HEADER PROTEIN TRANSPORT 21-NOV-13 4CG6 TITLE CRYO-EM OF THE SEC61-COMPLEX BOUND TO THE 80S RIBOSOME TRANSLATING A TITLE 2 MEMBRANE-INSERTING SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT ALPHA ISOFORM 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SEC61 ALPHA-1; COMPND 5 OTHER_DETAILS: DATA-SUBSET RESULTED FROM COMPUTATIONAL SORTING; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA; COMPND 8 CHAIN: B; COMPND 9 OTHER_DETAILS: DATA-SUBSET RESULTED FROM COMPUTATIONAL SORTING; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA; COMPND 12 CHAIN: C; COMPND 13 OTHER_DETAILS: DATA-SUBSET RESULTED FROM COMPUTATIONAL SORTING; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: PEPTIDE; COMPND 16 CHAIN: D; COMPND 17 OTHER_DETAILS: DATA-SUBSET RESULTED FROM COMPUTATIONAL SORTING SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANIS LUPUS FAMILIARIS; SOURCE 3 ORGANISM_COMMON: DOG; SOURCE 4 ORGANISM_TAXID: 9615; SOURCE 5 ORGAN: PANCREAS; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: CANIS LUPUS FAMILIARIS; SOURCE 8 ORGANISM_COMMON: DOG; SOURCE 9 ORGANISM_TAXID: 9615; SOURCE 10 ORGAN: PANCREAS; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: CANIS LUPUS FAMILIARIS; SOURCE 13 ORGANISM_COMMON: DOG; SOURCE 14 ORGANISM_TAXID: 9615; SOURCE 15 ORGAN: PANCREAS; SOURCE 16 MOL_ID: 4; SOURCE 17 ORGANISM_SCIENTIFIC: CANIS LUPUS FAMILIARIS; SOURCE 18 ORGANISM_COMMON: DOG; SOURCE 19 ORGANISM_TAXID: 9615; SOURCE 20 ORGAN: PANCREAS KEYWDS PROTEIN TRANSPORT, CO-TRANSLATIONAL PROTEIN TRANSLOCATION EXPDTA ELECTRON MICROSCOPY AUTHOR M.GOGALA,T.BECKER,B.BEATRIX,C.BARRIO-GARCIA,O.BERNINGHAUSEN, AUTHOR 2 R.BECKMANN REVDAT 4 30-AUG-17 4CG6 1 REMARK REVDAT 3 19-FEB-14 4CG6 1 JRNL REVDAT 2 12-FEB-14 4CG6 1 JRNL REVDAT 1 05-FEB-14 4CG6 0 JRNL AUTH M.GOGALA,T.BECKER,B.BEATRIX,J.ARMACHE,C.BARRIO-GARCIA, JRNL AUTH 2 O.BERNINGHAUSEN,R.BECKMANN JRNL TITL STRUCTURES OF THE SEC61 COMPLEX ENGAGED IN NASCENT PEPTIDE JRNL TITL 2 TRANSLOCATION OR MEMBRANE INSERTION. JRNL REF NATURE V. 506 107 2014 JRNL REFN ISSN 0028-0836 JRNL PMID 24499919 JRNL DOI 10.1038/NATURE12950 REMARK 2 REMARK 2 RESOLUTION. 7.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : MAPPOS, COOT, MDFF, UCSF CHIMERA, REMARK 3 SIGNATURE, SPIDER REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 2WWB REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : METHOD--FLEXIBLE REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 7.800 REMARK 3 NUMBER OF PARTICLES : 30455 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD REMARK 3 -2512 (DEPOSITION ID: 12127). REMARK 4 REMARK 4 4CG6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE. REMARK 100 THE DEPOSITION ID IS D_1290059039. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CANIS FAMILIARIS SEC61 BOUND TO REMARK 245 A WHEAT GERM 80S-RNC REMARK 245 TRANSLATING THE MEMBRANE- REMARK 245 INSERTING LEPM-POLYPEPTIDE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : CARBON REMARK 245 SAMPLE VITRIFICATION DETAILS : VITRIFICATION 1 -- CRYOGEN- REMARK 245 ETHANE, HUMIDITY- 95, REMARK 245 INSTRUMENT- FEI VITROBOT MARK REMARK 245 IV, METHOD- BLOT FOR 3 SECONDS REMARK 245 BEFORE PLUNGING, REMARK 245 SAMPLE BUFFER : 30 MM HEPES/KOH 7.6, 10 MM REMARK 245 MG(OAC)2, 180 MM KOAC/HAC PH REMARK 245 7.6, 0.3 % DIGITONIN, 1 MM DTT REMARK 245 PH : 7.60 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 17-JUL-11 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : TVIPS TEMCAM-F416 (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1300.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 4000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 25.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : 148721 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ILE A 3 REMARK 465 LYS A 4 REMARK 465 PHE A 5 REMARK 465 LEU A 6 REMARK 465 GLU A 7 REMARK 465 VAL A 8 REMARK 465 ILE A 9 REMARK 465 LYS A 10 REMARK 465 PRO A 11 REMARK 465 PHE A 12 REMARK 465 CYS A 13 REMARK 465 VAL A 14 REMARK 465 ILE A 15 REMARK 465 LEU A 16 REMARK 465 PRO A 17 REMARK 465 GLU A 18 REMARK 465 ILE A 19 REMARK 465 GLN A 20 REMARK 465 LYS A 21 REMARK 465 PRO A 22 REMARK 465 GLU A 23 REMARK 465 ARG A 24 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 GLN B 3 REMARK 465 VAL B 4 REMARK 465 MET B 5 REMARK 465 GLN B 6 REMARK 465 MET C 1 REMARK 465 PRO C 2 REMARK 465 GLY C 3 REMARK 465 PRO C 4 REMARK 465 THR C 5 REMARK 465 PRO C 6 REMARK 465 SER C 7 REMARK 465 GLY C 8 REMARK 465 THR C 9 REMARK 465 ASN C 10 REMARK 465 VAL C 11 REMARK 465 GLY C 12 REMARK 465 SER C 13 REMARK 465 SER C 14 REMARK 465 GLY C 15 REMARK 465 ARG C 16 REMARK 465 SER C 17 REMARK 465 PRO C 18 REMARK 465 SER C 19 REMARK 465 LYS C 20 REMARK 465 ALA C 21 REMARK 465 VAL C 22 REMARK 465 ALA C 23 REMARK 465 ALA C 24 REMARK 465 ARG C 25 REMARK 465 ALA C 26 REMARK 465 ALA C 27 REMARK 465 GLY C 28 REMARK 465 SER C 29 REMARK 465 THR C 30 REMARK 465 VAL C 31 REMARK 465 ARG C 32 REMARK 465 GLN C 33 REMARK 465 ARG C 34 REMARK 465 LYS C 35 REMARK 465 ASN C 36 REMARK 465 ALA C 37 REMARK 465 SER C 38 REMARK 465 CYS C 39 REMARK 465 GLY C 40 REMARK 465 THR C 41 REMARK 465 ARG C 42 REMARK 465 SER C 43 REMARK 465 ALA C 44 REMARK 465 GLY C 45 REMARK 465 ARG C 46 REMARK 465 THR C 47 REMARK 465 THR C 48 REMARK 465 SER C 49 REMARK 465 ALA C 50 REMARK 465 GLY C 51 REMARK 465 THR C 52 REMARK 465 GLY C 53 REMARK 465 GLY C 54 REMARK 465 MET C 55 REMARK 465 TRP C 56 REMARK 465 ARG C 57 REMARK 465 PHE C 58 REMARK 465 TYR C 59 REMARK 465 THR C 60 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 476 C PHE A 476 O -0.229 REMARK 500 GLY B 68 C GLY B 68 O -0.232 REMARK 500 SER C 96 C SER C 96 O -0.229 REMARK 500 ILE D 17 C ILE D 17 O -0.229 REMARK 500 ILE D 17 C ILE D 17 OXT -0.229 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 60 N - CA - CB ANGL. DEV. = 11.9 DEGREES REMARK 500 PRO A 140 CA - N - CD ANGL. DEV. = -9.3 DEGREES REMARK 500 VAL A 227 CB - CA - C ANGL. DEV. = 11.8 DEGREES REMARK 500 PRO A 240 CA - N - CD ANGL. DEV. = -8.5 DEGREES REMARK 500 SER A 325 N - CA - CB ANGL. DEV. = 9.4 DEGREES REMARK 500 TYR A 336 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 TYR A 336 CB - CG - CD1 ANGL. DEV. = 4.6 DEGREES REMARK 500 PRO A 358 C - N - CD ANGL. DEV. = -18.2 DEGREES REMARK 500 TYR A 364 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 TYR A 364 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 GLU A 406 C - N - CA ANGL. DEV. = 17.3 DEGREES REMARK 500 GLY B 68 CA - C - O ANGL. DEV. = -11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 27 121.39 147.44 REMARK 500 LEU A 50 -114.67 -44.99 REMARK 500 ILE A 53 -132.47 56.57 REMARK 500 ALA A 59 173.70 38.38 REMARK 500 ASP A 60 -68.54 141.02 REMARK 500 PRO A 61 112.87 21.50 REMARK 500 PHE A 62 -171.71 173.48 REMARK 500 TYR A 63 -50.75 -136.04 REMARK 500 ALA A 70 62.47 -38.79 REMARK 500 ASN A 72 10.16 82.89 REMARK 500 THR A 75 -172.06 149.25 REMARK 500 LEU A 94 -41.11 -143.19 REMARK 500 ALA A 97 -133.23 -124.77 REMARK 500 LYS A 98 130.17 114.68 REMARK 500 ILE A 99 -92.14 176.45 REMARK 500 ILE A 100 72.65 -50.89 REMARK 500 GLU A 101 121.07 -10.40 REMARK 500 VAL A 102 7.85 159.12 REMARK 500 ASP A 104 8.31 81.07 REMARK 500 THR A 105 135.05 11.73 REMARK 500 PRO A 106 -1.23 -59.94 REMARK 500 LYS A 107 139.80 -26.65 REMARK 500 ASP A 108 -164.60 -63.69 REMARK 500 ARG A 109 -103.67 31.64 REMARK 500 ALA A 110 -157.48 164.63 REMARK 500 LEU A 111 102.25 101.99 REMARK 500 PHE A 112 -144.82 -92.39 REMARK 500 ASN A 113 -52.26 31.43 REMARK 500 SER A 141 -173.40 174.00 REMARK 500 GLU A 142 -164.59 76.14 REMARK 500 MET A 143 4.74 83.07 REMARK 500 ILE A 147 -133.17 61.63 REMARK 500 LEU A 175 -97.34 -146.11 REMARK 500 ILE A 179 -78.17 132.20 REMARK 500 MET A 207 2.14 177.32 REMARK 500 PHE A 209 64.68 -31.67 REMARK 500 GLU A 210 -60.44 76.25 REMARK 500 ALA A 212 8.34 87.04 REMARK 500 THR A 224 -171.32 173.29 REMARK 500 VAL A 227 -154.87 99.20 REMARK 500 ARG A 228 -120.58 70.96 REMARK 500 ARG A 231 -128.42 -164.80 REMARK 500 GLU A 232 1.90 -153.87 REMARK 500 ALA A 233 128.27 148.19 REMARK 500 TYR A 235 -163.49 70.88 REMARK 500 ARG A 236 -4.46 88.37 REMARK 500 ASN A 238 83.22 165.38 REMARK 500 PRO A 240 -9.90 38.22 REMARK 500 GLN A 259 37.51 -99.50 REMARK 500 ASP A 264 -93.86 -114.36 REMARK 500 REMARK 500 THIS ENTRY HAS 91 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 203 GLY A 204 -140.68 REMARK 500 TYR A 272 ARG A 273 -145.40 REMARK 500 SER A 313 GLY A 314 138.53 REMARK 500 GLY A 403 HIS A 404 -148.71 REMARK 500 GLU A 406 THR A 407 -140.48 REMARK 500 ASN A 414 ARG A 415 -148.76 REMARK 500 ALA A 440 ILE A 441 -147.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 276 0.17 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-2512 RELATED DB: EMDB REMARK 900 RELATED ID: 4CG5 RELATED DB: PDB REMARK 900 CRYO-EM OF THE SEC61-COMPLEX BOUND TO THE 80S RIBOSOME TRANSLATING REMARK 900 A SECRETORY SUBSTRATE REMARK 900 RELATED ID: 4CG7 RELATED DB: PDB REMARK 900 CRYO-EM OF THE SEC61-COMPLEX BOUND TO THE IDLE 80S RIBOSOME DBREF 4CG6 A 1 476 UNP P38377 S61A1_CANFA 1 476 DBREF 4CG6 B 1 68 UNP P60058 SC61G_CANFA 1 68 DBREF 4CG6 C 1 96 UNP P60467 SC61B_CANFA 1 96 DBREF 4CG6 D 1 17 PDB 4CG6 4CG6 1 17 SEQRES 1 A 476 MET ALA ILE LYS PHE LEU GLU VAL ILE LYS PRO PHE CYS SEQRES 2 A 476 VAL ILE LEU PRO GLU ILE GLN LYS PRO GLU ARG LYS ILE SEQRES 3 A 476 GLN PHE LYS GLU LYS VAL LEU TRP THR ALA ILE THR LEU SEQRES 4 A 476 PHE ILE PHE LEU VAL CYS CYS GLN ILE PRO LEU PHE GLY SEQRES 5 A 476 ILE MET SER SER ASP SER ALA ASP PRO PHE TYR TRP MET SEQRES 6 A 476 ARG VAL ILE LEU ALA SER ASN ARG GLY THR LEU MET GLU SEQRES 7 A 476 LEU GLY ILE SER PRO ILE VAL THR SER GLY LEU ILE MET SEQRES 8 A 476 GLN LEU LEU ALA GLY ALA LYS ILE ILE GLU VAL GLY ASP SEQRES 9 A 476 THR PRO LYS ASP ARG ALA LEU PHE ASN GLY ALA GLN LYS SEQRES 10 A 476 LEU PHE GLY MET ILE ILE THR ILE GLY GLN SER ILE VAL SEQRES 11 A 476 TYR VAL MET THR GLY MET TYR GLY ASP PRO SER GLU MET SEQRES 12 A 476 GLY ALA GLY ILE CYS LEU LEU ILE THR ILE GLN LEU PHE SEQRES 13 A 476 VAL ALA GLY LEU ILE VAL LEU LEU LEU ASP GLU LEU LEU SEQRES 14 A 476 GLN LYS GLY TYR GLY LEU GLY SER GLY ILE SER LEU PHE SEQRES 15 A 476 ILE ALA THR ASN ILE CYS GLU THR ILE VAL TRP LYS ALA SEQRES 16 A 476 PHE SER PRO THR THR VAL ASN THR GLY ARG GLY MET GLU SEQRES 17 A 476 PHE GLU GLY ALA ILE ILE ALA LEU PHE HIS LEU LEU ALA SEQRES 18 A 476 THR ARG THR ASP LYS VAL ARG ALA LEU ARG GLU ALA PHE SEQRES 19 A 476 TYR ARG GLN ASN LEU PRO ASN LEU MET ASN LEU ILE ALA SEQRES 20 A 476 THR ILE PHE VAL PHE ALA VAL VAL ILE TYR PHE GLN GLY SEQRES 21 A 476 PHE ARG VAL ASP LEU PRO ILE LYS SER ALA ARG TYR ARG SEQRES 22 A 476 GLY GLN TYR ASN THR TYR PRO ILE LYS LEU PHE TYR THR SEQRES 23 A 476 SER ASN ILE PRO ILE ILE LEU GLN SER ALA LEU VAL SER SEQRES 24 A 476 ASN LEU TYR VAL ILE SER GLN MET LEU SER ALA ARG PHE SEQRES 25 A 476 SER GLY ASN LEU LEU VAL SER LEU LEU GLY THR TRP SER SEQRES 26 A 476 ASP THR SER SER GLY GLY PRO ALA ARG ALA TYR PRO VAL SEQRES 27 A 476 GLY GLY LEU CYS HIS TYR LEU SER PRO PRO GLU SER PHE SEQRES 28 A 476 GLY SER VAL LEU GLU ASP PRO VAL HIS ALA VAL VAL TYR SEQRES 29 A 476 ILE VAL PHE MET LEU GLY SER CYS ALA PHE PHE SER LYS SEQRES 30 A 476 THR TRP ILE GLU VAL SER GLY SER SER ALA LYS ASP VAL SEQRES 31 A 476 ALA LYS GLN LEU LYS GLU GLN GLN MET VAL MET ARG GLY SEQRES 32 A 476 HIS ARG GLU THR SER MET VAL HIS GLU LEU ASN ARG TYR SEQRES 33 A 476 ILE PRO THR ALA ALA ALA PHE GLY GLY LEU CYS ILE GLY SEQRES 34 A 476 ALA LEU SER VAL LEU ALA ASP PHE LEU GLY ALA ILE GLY SEQRES 35 A 476 SER GLY THR GLY ILE LEU LEU ALA VAL THR ILE ILE TYR SEQRES 36 A 476 GLN TYR PHE GLU ILE PHE VAL LYS GLU GLN SER GLU VAL SEQRES 37 A 476 GLY SER MET GLY ALA LEU LEU PHE SEQRES 1 B 68 MET ASP GLN VAL MET GLN PHE VAL GLU PRO SER ARG GLN SEQRES 2 B 68 PHE VAL LYS ASP SER ILE ARG LEU VAL LYS ARG CYS THR SEQRES 3 B 68 LYS PRO ASP ARG LYS GLU PHE GLN LYS ILE ALA MET ALA SEQRES 4 B 68 THR ALA ILE GLY PHE ALA ILE MET GLY PHE ILE GLY PHE SEQRES 5 B 68 PHE VAL LYS LEU ILE HIS ILE PRO ILE ASN ASN ILE ILE SEQRES 6 B 68 VAL GLY GLY SEQRES 1 C 96 MET PRO GLY PRO THR PRO SER GLY THR ASN VAL GLY SER SEQRES 2 C 96 SER GLY ARG SER PRO SER LYS ALA VAL ALA ALA ARG ALA SEQRES 3 C 96 ALA GLY SER THR VAL ARG GLN ARG LYS ASN ALA SER CYS SEQRES 4 C 96 GLY THR ARG SER ALA GLY ARG THR THR SER ALA GLY THR SEQRES 5 C 96 GLY GLY MET TRP ARG PHE TYR THR GLU ASP SER PRO GLY SEQRES 6 C 96 LEU LYS VAL GLY PRO VAL PRO VAL LEU VAL MET SER LEU SEQRES 7 C 96 LEU PHE ILE ALA SER VAL PHE MET LEU HIS ILE TRP GLY SEQRES 8 C 96 LYS TYR THR ARG SER SEQRES 1 D 17 VAL PHE ILE VAL SER VAL GLY SER PHE ILE SER VAL LEU SEQRES 2 D 17 PHE ILE VAL ILE HELIX 1 1 GLN A 27 PHE A 51 1 25 HELIX 2 2 TYR A 63 ALA A 70 1 8 HELIX 3 3 ILE A 81 GLY A 96 1 16 HELIX 4 4 ASN A 113 VAL A 132 1 20 HELIX 5 5 CYS A 148 LYS A 171 1 24 HELIX 6 6 ILE A 179 SER A 197 1 19 HELIX 7 7 ILE A 214 THR A 222 1 9 HELIX 8 8 ASN A 241 PHE A 258 1 18 HELIX 9 9 SER A 287 PHE A 312 1 26 HELIX 10 10 LEU A 316 THR A 323 1 8 HELIX 11 11 GLY A 340 SER A 346 1 7 HELIX 12 12 GLU A 349 SER A 353 5 5 HELIX 13 13 HIS A 360 ILE A 380 1 21 HELIX 14 14 SER A 386 GLN A 397 1 12 HELIX 15 15 ARG A 415 ALA A 440 1 26 HELIX 16 16 GLY A 446 LYS A 463 1 18 HELIX 17 17 PHE B 7 CYS B 25 1 19 HELIX 18 18 ARG B 30 ILE B 59 1 30 HELIX 19 19 PRO B 60 ASN B 62 5 3 HELIX 20 20 GLY C 69 MET C 86 1 18 HELIX 21 21 VAL D 1 ILE D 17 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000