VAL ALA ARG PRO HIS ASN THR PRO LEU SEQRES 17 D 236 THR LEU ALA GLU VAL PRO GLN PRO ASP PHE ILE GLY ARG SEQRES 18 D 236 ASP MET GLY GLU LEU ALA ASP GLN LEU ILE ALA SER LEU SEQRES 19 D 236 THR ALA MODRES 4CF3 ASB A 18 ASP ASPARTIC ACID-4-CARBOXYMETHYL ESTER MODRES 4CF3 ASB B 18 ASP ASPARTIC ACID-4-CARBOXYMETHYL ESTER MODRES 4CF3 ASB C 18 ASP ASPARTIC ACID-4-CARBOXYMETHYL ESTER MODRES 4CF3 ASB D 18 ASP ASPARTIC ACID-4-CARBOXYMETHYL ESTER HET ASB A 18 12 HET ASB B 18 12 HET ASB C 18 12 HET ASB D 18 12 HET TRS A 240 8 HET TRS B 240 8 HET TRS C 240 8 HET TRS D 240 8 HETNAM ASB ASPARTIC ACID-4-CARBOXYMETHYL ESTER HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 1 ASB 4(C6 H9 N O6) FORMUL 5 TRS 4(C4 H12 N O3 1+) FORMUL 9 HOH *293(H2 O) HELIX 1 1 ASP A 25 SER A 28 5 4 HELIX 2 2 LEU A 29 GLY A 38 1 10 HELIX 3 3 ASP A 39 LYS A 41 5 3 HELIX 4 4 VAL A 42 GLY A 61 1 20 HELIX 5 5 PRO A 65 HIS A 81 1 17 HELIX 6 6 THR A 86 THR A 98 1 13 HELIX 7 7 ASP A 105 ALA A 116 1 12 HELIX 8 8 SER A 133 ALA A 138 1 6 HELIX 9 9 ILE A 140 PHE A 144 5 5 HELIX 10 10 HIS A 159 GLY A 171 1 13 HELIX 11 11 LYS A 173 GLU A 175 5 3 HELIX 12 12 ALA A 183 ALA A 192 1 10 HELIX 13 13 ASP A 222 SER A 233 1 12 HELIX 14 14 LEU A 234 ALA A 236 5 3 HELIX 15 15 ASP B 25 SER B 28 5 4 HELIX 16 16 LEU B 29 GLY B 38 1 10 HELIX 17 17 ASP B 39 LYS B 41 5 3 HELIX 18 18 VAL B 42 GLY B 61 1 20 HELIX 19 19 PRO B 65 HIS B 81 1 17 HELIX 20 20 THR B 86 THR B 98 1 13 HELIX 21 21 ASP B 105 ALA B 116 1 12 HELIX 22 22 SER B 133 ALA B 138 1 6 HELIX 23 23 ILE B 140 PHE B 144 5 5 HELIX 24 24 HIS B 151 SER B 153 5 3 HELIX 25 25 HIS B 159 LEU B 170 1 12 HELIX 26 26 LYS B 173 GLU B 175 5 3 HELIX 27 27 ALA B 183 ALA B 192 1 10 HELIX 28 28 ASP B 222 ALA B 236 1 15 HELIX 29 29 ASP C 25 SER C 28 5 4 HELIX 30 30 LEU C 29 GLY C 38 1 10 HELIX 31 31 ASP C 39 LYS C 41 5 3 HELIX 32 32 VAL C 42 GLY C 61 1 20 HELIX 33 33 PRO C 65 HIS C 81 1 17 HELIX 34 34 THR C 86 THR C 98 1 13 HELIX 35 35 ASP C 105 ALA C 116 1 12 HELIX 36 36 SER C 133 ALA C 138 1 6 HELIX 37 37 ILE C 140 PHE C 144 5 5 HELIX 38 38 HIS C 151 SER C 153 5 3 HELIX 39 39 HIS C 159 GLY C 171 1 13 HELIX 40 40 LYS C 173 GLU C 175 5 3 HELIX 41 41 ALA C 183 ALA C 192 1 10 HELIX 42 42 ASP C 222 SER C 233 1 12 HELIX 43 43 LEU C 234 ALA C 236 5 3 HELIX 44 44 ASP D 25 SER D 28 5 4 HELIX 45 45 LEU D 29 GLY D 38 1 10 HELIX 46 46 ASP D 39 LYS D 41 5 3 HELIX 47 47 VAL D 42 GLY D 61 1 20 HELIX 48 48 PRO D 65 HIS D 81 1 17 HELIX 49 49 THR D 86 SER D 99 1 14 HELIX 50 50 ASP D 105 ALA D 116 1 12 HELIX 51 51 SER D 133 ALA D 138 1 6 HELIX 52 52 ILE D 140 PHE D 144 5 5 HELIX 53 53 HIS D 151 GLN D 154 5 4 HELIX 54 54 HIS D 159 LEU D 170 1 12 HELIX 55 55 LYS D 173 GLU D 175 5 3 HELIX 56 56 ALA D 183 ALA D 192 1 10 HELIX 57 57 ASP D 222 SER D 233 1 12 SHEET 1 AA 6 ALA A 146 THR A 149 0 SHEET 2 AA 6 ARG A 119 THR A 124 1 O THR A 122 N LEU A 148 SHEET 3 AA 6 ILE A 14 PHE A 17 1 O LEU A 15 N VAL A 121 SHEET 4 AA 6 LEU A 177 ALA A 181 1 O CYS A 178 N VAL A 16 SHEET 5 AA 6 ARG A 196 VAL A 200 1 O ARG A 196 N MET A 179 SHEET 6 AA 6 PHE A 218 GLY A 220 1 O PHE A 218 N PHE A 199 SHEET 1 BA 6 ALA B 146 THR B 149 0 SHEET 2 BA 6 ARG B 119 THR B 124 1 O THR B 122 N LEU B 148 SHEET 3 BA 6 ILE B 14 PHE B 17 1 O LEU B 15 N VAL B 121 SHEET 4 BA 6 LEU B 177 ALA B 181 1 O CYS B 178 N VAL B 16 SHEET 5 BA 6 ARG B 196 VAL B 200 1 O ARG B 196 N MET B 179 SHEET 6 BA 6 PHE B 218 GLY B 220 1 O PHE B 218 N PHE B 199 SHEET 1 CA 6 ALA C 146 THR C 149 0 SHEET 2 CA 6 ARG C 119 THR C 124 1 O THR C 122 N LEU C 148 SHEET 3 CA 6 ILE C 14 PHE C 17 1 O LEU C 15 N VAL C 121 SHEET 4 CA 6 LEU C 177 ALA C 181 1 O CYS C 178 N VAL C 16 SHEET 5 CA 6 ARG C 196 VAL C 200 1 O ARG C 196 N MET C 179 SHEET 6 CA 6 PHE C 218 GLY C 220 1 O PHE C 218 N PHE C 199 SHEET 1 DA 5 ALA D 146 THR D 149 0 SHEET 2 DA 5 ARG D 119 THR D 124 1 O THR D 122 N LEU D 148 SHEET 3 DA 5 ILE D 14 PHE D 17 1 O LEU D 15 N VAL D 121 SHEET 4 DA 5 LEU D 177 ALA D 181 1 O CYS D 178 N VAL D 16 SHEET 5 DA 5 ARG D 196 PHE D 199 1 O ARG D 196 N MET D 179 LINK C PHE A 17 N ASB A 18 1555 1555 1.32 LINK C ASB A 18 N VAL A 19 1555 1555 1.33 LINK C PHE B 17 N ASB B 18 1555 1555 1.31 LINK C ASB B 18 N VAL B 19 1555 1555 1.33 LINK C PHE C 17 N ASB C 18 1555 1555 1.33 LINK C ASB C 18 N VAL C 19 1555 1555 1.33 LINK C PHE D 17 N ASB D 18 1555 1555 1.33 LINK C ASB D 18 N VAL D 19 1555 1555 1.33 CISPEP 1 ALA A 131 PRO A 132 0 5.85 CISPEP 2 LYS A 157 PRO A 158 0 0.10 CISPEP 3 ALA B 131 PRO B 132 0 3.22 CISPEP 4 LYS B 157 PRO B 158 0 1.63 CISPEP 5 ALA C 131 PRO C 132 0 -4.45 CISPEP 6 LYS C 157 PRO C 158 0 -3.57 CISPEP 7 ALA D 131 PRO D 132 0 6.39 CISPEP 8 LYS D 157 PRO D 158 0 -0.67 SITE 1 AC1 8 GLU A 49 TYR A 53 MET A 76 GLU B 21 SITE 2 AC1 8 PRO B 48 ALA B 183 TRP B 185 ASN B 205 SITE 1 AC2 9 GLU A 21 PHE A 47 PRO A 48 ALA A 183 SITE 2 AC2 9 TRP A 185 ASN A 205 HOH A2017 GLU B 49 SITE 3 AC2 9 TYR B 53 SITE 1 AC3 8 GLU C 49 TYR C 53 MET C 76 GLU D 21 SITE 2 AC3 8 PHE D 47 PRO D 48 TRP D 185 ASN D 205 SITE 1 AC4 8 GLU C 21 PHE C 47 PRO C 48 ALA C 183 SITE 2 AC4 8 TRP C 185 ASN C 205 GLU D 49 TYR D 53 CRYST1 43.170 68.270 283.200 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023164 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014648 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003531 0.00000