HEADER HYDROLASE 19-NOV-13 4CFO TITLE STRUCTURE OF LYTIC TRANSGLYCOSYLASE MLTC FROM ESCHERICHIA COLI IN TITLE 2 COMPLEX WITH TETRASACCHARIDE AT 2.9 A RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MLTC; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.ARTOLA-RECOLONS,N.BERNARDO-GARCIA,S.MOBASHERY,J.A.HERMOSO REVDAT 4 20-DEC-23 4CFO 1 HETSYN REVDAT 3 29-JUL-20 4CFO 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 01-OCT-14 4CFO 1 JRNL REVDAT 1 23-JUL-14 4CFO 0 JRNL AUTH C.ARTOLA-RECOLONS,M.LEE,N.BERNARDO-GARCIA,B.BLAZQUEZ, JRNL AUTH 2 D.HESEK,S.G.BARTUAL,K.V.MAHASENAN,E.LASTOCHKIN,H.PI, JRNL AUTH 3 B.BOGGESS,K.MEINDL,I.USON,J.F.FISHER,S.MOBASHERY,J.A.HERMOSO JRNL TITL STRUCTURE AND CELL WALL CLEAVAGE BY MODULAR LYTIC JRNL TITL 2 TRANSGLYCOSYLASE MLTC OF ESCHERICHIA COLI. JRNL REF ACS CHEM.BIOL. V. 9 2058 2014 JRNL REFN ISSN 1554-8929 JRNL PMID 24988330 JRNL DOI 10.1021/CB500439C REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 14033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 741 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1009 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.4250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5154 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 136 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.24000 REMARK 3 B22 (A**2) : -1.06000 REMARK 3 B33 (A**2) : -0.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.53000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.492 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.399 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 47.622 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.837 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5398 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5122 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7326 ; 1.509 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11718 ; 0.810 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 652 ; 7.182 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 252 ;39.993 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 886 ;20.032 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;19.756 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 838 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6088 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1290 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2614 ; 1.173 ; 1.613 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2613 ; 1.172 ; 1.613 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3264 ; 2.097 ; 2.413 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2784 ; 1.039 ; 1.669 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 359 REMARK 3 ORIGIN FOR THE GROUP (A): 20.7948 -0.1929 24.9126 REMARK 3 T TENSOR REMARK 3 T11: 0.1853 T22: 0.2122 REMARK 3 T33: 0.1608 T12: -0.0010 REMARK 3 T13: 0.0316 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 0.3966 L22: 1.1454 REMARK 3 L33: 0.3254 L12: 0.4009 REMARK 3 L13: 0.1316 L23: -0.3194 REMARK 3 S TENSOR REMARK 3 S11: -0.0057 S12: -0.0229 S13: -0.0086 REMARK 3 S21: -0.0653 S22: 0.0102 S23: -0.0022 REMARK 3 S31: 0.0067 S32: -0.0138 S33: -0.0044 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 33 B 359 REMARK 3 ORIGIN FOR THE GROUP (A): 3.9662 35.6565 3.9684 REMARK 3 T TENSOR REMARK 3 T11: 0.2171 T22: 0.1950 REMARK 3 T33: 0.1864 T12: -0.0215 REMARK 3 T13: -0.0655 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 0.5140 L22: 0.8097 REMARK 3 L33: 0.9536 L12: 0.0014 REMARK 3 L13: 0.6565 L23: 0.2124 REMARK 3 S TENSOR REMARK 3 S11: -0.1189 S12: -0.0129 S13: 0.1783 REMARK 3 S21: -0.0550 S22: -0.1830 S23: 0.0503 REMARK 3 S31: -0.1036 S32: -0.0874 S33: 0.3020 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2001 A 2020 REMARK 3 RESIDUE RANGE : B 2001 B 2021 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7099 11.9123 17.2320 REMARK 3 T TENSOR REMARK 3 T11: 0.1377 T22: 0.3226 REMARK 3 T33: 0.1695 T12: -0.0021 REMARK 3 T13: 0.0244 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.0907 L22: 0.2528 REMARK 3 L33: 0.0683 L12: -0.0417 REMARK 3 L13: -0.0560 L23: -0.0144 REMARK 3 S TENSOR REMARK 3 S11: 0.0398 S12: 0.0071 S13: -0.0747 REMARK 3 S21: 0.0247 S22: -0.1024 S23: 0.1061 REMARK 3 S31: -0.0584 S32: 0.0426 S33: 0.0626 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1360 A 1363 REMARK 3 RESIDUE RANGE : B 1360 B 1363 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0854 18.1150 10.5629 REMARK 3 T TENSOR REMARK 3 T11: 0.1001 T22: 0.4247 REMARK 3 T33: 0.1221 T12: -0.0092 REMARK 3 T13: 0.1032 T23: 0.0571 REMARK 3 L TENSOR REMARK 3 L11: 3.3653 L22: 3.1164 REMARK 3 L33: 4.1773 L12: -0.7046 REMARK 3 L13: 3.7131 L23: -0.2950 REMARK 3 S TENSOR REMARK 3 S11: 0.3033 S12: 0.0319 S13: 0.2314 REMARK 3 S21: -0.1098 S22: -0.5307 S23: -0.1902 REMARK 3 S31: 0.3561 S32: -0.0327 S33: 0.2274 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4CFO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1290058847. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 8 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97948 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18455 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 45.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: IMOSFLM, SCALA, MOLREP, REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 4C5F REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 3350, 0.2M TRI-AMMONIUM REMARK 280 CITRATE PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 56.40700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 19 REMARK 465 THR A 20 REMARK 465 LYS A 21 REMARK 465 LYS A 22 REMARK 465 GLY A 23 REMARK 465 ASP A 24 REMARK 465 THR A 25 REMARK 465 TYR A 26 REMARK 465 ASN A 27 REMARK 465 GLU A 28 REMARK 465 ALA A 29 REMARK 465 TRP A 30 REMARK 465 VAL A 31 REMARK 465 LYS A 32 REMARK 465 MET B 19 REMARK 465 THR B 20 REMARK 465 LYS B 21 REMARK 465 LYS B 22 REMARK 465 GLY B 23 REMARK 465 ASP B 24 REMARK 465 THR B 25 REMARK 465 TYR B 26 REMARK 465 ASN B 27 REMARK 465 GLU B 28 REMARK 465 ALA B 29 REMARK 465 TRP B 30 REMARK 465 VAL B 31 REMARK 465 LYS B 32 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU B 148 OG SER B 152 2.02 REMARK 500 OG SER A 226 O7 NM9 C 1 2.03 REMARK 500 O4 NAG C 2 O5 NM6 C 3 2.05 REMARK 500 O ILE A 51 NH2 ARG A 171 2.08 REMARK 500 OH TYR B 273 O6 NM6 D 3 2.09 REMARK 500 O VAL A 58 OH TYR A 68 2.10 REMARK 500 O4 NM6 C 3 O5 NAG C 4 2.12 REMARK 500 OG SER B 226 O7 NM9 D 1 2.12 REMARK 500 OD1 ASN A 300 OG SER A 342 2.15 REMARK 500 OG SER B 200 O VAL B 205 2.15 REMARK 500 O4 NM6 D 3 O5 NAG D 4 2.18 REMARK 500 C4 NM6 C 3 C1 NAG C 4 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 35 -76.05 -83.07 REMARK 500 GLU A 94 75.50 43.00 REMARK 500 GLU A 130 74.30 -118.54 REMARK 500 ASP A 139 170.10 -52.04 REMARK 500 ARG A 146 -35.94 -135.80 REMARK 500 LEU A 170 -61.45 -132.47 REMARK 500 ASP A 229 61.82 32.62 REMARK 500 GLN A 235 74.86 36.48 REMARK 500 THR A 240 -74.89 -123.66 REMARK 500 GLN A 249 -27.52 66.06 REMARK 500 VAL A 280 -81.66 -87.14 REMARK 500 GLU B 56 71.82 -115.26 REMARK 500 ALA B 60 154.23 -48.11 REMARK 500 THR B 93 91.40 -59.41 REMARK 500 GLU B 94 79.17 33.28 REMARK 500 ALA B 96 152.95 -43.38 REMARK 500 ALA B 97 -18.08 74.82 REMARK 500 HIS B 98 -61.63 -92.70 REMARK 500 ASP B 111 89.24 -67.98 REMARK 500 LEU B 170 -55.55 -136.19 REMARK 500 ASN B 183 35.45 -92.19 REMARK 500 TYR B 223 30.93 -97.98 REMARK 500 GLN B 235 70.96 52.63 REMARK 500 THR B 240 -79.07 -110.63 REMARK 500 SER B 256 174.57 -57.92 REMARK 500 VAL B 280 -74.72 -145.27 REMARK 500 PHE B 310 -51.58 -132.27 REMARK 500 SER B 311 141.90 -170.76 REMARK 500 THR B 335 -66.06 -131.01 REMARK 500 ARG B 336 46.21 -74.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 229 ALA A 230 149.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2021 DISTANCE = 6.78 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CFP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MLTC IN COMPLEX WITH TETRASACCHARIDE AT 2.15 A REMARK 900 RESOLUTION DBREF 4CFO A 20 359 UNP C5A0N2 MLTC_ECOBW 20 359 DBREF 4CFO B 20 359 UNP C5A0N2 MLTC_ECOBW 20 359 SEQADV 4CFO MET A 19 UNP C5A0N2 EXPRESSION TAG SEQADV 4CFO GLN A 217 UNP C5A0N2 GLU 217 CONFLICT SEQADV 4CFO MET B 19 UNP C5A0N2 EXPRESSION TAG SEQADV 4CFO GLN B 217 UNP C5A0N2 GLU 217 CONFLICT SEQRES 1 A 341 MET THR LYS LYS GLY ASP THR TYR ASN GLU ALA TRP VAL SEQRES 2 A 341 LYS ASP THR ASN GLY PHE ASP ILE LEU MET GLY GLN PHE SEQRES 3 A 341 ALA HIS ASN ILE GLU ASN ILE TRP GLY PHE LYS GLU VAL SEQRES 4 A 341 VAL ILE ALA GLY PRO LYS ASP TYR VAL LYS TYR THR ASP SEQRES 5 A 341 GLN TYR GLN THR ARG SER HIS ILE ASN PHE ASP ASP GLY SEQRES 6 A 341 THR ILE THR ILE GLU THR ILE ALA GLY THR GLU PRO ALA SEQRES 7 A 341 ALA HIS LEU ARG ARG ALA ILE ILE LYS THR LEU LEU MET SEQRES 8 A 341 GLY ASP ASP PRO SER SER VAL ASP LEU TYR SER ASP VAL SEQRES 9 A 341 ASP ASP ILE THR ILE SER LYS GLU PRO PHE LEU TYR GLY SEQRES 10 A 341 GLN VAL VAL ASP ASN THR GLY GLN PRO ILE ARG TRP GLU SEQRES 11 A 341 GLY ARG ALA SER ASN PHE ALA ASP TYR LEU LEU LYS ASN SEQRES 12 A 341 ARG LEU LYS SER ARG SER ASN GLY LEU ARG ILE ILE TYR SEQRES 13 A 341 SER VAL THR ILE ASN MET VAL PRO ASN HIS LEU ASP LYS SEQRES 14 A 341 ARG ALA HIS LYS TYR LEU GLY MET VAL ARG GLN ALA SER SEQRES 15 A 341 ARG LYS TYR GLY VAL ASP GLU SER LEU ILE LEU ALA ILE SEQRES 16 A 341 MET GLN THR GLN SER SER PHE ASN PRO TYR ALA VAL SER SEQRES 17 A 341 ARG SER ASP ALA LEU GLY LEU MET GLN VAL VAL GLN HIS SEQRES 18 A 341 THR ALA GLY LYS ASP VAL PHE ARG SER GLN GLY LYS SER SEQRES 19 A 341 GLY THR PRO SER ARG SER PHE LEU PHE ASP PRO ALA SER SEQRES 20 A 341 ASN ILE ASP THR GLY THR ALA TYR LEU ALA MET LEU ASN SEQRES 21 A 341 ASN VAL TYR LEU GLY GLY ILE ASP ASN PRO THR SER ARG SEQRES 22 A 341 ARG TYR ALA VAL ILE THR ALA TYR ASN GLY GLY ALA GLY SEQRES 23 A 341 SER VAL LEU ARG VAL PHE SER ASN ASP LYS ILE GLN ALA SEQRES 24 A 341 ALA ASN ILE ILE ASN THR MET THR PRO GLY ASP VAL TYR SEQRES 25 A 341 GLN THR LEU THR THR ARG HIS PRO SER ALA GLU SER ARG SEQRES 26 A 341 ARG TYR LEU TYR LYS VAL ASN THR ALA GLN LYS SER TYR SEQRES 27 A 341 ARG ARG ARG SEQRES 1 B 341 MET THR LYS LYS GLY ASP THR TYR ASN GLU ALA TRP VAL SEQRES 2 B 341 LYS ASP THR ASN GLY PHE ASP ILE LEU MET GLY GLN PHE SEQRES 3 B 341 ALA HIS ASN ILE GLU ASN ILE TRP GLY PHE LYS GLU VAL SEQRES 4 B 341 VAL ILE ALA GLY PRO LYS ASP TYR VAL LYS TYR THR ASP SEQRES 5 B 341 GLN TYR GLN THR ARG SER HIS ILE ASN PHE ASP ASP GLY SEQRES 6 B 341 THR ILE THR ILE GLU THR ILE ALA GLY THR GLU PRO ALA SEQRES 7 B 341 ALA HIS LEU ARG ARG ALA ILE ILE LYS THR LEU LEU MET SEQRES 8 B 341 GLY ASP ASP PRO SER SER VAL ASP LEU TYR SER ASP VAL SEQRES 9 B 341 ASP ASP ILE THR ILE SER LYS GLU PRO PHE LEU TYR GLY SEQRES 10 B 341 GLN VAL VAL ASP ASN THR GLY GLN PRO ILE ARG TRP GLU SEQRES 11 B 341 GLY ARG ALA SER ASN PHE ALA ASP TYR LEU LEU LYS ASN SEQRES 12 B 341 ARG LEU LYS SER ARG SER ASN GLY LEU ARG ILE ILE TYR SEQRES 13 B 341 SER VAL THR ILE ASN MET VAL PRO ASN HIS LEU ASP LYS SEQRES 14 B 341 ARG ALA HIS LYS TYR LEU GLY MET VAL ARG GLN ALA SER SEQRES 15 B 341 ARG LYS TYR GLY VAL ASP GLU SER LEU ILE LEU ALA ILE SEQRES 16 B 341 MET GLN THR GLN SER SER PHE ASN PRO TYR ALA VAL SER SEQRES 17 B 341 ARG SER ASP ALA LEU GLY LEU MET GLN VAL VAL GLN HIS SEQRES 18 B 341 THR ALA GLY LYS ASP VAL PHE ARG SER GLN GLY LYS SER SEQRES 19 B 341 GLY THR PRO SER ARG SER PHE LEU PHE ASP PRO ALA SER SEQRES 20 B 341 ASN ILE ASP THR GLY THR ALA TYR LEU ALA MET LEU ASN SEQRES 21 B 341 ASN VAL TYR LEU GLY GLY ILE ASP ASN PRO THR SER ARG SEQRES 22 B 341 ARG TYR ALA VAL ILE THR ALA TYR ASN GLY GLY ALA GLY SEQRES 23 B 341 SER VAL LEU ARG VAL PHE SER ASN ASP LYS ILE GLN ALA SEQRES 24 B 341 ALA ASN ILE ILE ASN THR MET THR PRO GLY ASP VAL TYR SEQRES 25 B 341 GLN THR LEU THR THR ARG HIS PRO SER ALA GLU SER ARG SEQRES 26 B 341 ARG TYR LEU TYR LYS VAL ASN THR ALA GLN LYS SER TYR SEQRES 27 B 341 ARG ARG ARG HET NM9 C 1 21 HET NAG C 2 14 HET NM6 C 3 19 HET NAG C 4 14 HET NM9 D 1 21 HET NAG D 2 14 HET NM6 D 3 19 HET NAG D 4 14 HETNAM NM9 METHYL 2-ACETAMIDO-3-O-[(2R)-1-AMINO-1-OXOPROPAN-2-YL]- HETNAM 2 NM9 2-DEOXY-BETA-D-GLUCOPYRANOSIDE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NM6 2-ACETAMIDO-3-O-[(2R)-1-AMINO-1-OXOPROPAN-2-YL]-2- HETNAM 2 NM6 DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NM9 (2R)-2-[(2R,3S,4R,5R,6R)-5-ACETAMIDO-2-(HYDROXYMETHYL)- HETSYN 2 NM9 6-METHOXY-3-OXIDANYL-OXAN-4-YL]OXYPROPANAMIDE; METHYL HETSYN 3 NM9 2-ACETAMIDO-3-O-[(2R)-1-AMINO-1-OXOPROPAN-2-YL]-2- HETSYN 4 NM9 DEOXY-BETA-D-GLUCOSIDE; METHYL 2-ACETAMIDO-3-O-[(2R)- HETSYN 5 NM9 1-AMINO-1-OXOPROPAN-2-YL]-2-DEOXY-D-GLUCOSIDE; METHYL HETSYN 6 NM9 2-ACETAMIDO-3-O-[(2R)-1-AMINO-1-OXOPROPAN-2-YL]-2- HETSYN 7 NM9 DEOXY-GLUCOSIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN NM6 (2R)-2-[(2R,3S,4R,5R,6R)-5-ACETAMIDO-2-(HYDROXYMETHYL)- HETSYN 2 NM6 3,6-BIS(OXIDANYL)OXAN-4-YL]OXYPROPANAMIDE; N-ACETYL-3- HETSYN 3 NM6 O-[(2R)-1-AMINO-1-OXOPROPAN-2-YL]-BETA-D-GLUCOSAMINE; HETSYN 4 NM6 2-ACETAMIDO-3-O-[(2R)-1-AMINO-1-OXOPROPAN-2-YL]-2- HETSYN 5 NM6 DEOXY-BETA-D-GLUCOSE; 2-ACETAMIDO-3-O-[(2R)-1-AMINO-1- HETSYN 6 NM6 OXOPROPAN-2-YL]-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO-3-O- HETSYN 7 NM6 [(2R)-1-AMINO-1-OXOPROPAN-2-YL]-2-DEOXY-GLUCOSE FORMUL 3 NM9 2(C12 H22 N2 O7) FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 NM6 2(C11 H20 N2 O7) FORMUL 5 HOH *41(H2 O) HELIX 1 1 PHE A 37 GLY A 53 1 17 HELIX 2 2 GLU A 94 MET A 109 1 16 HELIX 3 3 TRP A 147 ARG A 162 1 16 HELIX 4 4 ASN A 183 ALA A 189 1 7 HELIX 5 5 TYR A 192 GLY A 204 1 13 HELIX 6 6 ASP A 206 SER A 219 1 14 HELIX 7 7 THR A 240 SER A 248 1 9 HELIX 8 8 SER A 256 PHE A 261 1 6 HELIX 9 9 ASP A 262 VAL A 280 1 19 HELIX 10 10 ASN A 287 GLY A 302 1 16 HELIX 11 11 GLY A 302 ARG A 308 1 7 HELIX 12 12 ASP A 313 ASN A 322 1 10 HELIX 13 13 THR A 325 HIS A 337 1 13 HELIX 14 14 SER A 339 ARG A 357 1 19 HELIX 15 15 ASP B 33 GLY B 53 1 21 HELIX 16 16 PHE B 54 VAL B 57 5 4 HELIX 17 17 HIS B 98 LEU B 108 1 11 HELIX 18 18 ASP B 112 VAL B 116 5 5 HELIX 19 19 TRP B 147 ARG B 162 1 16 HELIX 20 20 ASN B 183 GLY B 204 1 22 HELIX 21 21 ASP B 206 SER B 218 1 13 HELIX 22 22 THR B 240 SER B 248 1 9 HELIX 23 23 ASP B 262 ASN B 279 1 18 HELIX 24 24 ASN B 287 GLY B 302 1 16 HELIX 25 25 GLY B 302 ARG B 308 1 7 HELIX 26 26 ILE B 315 MET B 324 1 10 HELIX 27 27 THR B 325 THR B 334 1 10 HELIX 28 28 SER B 339 ARG B 357 1 19 SHEET 1 AA 5 ASP A 64 THR A 69 0 SHEET 2 AA 5 THR A 74 ASN A 79 -1 O THR A 74 N THR A 69 SHEET 3 AA 5 ILE A 85 THR A 89 -1 O THR A 86 N HIS A 77 SHEET 4 AA 5 ILE A 172 VAL A 176 -1 O TYR A 174 N THR A 89 SHEET 5 AA 5 LYS A 164 SER A 167 -1 O LYS A 164 N SER A 175 SHEET 1 BA 5 ASP B 64 THR B 69 0 SHEET 2 BA 5 THR B 74 ASN B 79 -1 O THR B 74 N THR B 69 SHEET 3 BA 5 THR B 84 THR B 89 -1 O THR B 84 N ASN B 79 SHEET 4 BA 5 ILE B 172 ASN B 179 -1 O TYR B 174 N THR B 89 SHEET 5 BA 5 LYS B 164 SER B 167 -1 O LYS B 164 N SER B 175 LINK O4 NM9 C 1 C1 NAG C 2 1555 1555 1.42 LINK O4 NAG C 2 C1 NM6 C 3 1555 1555 1.38 LINK O4 NM6 C 3 C1 NAG C 4 1555 1555 1.36 LINK O4 NM9 D 1 C1 NAG D 2 1555 1555 1.43 LINK O4 NAG D 2 C1 NM6 D 3 1555 1555 1.42 LINK O4 NM6 D 3 C1 NAG D 4 1555 1555 1.37 CISPEP 1 ASP A 82 GLY A 83 0 -20.01 CRYST1 49.206 112.814 61.571 90.00 93.52 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020323 0.000000 0.001250 0.00000 SCALE2 0.000000 0.008864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016272 0.00000