data_4CG7 # _entry.id 4CG7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.284 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4CG7 PDBE EBI-59036 WWPDB D_1290059036 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details EMDB EMD-2510 'associated EM volume' 'CRYO-EM OF THE SEC61-COMPLEX BOUND TO THE IDLE 80S RIBOSOME' PDB 4CG5 unspecified 'CRYO-EM OF THE SEC61-COMPLEX BOUND TO THE 80S RIBOSOME TRANSLATING A SECRETORY SUBSTRATE' PDB 4CG6 unspecified 'CRYO-EM OF THE SEC61-COMPLEX BOUND TO THE IDLE 80S RIBOSOME' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4CG7 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-11-21 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gogala, M.' 1 'Becker, T.' 2 'Beatrix, B.' 3 'Barrio-Garcia, C.' 4 'Berninghausen, O.' 5 'Beckmann, R.' 6 # _citation.id primary _citation.title 'Structures of the Sec61 Complex Engaged in Nascent Peptide Translocation or Membrane Insertion.' _citation.journal_abbrev Nature _citation.journal_volume 506 _citation.page_first 107 _citation.page_last ? _citation.year 2014 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24499919 _citation.pdbx_database_id_DOI 10.1038/NATURE12950 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Gogala, M.' 1 primary 'Becker, T.' 2 primary 'Beatrix, B.' 3 primary 'Armache, J.' 4 primary 'Barrio-Garcia, C.' 5 primary 'Berninghausen, O.' 6 primary 'Beckmann, R.' 7 # _cell.entry_id 4CG7 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CG7 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT ALPHA ISOFORM 1' 52279.379 1 ? ? ? ? 2 polymer nat 'PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA' 7752.325 1 ? ? ? ? 3 polymer nat 'TRANSPORT PROTEIN SEC61 SUBUNIT BETA' 3992.791 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'SEC61 ALPHA-1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELG ISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGL IVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSL LGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMV MRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF ; ;MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELG ISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGL IVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSL LGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMV MRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF ; A ? 2 'polypeptide(L)' no no MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGG MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGG B ? 3 'polypeptide(L)' no no EDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS EDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 ILE n 1 4 LYS n 1 5 PHE n 1 6 LEU n 1 7 GLU n 1 8 VAL n 1 9 ILE n 1 10 LYS n 1 11 PRO n 1 12 PHE n 1 13 CYS n 1 14 VAL n 1 15 ILE n 1 16 LEU n 1 17 PRO n 1 18 GLU n 1 19 ILE n 1 20 GLN n 1 21 LYS n 1 22 PRO n 1 23 GLU n 1 24 ARG n 1 25 LYS n 1 26 ILE n 1 27 GLN n 1 28 PHE n 1 29 LYS n 1 30 GLU n 1 31 LYS n 1 32 VAL n 1 33 LEU n 1 34 TRP n 1 35 THR n 1 36 ALA n 1 37 ILE n 1 38 THR n 1 39 LEU n 1 40 PHE n 1 41 ILE n 1 42 PHE n 1 43 LEU n 1 44 VAL n 1 45 CYS n 1 46 CYS n 1 47 GLN n 1 48 ILE n 1 49 PRO n 1 50 LEU n 1 51 PHE n 1 52 GLY n 1 53 ILE n 1 54 MET n 1 55 SER n 1 56 SER n 1 57 ASP n 1 58 SER n 1 59 ALA n 1 60 ASP n 1 61 PRO n 1 62 PHE n 1 63 TYR n 1 64 TRP n 1 65 MET n 1 66 ARG n 1 67 VAL n 1 68 ILE n 1 69 LEU n 1 70 ALA n 1 71 SER n 1 72 ASN n 1 73 ARG n 1 74 GLY n 1 75 THR n 1 76 LEU n 1 77 MET n 1 78 GLU n 1 79 LEU n 1 80 GLY n 1 81 ILE n 1 82 SER n 1 83 PRO n 1 84 ILE n 1 85 VAL n 1 86 THR n 1 87 SER n 1 88 GLY n 1 89 LEU n 1 90 ILE n 1 91 MET n 1 92 GLN n 1 93 LEU n 1 94 LEU n 1 95 ALA n 1 96 GLY n 1 97 ALA n 1 98 LYS n 1 99 ILE n 1 100 ILE n 1 101 GLU n 1 102 VAL n 1 103 GLY n 1 104 ASP n 1 105 THR n 1 106 PRO n 1 107 LYS n 1 108 ASP n 1 109 ARG n 1 110 ALA n 1 111 LEU n 1 112 PHE n 1 113 ASN n 1 114 GLY n 1 115 ALA n 1 116 GLN n 1 117 LYS n 1 118 LEU n 1 119 PHE n 1 120 GLY n 1 121 MET n 1 122 ILE n 1 123 ILE n 1 124 THR n 1 125 ILE n 1 126 GLY n 1 127 GLN n 1 128 SER n 1 129 ILE n 1 130 VAL n 1 131 TYR n 1 132 VAL n 1 133 MET n 1 134 THR n 1 135 GLY n 1 136 MET n 1 137 TYR n 1 138 GLY n 1 139 ASP n 1 140 PRO n 1 141 SER n 1 142 GLU n 1 143 MET n 1 144 GLY n 1 145 ALA n 1 146 GLY n 1 147 ILE n 1 148 CYS n 1 149 LEU n 1 150 LEU n 1 151 ILE n 1 152 THR n 1 153 ILE n 1 154 GLN n 1 155 LEU n 1 156 PHE n 1 157 VAL n 1 158 ALA n 1 159 GLY n 1 160 LEU n 1 161 ILE n 1 162 VAL n 1 163 LEU n 1 164 LEU n 1 165 LEU n 1 166 ASP n 1 167 GLU n 1 168 LEU n 1 169 LEU n 1 170 GLN n 1 171 LYS n 1 172 GLY n 1 173 TYR n 1 174 GLY n 1 175 LEU n 1 176 GLY n 1 177 SER n 1 178 GLY n 1 179 ILE n 1 180 SER n 1 181 LEU n 1 182 PHE n 1 183 ILE n 1 184 ALA n 1 185 THR n 1 186 ASN n 1 187 ILE n 1 188 CYS n 1 189 GLU n 1 190 THR n 1 191 ILE n 1 192 VAL n 1 193 TRP n 1 194 LYS n 1 195 ALA n 1 196 PHE n 1 197 SER n 1 198 PRO n 1 199 THR n 1 200 THR n 1 201 VAL n 1 202 ASN n 1 203 THR n 1 204 GLY n 1 205 ARG n 1 206 GLY n 1 207 MET n 1 208 GLU n 1 209 PHE n 1 210 GLU n 1 211 GLY n 1 212 ALA n 1 213 ILE n 1 214 ILE n 1 215 ALA n 1 216 LEU n 1 217 PHE n 1 218 HIS n 1 219 LEU n 1 220 LEU n 1 221 ALA n 1 222 THR n 1 223 ARG n 1 224 THR n 1 225 ASP n 1 226 LYS n 1 227 VAL n 1 228 ARG n 1 229 ALA n 1 230 LEU n 1 231 ARG n 1 232 GLU n 1 233 ALA n 1 234 PHE n 1 235 TYR n 1 236 ARG n 1 237 GLN n 1 238 ASN n 1 239 LEU n 1 240 PRO n 1 241 ASN n 1 242 LEU n 1 243 MET n 1 244 ASN n 1 245 LEU n 1 246 ILE n 1 247 ALA n 1 248 THR n 1 249 ILE n 1 250 PHE n 1 251 VAL n 1 252 PHE n 1 253 ALA n 1 254 VAL n 1 255 VAL n 1 256 ILE n 1 257 TYR n 1 258 PHE n 1 259 GLN n 1 260 GLY n 1 261 PHE n 1 262 ARG n 1 263 VAL n 1 264 ASP n 1 265 LEU n 1 266 PRO n 1 267 ILE n 1 268 LYS n 1 269 SER n 1 270 ALA n 1 271 ARG n 1 272 TYR n 1 273 ARG n 1 274 GLY n 1 275 GLN n 1 276 TYR n 1 277 ASN n 1 278 THR n 1 279 TYR n 1 280 PRO n 1 281 ILE n 1 282 LYS n 1 283 LEU n 1 284 PHE n 1 285 TYR n 1 286 THR n 1 287 SER n 1 288 ASN n 1 289 ILE n 1 290 PRO n 1 291 ILE n 1 292 ILE n 1 293 LEU n 1 294 GLN n 1 295 SER n 1 296 ALA n 1 297 LEU n 1 298 VAL n 1 299 SER n 1 300 ASN n 1 301 LEU n 1 302 TYR n 1 303 VAL n 1 304 ILE n 1 305 SER n 1 306 GLN n 1 307 MET n 1 308 LEU n 1 309 SER n 1 310 ALA n 1 311 ARG n 1 312 PHE n 1 313 SER n 1 314 GLY n 1 315 ASN n 1 316 LEU n 1 317 LEU n 1 318 VAL n 1 319 SER n 1 320 LEU n 1 321 LEU n 1 322 GLY n 1 323 THR n 1 324 TRP n 1 325 SER n 1 326 ASP n 1 327 THR n 1 328 SER n 1 329 SER n 1 330 GLY n 1 331 GLY n 1 332 PRO n 1 333 ALA n 1 334 ARG n 1 335 ALA n 1 336 TYR n 1 337 PRO n 1 338 VAL n 1 339 GLY n 1 340 GLY n 1 341 LEU n 1 342 CYS n 1 343 HIS n 1 344 TYR n 1 345 LEU n 1 346 SER n 1 347 PRO n 1 348 PRO n 1 349 GLU n 1 350 SER n 1 351 PHE n 1 352 GLY n 1 353 SER n 1 354 VAL n 1 355 LEU n 1 356 GLU n 1 357 ASP n 1 358 PRO n 1 359 VAL n 1 360 HIS n 1 361 ALA n 1 362 VAL n 1 363 VAL n 1 364 TYR n 1 365 ILE n 1 366 VAL n 1 367 PHE n 1 368 MET n 1 369 LEU n 1 370 GLY n 1 371 SER n 1 372 CYS n 1 373 ALA n 1 374 PHE n 1 375 PHE n 1 376 SER n 1 377 LYS n 1 378 THR n 1 379 TRP n 1 380 ILE n 1 381 GLU n 1 382 VAL n 1 383 SER n 1 384 GLY n 1 385 SER n 1 386 SER n 1 387 ALA n 1 388 LYS n 1 389 ASP n 1 390 VAL n 1 391 ALA n 1 392 LYS n 1 393 GLN n 1 394 LEU n 1 395 LYS n 1 396 GLU n 1 397 GLN n 1 398 GLN n 1 399 MET n 1 400 VAL n 1 401 MET n 1 402 ARG n 1 403 GLY n 1 404 HIS n 1 405 ARG n 1 406 GLU n 1 407 THR n 1 408 SER n 1 409 MET n 1 410 VAL n 1 411 HIS n 1 412 GLU n 1 413 LEU n 1 414 ASN n 1 415 ARG n 1 416 TYR n 1 417 ILE n 1 418 PRO n 1 419 THR n 1 420 ALA n 1 421 ALA n 1 422 ALA n 1 423 PHE n 1 424 GLY n 1 425 GLY n 1 426 LEU n 1 427 CYS n 1 428 ILE n 1 429 GLY n 1 430 ALA n 1 431 LEU n 1 432 SER n 1 433 VAL n 1 434 LEU n 1 435 ALA n 1 436 ASP n 1 437 PHE n 1 438 LEU n 1 439 GLY n 1 440 ALA n 1 441 ILE n 1 442 GLY n 1 443 SER n 1 444 GLY n 1 445 THR n 1 446 GLY n 1 447 ILE n 1 448 LEU n 1 449 LEU n 1 450 ALA n 1 451 VAL n 1 452 THR n 1 453 ILE n 1 454 ILE n 1 455 TYR n 1 456 GLN n 1 457 TYR n 1 458 PHE n 1 459 GLU n 1 460 ILE n 1 461 PHE n 1 462 VAL n 1 463 LYS n 1 464 GLU n 1 465 GLN n 1 466 SER n 1 467 GLU n 1 468 VAL n 1 469 GLY n 1 470 SER n 1 471 MET n 1 472 GLY n 1 473 ALA n 1 474 LEU n 1 475 LEU n 1 476 PHE n 2 1 MET n 2 2 ASP n 2 3 GLN n 2 4 VAL n 2 5 MET n 2 6 GLN n 2 7 PHE n 2 8 VAL n 2 9 GLU n 2 10 PRO n 2 11 SER n 2 12 ARG n 2 13 GLN n 2 14 PHE n 2 15 VAL n 2 16 LYS n 2 17 ASP n 2 18 SER n 2 19 ILE n 2 20 ARG n 2 21 LEU n 2 22 VAL n 2 23 LYS n 2 24 ARG n 2 25 CYS n 2 26 THR n 2 27 LYS n 2 28 PRO n 2 29 ASP n 2 30 ARG n 2 31 LYS n 2 32 GLU n 2 33 PHE n 2 34 GLN n 2 35 LYS n 2 36 ILE n 2 37 ALA n 2 38 MET n 2 39 ALA n 2 40 THR n 2 41 ALA n 2 42 ILE n 2 43 GLY n 2 44 PHE n 2 45 ALA n 2 46 ILE n 2 47 MET n 2 48 GLY n 2 49 PHE n 2 50 ILE n 2 51 GLY n 2 52 PHE n 2 53 PHE n 2 54 VAL n 2 55 LYS n 2 56 LEU n 2 57 ILE n 2 58 HIS n 2 59 ILE n 2 60 PRO n 2 61 ILE n 2 62 ASN n 2 63 ASN n 2 64 ILE n 2 65 ILE n 2 66 VAL n 2 67 GLY n 2 68 GLY n 3 1 GLU n 3 2 ASP n 3 3 SER n 3 4 PRO n 3 5 GLY n 3 6 LEU n 3 7 LYS n 3 8 VAL n 3 9 GLY n 3 10 PRO n 3 11 VAL n 3 12 PRO n 3 13 VAL n 3 14 LEU n 3 15 VAL n 3 16 MET n 3 17 SER n 3 18 LEU n 3 19 LEU n 3 20 PHE n 3 21 ILE n 3 22 ALA n 3 23 SER n 3 24 VAL n 3 25 PHE n 3 26 MET n 3 27 LEU n 3 28 HIS n 3 29 ILE n 3 30 TRP n 3 31 GLY n 3 32 LYS n 3 33 TYR n 3 34 THR n 3 35 ARG n 3 36 SER n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? DOG 'CANIS LUPUS FAMILIARIS' 9615 ? ? ? ? ? ? ? ? ? ? ? PANCREAS ? ? ? ? ? 2 1 sample ? ? DOG 'CANIS LUPUS FAMILIARIS' 9615 ? ? ? ? ? ? ? ? ? ? ? PANCREAS ? ? ? ? ? 3 1 sample ? ? DOG 'CANIS LUPUS FAMILIARIS' 9615 ? ? ? ? ? ? ? ? ? ? ? PANCREAS ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP S61A1_CANFA 1 ? ? P38377 ? 2 UNP SC61G_CANFA 2 ? ? P60058 ? 3 PDB 4CG7 3 ? ? 4CG7 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4CG7 A 1 ? 476 ? P38377 1 ? 476 ? 1 476 2 2 4CG7 B 1 ? 68 ? P60058 1 ? 68 ? 1 68 3 3 4CG7 C 1 ? 36 ? 4CG7 61 ? 96 ? 61 96 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4CG7 _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 4CG7 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 6.90 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 4252 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 4252 _refine_hist.d_res_high 6.90 _refine_hist.d_res_low . # _struct.entry_id 4CG7 _struct.title 'Cryo-EM of the Sec61-complex bound to the idle 80S ribosome' _struct.pdbx_descriptor ;PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT ALPHA ISOFORM 1, PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA, TRANSPORT PROTEIN SEC61 SUBUNIT BETA ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4CG7 _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text 'PROTEIN TRANSPORT, CO-TRANSLATIONAL PROTEIN TRANSLOCATION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 27 ? CYS A 46 ? GLN A 27 CYS A 46 1 ? 20 HELX_P HELX_P2 2 TRP A 64 ? ALA A 70 ? TRP A 64 ALA A 70 1 ? 7 HELX_P HELX_P3 3 SER A 82 ? LYS A 98 ? SER A 82 LYS A 98 1 ? 17 HELX_P HELX_P4 4 GLY A 103 ? GLN A 127 ? GLY A 103 GLN A 127 1 ? 25 HELX_P HELX_P5 5 GLN A 127 ? GLY A 135 ? GLN A 127 GLY A 135 1 ? 9 HELX_P HELX_P6 6 ALA A 145 ? CYS A 148 ? ALA A 145 CYS A 148 5 ? 4 HELX_P HELX_P7 7 LEU A 149 ? GLN A 170 ? LEU A 149 GLN A 170 1 ? 22 HELX_P HELX_P8 8 GLY A 178 ? PHE A 196 ? GLY A 178 PHE A 196 1 ? 19 HELX_P HELX_P9 9 ALA A 215 ? ALA A 221 ? ALA A 215 ALA A 221 1 ? 7 HELX_P HELX_P10 10 TYR A 235 ? GLN A 237 ? TYR A 235 GLN A 237 5 ? 3 HELX_P HELX_P11 11 ASN A 238 ? PHE A 261 ? ASN A 238 PHE A 261 1 ? 24 HELX_P HELX_P12 12 LYS A 282 ? SER A 313 ? LYS A 282 SER A 313 1 ? 32 HELX_P HELX_P13 13 LEU A 317 ? GLY A 322 ? LEU A 317 GLY A 322 1 ? 6 HELX_P HELX_P14 14 GLY A 340 ? LEU A 345 ? GLY A 340 LEU A 345 1 ? 6 HELX_P HELX_P15 15 VAL A 359 ? TRP A 379 ? VAL A 359 TRP A 379 1 ? 21 HELX_P HELX_P16 16 SER A 386 ? GLN A 398 ? SER A 386 GLN A 398 1 ? 13 HELX_P HELX_P17 17 HIS A 411 ? ALA A 440 ? HIS A 411 ALA A 440 1 ? 30 HELX_P HELX_P18 18 THR A 445 ? GLU A 464 ? THR A 445 GLU A 464 1 ? 20 HELX_P HELX_P19 19 PHE B 7 ? CYS B 25 ? PHE B 7 CYS B 25 1 ? 19 HELX_P HELX_P20 20 ARG B 30 ? ILE B 59 ? ARG B 30 ILE B 59 1 ? 30 HELX_P HELX_P21 21 PRO B 60 ? ASN B 62 ? PRO B 60 ASN B 62 5 ? 3 HELX_P HELX_P22 22 VAL C 11 ? HIS C 28 ? VAL C 71 HIS C 88 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 4CG7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4CG7 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ALA 2 2 ? ? ? A . n A 1 3 ILE 3 3 ? ? ? A . n A 1 4 LYS 4 4 ? ? ? A . n A 1 5 PHE 5 5 ? ? ? A . n A 1 6 LEU 6 6 ? ? ? A . n A 1 7 GLU 7 7 ? ? ? A . n A 1 8 VAL 8 8 ? ? ? A . n A 1 9 ILE 9 9 ? ? ? A . n A 1 10 LYS 10 10 ? ? ? A . n A 1 11 PRO 11 11 ? ? ? A . n A 1 12 PHE 12 12 ? ? ? A . n A 1 13 CYS 13 13 ? ? ? A . n A 1 14 VAL 14 14 ? ? ? A . n A 1 15 ILE 15 15 ? ? ? A . n A 1 16 LEU 16 16 ? ? ? A . n A 1 17 PRO 17 17 ? ? ? A . n A 1 18 GLU 18 18 ? ? ? A . n A 1 19 ILE 19 19 ? ? ? A . n A 1 20 GLN 20 20 ? ? ? A . n A 1 21 LYS 21 21 ? ? ? A . n A 1 22 PRO 22 22 ? ? ? A . n A 1 23 GLU 23 23 ? ? ? A . n A 1 24 ARG 24 24 ? ? ? A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 TRP 34 34 34 TRP TRP A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 PHE 42 42 42 PHE PHE A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 CYS 45 45 45 CYS CYS A . n A 1 46 CYS 46 46 46 CYS CYS A . n A 1 47 GLN 47 47 47 GLN GLN A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 PRO 49 49 49 PRO PRO A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 PHE 51 51 51 PHE PHE A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 MET 54 54 54 MET MET A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 ASP 57 57 57 ASP ASP A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 PRO 61 61 61 PRO PRO A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 TYR 63 63 63 TYR TYR A . n A 1 64 TRP 64 64 64 TRP TRP A . n A 1 65 MET 65 65 65 MET MET A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 MET 77 77 77 MET MET A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 ILE 81 81 81 ILE ILE A . n A 1 82 SER 82 82 82 SER SER A . n A 1 83 PRO 83 83 83 PRO PRO A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 MET 91 91 91 MET MET A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 ILE 100 100 100 ILE ILE A . n A 1 101 GLU 101 101 101 GLU GLU A . n A 1 102 VAL 102 102 102 VAL VAL A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 ASP 104 104 104 ASP ASP A . n A 1 105 THR 105 105 105 THR THR A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 ASP 108 108 108 ASP ASP A . n A 1 109 ARG 109 109 109 ARG ARG A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 PHE 112 112 112 PHE PHE A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 ALA 115 115 115 ALA ALA A . n A 1 116 GLN 116 116 116 GLN GLN A . n A 1 117 LYS 117 117 117 LYS LYS A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 PHE 119 119 119 PHE PHE A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 MET 121 121 121 MET MET A . n A 1 122 ILE 122 122 122 ILE ILE A . n A 1 123 ILE 123 123 123 ILE ILE A . n A 1 124 THR 124 124 124 THR THR A . n A 1 125 ILE 125 125 125 ILE ILE A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 GLN 127 127 127 GLN GLN A . n A 1 128 SER 128 128 128 SER SER A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 TYR 131 131 131 TYR TYR A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 MET 133 133 133 MET MET A . n A 1 134 THR 134 134 134 THR THR A . n A 1 135 GLY 135 135 135 GLY GLY A . n A 1 136 MET 136 136 136 MET MET A . n A 1 137 TYR 137 137 137 TYR TYR A . n A 1 138 GLY 138 138 138 GLY GLY A . n A 1 139 ASP 139 139 139 ASP ASP A . n A 1 140 PRO 140 140 140 PRO PRO A . n A 1 141 SER 141 141 141 SER SER A . n A 1 142 GLU 142 142 142 GLU GLU A . n A 1 143 MET 143 143 143 MET MET A . n A 1 144 GLY 144 144 144 GLY GLY A . n A 1 145 ALA 145 145 145 ALA ALA A . n A 1 146 GLY 146 146 146 GLY GLY A . n A 1 147 ILE 147 147 147 ILE ILE A . n A 1 148 CYS 148 148 148 CYS CYS A . n A 1 149 LEU 149 149 149 LEU LEU A . n A 1 150 LEU 150 150 150 LEU LEU A . n A 1 151 ILE 151 151 151 ILE ILE A . n A 1 152 THR 152 152 152 THR THR A . n A 1 153 ILE 153 153 153 ILE ILE A . n A 1 154 GLN 154 154 154 GLN GLN A . n A 1 155 LEU 155 155 155 LEU LEU A . n A 1 156 PHE 156 156 156 PHE PHE A . n A 1 157 VAL 157 157 157 VAL VAL A . n A 1 158 ALA 158 158 158 ALA ALA A . n A 1 159 GLY 159 159 159 GLY GLY A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 ILE 161 161 161 ILE ILE A . n A 1 162 VAL 162 162 162 VAL VAL A . n A 1 163 LEU 163 163 163 LEU LEU A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 LEU 165 165 165 LEU LEU A . n A 1 166 ASP 166 166 166 ASP ASP A . n A 1 167 GLU 167 167 167 GLU GLU A . n A 1 168 LEU 168 168 168 LEU LEU A . n A 1 169 LEU 169 169 169 LEU LEU A . n A 1 170 GLN 170 170 170 GLN GLN A . n A 1 171 LYS 171 171 171 LYS LYS A . n A 1 172 GLY 172 172 172 GLY GLY A . n A 1 173 TYR 173 173 173 TYR TYR A . n A 1 174 GLY 174 174 174 GLY GLY A . n A 1 175 LEU 175 175 175 LEU LEU A . n A 1 176 GLY 176 176 176 GLY GLY A . n A 1 177 SER 177 177 177 SER SER A . n A 1 178 GLY 178 178 178 GLY GLY A . n A 1 179 ILE 179 179 179 ILE ILE A . n A 1 180 SER 180 180 180 SER SER A . n A 1 181 LEU 181 181 181 LEU LEU A . n A 1 182 PHE 182 182 182 PHE PHE A . n A 1 183 ILE 183 183 183 ILE ILE A . n A 1 184 ALA 184 184 184 ALA ALA A . n A 1 185 THR 185 185 185 THR THR A . n A 1 186 ASN 186 186 186 ASN ASN A . n A 1 187 ILE 187 187 187 ILE ILE A . n A 1 188 CYS 188 188 188 CYS CYS A . n A 1 189 GLU 189 189 189 GLU GLU A . n A 1 190 THR 190 190 190 THR THR A . n A 1 191 ILE 191 191 191 ILE ILE A . n A 1 192 VAL 192 192 192 VAL VAL A . n A 1 193 TRP 193 193 193 TRP TRP A . n A 1 194 LYS 194 194 194 LYS LYS A . n A 1 195 ALA 195 195 195 ALA ALA A . n A 1 196 PHE 196 196 196 PHE PHE A . n A 1 197 SER 197 197 197 SER SER A . n A 1 198 PRO 198 198 198 PRO PRO A . n A 1 199 THR 199 199 199 THR THR A . n A 1 200 THR 200 200 200 THR THR A . n A 1 201 VAL 201 201 201 VAL VAL A . n A 1 202 ASN 202 202 202 ASN ASN A . n A 1 203 THR 203 203 203 THR THR A . n A 1 204 GLY 204 204 204 GLY GLY A . n A 1 205 ARG 205 205 205 ARG ARG A . n A 1 206 GLY 206 206 206 GLY GLY A . n A 1 207 MET 207 207 207 MET MET A . n A 1 208 GLU 208 208 208 GLU GLU A . n A 1 209 PHE 209 209 209 PHE PHE A . n A 1 210 GLU 210 210 210 GLU GLU A . n A 1 211 GLY 211 211 211 GLY GLY A . n A 1 212 ALA 212 212 212 ALA ALA A . n A 1 213 ILE 213 213 213 ILE ILE A . n A 1 214 ILE 214 214 214 ILE ILE A . n A 1 215 ALA 215 215 215 ALA ALA A . n A 1 216 LEU 216 216 216 LEU LEU A . n A 1 217 PHE 217 217 217 PHE PHE A . n A 1 218 HIS 218 218 218 HIS HIS A . n A 1 219 LEU 219 219 219 LEU LEU A . n A 1 220 LEU 220 220 220 LEU LEU A . n A 1 221 ALA 221 221 221 ALA ALA A . n A 1 222 THR 222 222 222 THR THR A . n A 1 223 ARG 223 223 223 ARG ARG A . n A 1 224 THR 224 224 224 THR THR A . n A 1 225 ASP 225 225 225 ASP ASP A . n A 1 226 LYS 226 226 226 LYS LYS A . n A 1 227 VAL 227 227 227 VAL VAL A . n A 1 228 ARG 228 228 228 ARG ARG A . n A 1 229 ALA 229 229 229 ALA ALA A . n A 1 230 LEU 230 230 230 LEU LEU A . n A 1 231 ARG 231 231 231 ARG ARG A . n A 1 232 GLU 232 232 232 GLU GLU A . n A 1 233 ALA 233 233 233 ALA ALA A . n A 1 234 PHE 234 234 234 PHE PHE A . n A 1 235 TYR 235 235 235 TYR TYR A . n A 1 236 ARG 236 236 236 ARG ARG A . n A 1 237 GLN 237 237 237 GLN GLN A . n A 1 238 ASN 238 238 238 ASN ASN A . n A 1 239 LEU 239 239 239 LEU LEU A . n A 1 240 PRO 240 240 240 PRO PRO A . n A 1 241 ASN 241 241 241 ASN ASN A . n A 1 242 LEU 242 242 242 LEU LEU A . n A 1 243 MET 243 243 243 MET MET A . n A 1 244 ASN 244 244 244 ASN ASN A . n A 1 245 LEU 245 245 245 LEU LEU A . n A 1 246 ILE 246 246 246 ILE ILE A . n A 1 247 ALA 247 247 247 ALA ALA A . n A 1 248 THR 248 248 248 THR THR A . n A 1 249 ILE 249 249 249 ILE ILE A . n A 1 250 PHE 250 250 250 PHE PHE A . n A 1 251 VAL 251 251 251 VAL VAL A . n A 1 252 PHE 252 252 252 PHE PHE A . n A 1 253 ALA 253 253 253 ALA ALA A . n A 1 254 VAL 254 254 254 VAL VAL A . n A 1 255 VAL 255 255 255 VAL VAL A . n A 1 256 ILE 256 256 256 ILE ILE A . n A 1 257 TYR 257 257 257 TYR TYR A . n A 1 258 PHE 258 258 258 PHE PHE A . n A 1 259 GLN 259 259 259 GLN GLN A . n A 1 260 GLY 260 260 260 GLY GLY A . n A 1 261 PHE 261 261 261 PHE PHE A . n A 1 262 ARG 262 262 262 ARG ARG A . n A 1 263 VAL 263 263 263 VAL VAL A . n A 1 264 ASP 264 264 264 ASP ASP A . n A 1 265 LEU 265 265 265 LEU LEU A . n A 1 266 PRO 266 266 266 PRO PRO A . n A 1 267 ILE 267 267 267 ILE ILE A . n A 1 268 LYS 268 268 268 LYS LYS A . n A 1 269 SER 269 269 269 SER SER A . n A 1 270 ALA 270 270 270 ALA ALA A . n A 1 271 ARG 271 271 271 ARG ARG A . n A 1 272 TYR 272 272 272 TYR TYR A . n A 1 273 ARG 273 273 273 ARG ARG A . n A 1 274 GLY 274 274 274 GLY GLY A . n A 1 275 GLN 275 275 275 GLN GLN A . n A 1 276 TYR 276 276 276 TYR TYR A . n A 1 277 ASN 277 277 277 ASN ASN A . n A 1 278 THR 278 278 278 THR THR A . n A 1 279 TYR 279 279 279 TYR TYR A . n A 1 280 PRO 280 280 280 PRO PRO A . n A 1 281 ILE 281 281 281 ILE ILE A . n A 1 282 LYS 282 282 282 LYS LYS A . n A 1 283 LEU 283 283 283 LEU LEU A . n A 1 284 PHE 284 284 284 PHE PHE A . n A 1 285 TYR 285 285 285 TYR TYR A . n A 1 286 THR 286 286 286 THR THR A . n A 1 287 SER 287 287 287 SER SER A . n A 1 288 ASN 288 288 288 ASN ASN A . n A 1 289 ILE 289 289 289 ILE ILE A . n A 1 290 PRO 290 290 290 PRO PRO A . n A 1 291 ILE 291 291 291 ILE ILE A . n A 1 292 ILE 292 292 292 ILE ILE A . n A 1 293 LEU 293 293 293 LEU LEU A . n A 1 294 GLN 294 294 294 GLN GLN A . n A 1 295 SER 295 295 295 SER SER A . n A 1 296 ALA 296 296 296 ALA ALA A . n A 1 297 LEU 297 297 297 LEU LEU A . n A 1 298 VAL 298 298 298 VAL VAL A . n A 1 299 SER 299 299 299 SER SER A . n A 1 300 ASN 300 300 300 ASN ASN A . n A 1 301 LEU 301 301 301 LEU LEU A . n A 1 302 TYR 302 302 302 TYR TYR A . n A 1 303 VAL 303 303 303 VAL VAL A . n A 1 304 ILE 304 304 304 ILE ILE A . n A 1 305 SER 305 305 305 SER SER A . n A 1 306 GLN 306 306 306 GLN GLN A . n A 1 307 MET 307 307 307 MET MET A . n A 1 308 LEU 308 308 308 LEU LEU A . n A 1 309 SER 309 309 309 SER SER A . n A 1 310 ALA 310 310 310 ALA ALA A . n A 1 311 ARG 311 311 311 ARG ARG A . n A 1 312 PHE 312 312 312 PHE PHE A . n A 1 313 SER 313 313 313 SER SER A . n A 1 314 GLY 314 314 314 GLY GLY A . n A 1 315 ASN 315 315 315 ASN ASN A . n A 1 316 LEU 316 316 316 LEU LEU A . n A 1 317 LEU 317 317 317 LEU LEU A . n A 1 318 VAL 318 318 318 VAL VAL A . n A 1 319 SER 319 319 319 SER SER A . n A 1 320 LEU 320 320 320 LEU LEU A . n A 1 321 LEU 321 321 321 LEU LEU A . n A 1 322 GLY 322 322 322 GLY GLY A . n A 1 323 THR 323 323 323 THR THR A . n A 1 324 TRP 324 324 324 TRP TRP A . n A 1 325 SER 325 325 325 SER SER A . n A 1 326 ASP 326 326 326 ASP ASP A . n A 1 327 THR 327 327 327 THR THR A . n A 1 328 SER 328 328 328 SER SER A . n A 1 329 SER 329 329 329 SER SER A . n A 1 330 GLY 330 330 330 GLY GLY A . n A 1 331 GLY 331 331 331 GLY GLY A . n A 1 332 PRO 332 332 332 PRO PRO A . n A 1 333 ALA 333 333 333 ALA ALA A . n A 1 334 ARG 334 334 334 ARG ARG A . n A 1 335 ALA 335 335 335 ALA ALA A . n A 1 336 TYR 336 336 336 TYR TYR A . n A 1 337 PRO 337 337 337 PRO PRO A . n A 1 338 VAL 338 338 338 VAL VAL A . n A 1 339 GLY 339 339 339 GLY GLY A . n A 1 340 GLY 340 340 340 GLY GLY A . n A 1 341 LEU 341 341 341 LEU LEU A . n A 1 342 CYS 342 342 342 CYS CYS A . n A 1 343 HIS 343 343 343 HIS HIS A . n A 1 344 TYR 344 344 344 TYR TYR A . n A 1 345 LEU 345 345 345 LEU LEU A . n A 1 346 SER 346 346 346 SER SER A . n A 1 347 PRO 347 347 347 PRO PRO A . n A 1 348 PRO 348 348 348 PRO PRO A . n A 1 349 GLU 349 349 349 GLU GLU A . n A 1 350 SER 350 350 350 SER SER A . n A 1 351 PHE 351 351 351 PHE PHE A . n A 1 352 GLY 352 352 352 GLY GLY A . n A 1 353 SER 353 353 353 SER SER A . n A 1 354 VAL 354 354 354 VAL VAL A . n A 1 355 LEU 355 355 355 LEU LEU A . n A 1 356 GLU 356 356 356 GLU GLU A . n A 1 357 ASP 357 357 357 ASP ASP A . n A 1 358 PRO 358 358 358 PRO PRO A . n A 1 359 VAL 359 359 359 VAL VAL A . n A 1 360 HIS 360 360 360 HIS HIS A . n A 1 361 ALA 361 361 361 ALA ALA A . n A 1 362 VAL 362 362 362 VAL VAL A . n A 1 363 VAL 363 363 363 VAL VAL A . n A 1 364 TYR 364 364 364 TYR TYR A . n A 1 365 ILE 365 365 365 ILE ILE A . n A 1 366 VAL 366 366 366 VAL VAL A . n A 1 367 PHE 367 367 367 PHE PHE A . n A 1 368 MET 368 368 368 MET MET A . n A 1 369 LEU 369 369 369 LEU LEU A . n A 1 370 GLY 370 370 370 GLY GLY A . n A 1 371 SER 371 371 371 SER SER A . n A 1 372 CYS 372 372 372 CYS CYS A . n A 1 373 ALA 373 373 373 ALA ALA A . n A 1 374 PHE 374 374 374 PHE PHE A . n A 1 375 PHE 375 375 375 PHE PHE A . n A 1 376 SER 376 376 376 SER SER A . n A 1 377 LYS 377 377 377 LYS LYS A . n A 1 378 THR 378 378 378 THR THR A . n A 1 379 TRP 379 379 379 TRP TRP A . n A 1 380 ILE 380 380 380 ILE ILE A . n A 1 381 GLU 381 381 381 GLU GLU A . n A 1 382 VAL 382 382 382 VAL VAL A . n A 1 383 SER 383 383 383 SER SER A . n A 1 384 GLY 384 384 384 GLY GLY A . n A 1 385 SER 385 385 385 SER SER A . n A 1 386 SER 386 386 386 SER SER A . n A 1 387 ALA 387 387 387 ALA ALA A . n A 1 388 LYS 388 388 388 LYS LYS A . n A 1 389 ASP 389 389 389 ASP ASP A . n A 1 390 VAL 390 390 390 VAL VAL A . n A 1 391 ALA 391 391 391 ALA ALA A . n A 1 392 LYS 392 392 392 LYS LYS A . n A 1 393 GLN 393 393 393 GLN GLN A . n A 1 394 LEU 394 394 394 LEU LEU A . n A 1 395 LYS 395 395 395 LYS LYS A . n A 1 396 GLU 396 396 396 GLU GLU A . n A 1 397 GLN 397 397 397 GLN GLN A . n A 1 398 GLN 398 398 398 GLN GLN A . n A 1 399 MET 399 399 399 MET MET A . n A 1 400 VAL 400 400 400 VAL VAL A . n A 1 401 MET 401 401 401 MET MET A . n A 1 402 ARG 402 402 402 ARG ARG A . n A 1 403 GLY 403 403 403 GLY GLY A . n A 1 404 HIS 404 404 404 HIS HIS A . n A 1 405 ARG 405 405 405 ARG ARG A . n A 1 406 GLU 406 406 406 GLU GLU A . n A 1 407 THR 407 407 407 THR THR A . n A 1 408 SER 408 408 408 SER SER A . n A 1 409 MET 409 409 409 MET MET A . n A 1 410 VAL 410 410 410 VAL VAL A . n A 1 411 HIS 411 411 411 HIS HIS A . n A 1 412 GLU 412 412 412 GLU GLU A . n A 1 413 LEU 413 413 413 LEU LEU A . n A 1 414 ASN 414 414 414 ASN ASN A . n A 1 415 ARG 415 415 415 ARG ARG A . n A 1 416 TYR 416 416 416 TYR TYR A . n A 1 417 ILE 417 417 417 ILE ILE A . n A 1 418 PRO 418 418 418 PRO PRO A . n A 1 419 THR 419 419 419 THR THR A . n A 1 420 ALA 420 420 420 ALA ALA A . n A 1 421 ALA 421 421 421 ALA ALA A . n A 1 422 ALA 422 422 422 ALA ALA A . n A 1 423 PHE 423 423 423 PHE PHE A . n A 1 424 GLY 424 424 424 GLY GLY A . n A 1 425 GLY 425 425 425 GLY GLY A . n A 1 426 LEU 426 426 426 LEU LEU A . n A 1 427 CYS 427 427 427 CYS CYS A . n A 1 428 ILE 428 428 428 ILE ILE A . n A 1 429 GLY 429 429 429 GLY GLY A . n A 1 430 ALA 430 430 430 ALA ALA A . n A 1 431 LEU 431 431 431 LEU LEU A . n A 1 432 SER 432 432 432 SER SER A . n A 1 433 VAL 433 433 433 VAL VAL A . n A 1 434 LEU 434 434 434 LEU LEU A . n A 1 435 ALA 435 435 435 ALA ALA A . n A 1 436 ASP 436 436 436 ASP ASP A . n A 1 437 PHE 437 437 437 PHE PHE A . n A 1 438 LEU 438 438 438 LEU LEU A . n A 1 439 GLY 439 439 439 GLY GLY A . n A 1 440 ALA 440 440 440 ALA ALA A . n A 1 441 ILE 441 441 441 ILE ILE A . n A 1 442 GLY 442 442 442 GLY GLY A . n A 1 443 SER 443 443 443 SER SER A . n A 1 444 GLY 444 444 444 GLY GLY A . n A 1 445 THR 445 445 445 THR THR A . n A 1 446 GLY 446 446 446 GLY GLY A . n A 1 447 ILE 447 447 447 ILE ILE A . n A 1 448 LEU 448 448 448 LEU LEU A . n A 1 449 LEU 449 449 449 LEU LEU A . n A 1 450 ALA 450 450 450 ALA ALA A . n A 1 451 VAL 451 451 451 VAL VAL A . n A 1 452 THR 452 452 452 THR THR A . n A 1 453 ILE 453 453 453 ILE ILE A . n A 1 454 ILE 454 454 454 ILE ILE A . n A 1 455 TYR 455 455 455 TYR TYR A . n A 1 456 GLN 456 456 456 GLN GLN A . n A 1 457 TYR 457 457 457 TYR TYR A . n A 1 458 PHE 458 458 458 PHE PHE A . n A 1 459 GLU 459 459 459 GLU GLU A . n A 1 460 ILE 460 460 460 ILE ILE A . n A 1 461 PHE 461 461 461 PHE PHE A . n A 1 462 VAL 462 462 462 VAL VAL A . n A 1 463 LYS 463 463 463 LYS LYS A . n A 1 464 GLU 464 464 464 GLU GLU A . n A 1 465 GLN 465 465 465 GLN GLN A . n A 1 466 SER 466 466 466 SER SER A . n A 1 467 GLU 467 467 467 GLU GLU A . n A 1 468 VAL 468 468 468 VAL VAL A . n A 1 469 GLY 469 469 469 GLY GLY A . n A 1 470 SER 470 470 470 SER SER A . n A 1 471 MET 471 471 471 MET MET A . n A 1 472 GLY 472 472 472 GLY GLY A . n A 1 473 ALA 473 473 473 ALA ALA A . n A 1 474 LEU 474 474 474 LEU LEU A . n A 1 475 LEU 475 475 475 LEU LEU A . n A 1 476 PHE 476 476 476 PHE PHE A . n B 2 1 MET 1 1 ? ? ? B . n B 2 2 ASP 2 2 ? ? ? B . n B 2 3 GLN 3 3 ? ? ? B . n B 2 4 VAL 4 4 ? ? ? B . n B 2 5 MET 5 5 ? ? ? B . n B 2 6 GLN 6 6 ? ? ? B . n B 2 7 PHE 7 7 7 PHE PHE B . n B 2 8 VAL 8 8 8 VAL VAL B . n B 2 9 GLU 9 9 9 GLU GLU B . n B 2 10 PRO 10 10 10 PRO PRO B . n B 2 11 SER 11 11 11 SER SER B . n B 2 12 ARG 12 12 12 ARG ARG B . n B 2 13 GLN 13 13 13 GLN GLN B . n B 2 14 PHE 14 14 14 PHE PHE B . n B 2 15 VAL 15 15 15 VAL VAL B . n B 2 16 LYS 16 16 16 LYS LYS B . n B 2 17 ASP 17 17 17 ASP ASP B . n B 2 18 SER 18 18 18 SER SER B . n B 2 19 ILE 19 19 19 ILE ILE B . n B 2 20 ARG 20 20 20 ARG ARG B . n B 2 21 LEU 21 21 21 LEU LEU B . n B 2 22 VAL 22 22 22 VAL VAL B . n B 2 23 LYS 23 23 23 LYS LYS B . n B 2 24 ARG 24 24 24 ARG ARG B . n B 2 25 CYS 25 25 25 CYS CYS B . n B 2 26 THR 26 26 26 THR THR B . n B 2 27 LYS 27 27 27 LYS LYS B . n B 2 28 PRO 28 28 28 PRO PRO B . n B 2 29 ASP 29 29 29 ASP ASP B . n B 2 30 ARG 30 30 30 ARG ARG B . n B 2 31 LYS 31 31 31 LYS LYS B . n B 2 32 GLU 32 32 32 GLU GLU B . n B 2 33 PHE 33 33 33 PHE PHE B . n B 2 34 GLN 34 34 34 GLN GLN B . n B 2 35 LYS 35 35 35 LYS LYS B . n B 2 36 ILE 36 36 36 ILE ILE B . n B 2 37 ALA 37 37 37 ALA ALA B . n B 2 38 MET 38 38 38 MET MET B . n B 2 39 ALA 39 39 39 ALA ALA B . n B 2 40 THR 40 40 40 THR THR B . n B 2 41 ALA 41 41 41 ALA ALA B . n B 2 42 ILE 42 42 42 ILE ILE B . n B 2 43 GLY 43 43 43 GLY GLY B . n B 2 44 PHE 44 44 44 PHE PHE B . n B 2 45 ALA 45 45 45 ALA ALA B . n B 2 46 ILE 46 46 46 ILE ILE B . n B 2 47 MET 47 47 47 MET MET B . n B 2 48 GLY 48 48 48 GLY GLY B . n B 2 49 PHE 49 49 49 PHE PHE B . n B 2 50 ILE 50 50 50 ILE ILE B . n B 2 51 GLY 51 51 51 GLY GLY B . n B 2 52 PHE 52 52 52 PHE PHE B . n B 2 53 PHE 53 53 53 PHE PHE B . n B 2 54 VAL 54 54 54 VAL VAL B . n B 2 55 LYS 55 55 55 LYS LYS B . n B 2 56 LEU 56 56 56 LEU LEU B . n B 2 57 ILE 57 57 57 ILE ILE B . n B 2 58 HIS 58 58 58 HIS HIS B . n B 2 59 ILE 59 59 59 ILE ILE B . n B 2 60 PRO 60 60 60 PRO PRO B . n B 2 61 ILE 61 61 61 ILE ILE B . n B 2 62 ASN 62 62 62 ASN ASN B . n B 2 63 ASN 63 63 63 ASN ASN B . n B 2 64 ILE 64 64 64 ILE ILE B . n B 2 65 ILE 65 65 65 ILE ILE B . n B 2 66 VAL 66 66 66 VAL VAL B . n B 2 67 GLY 67 67 67 GLY GLY B . n B 2 68 GLY 68 68 68 GLY GLY B . n C 3 1 GLU 1 61 61 GLU GLU C . n C 3 2 ASP 2 62 62 ASP ASP C . n C 3 3 SER 3 63 63 SER SER C . n C 3 4 PRO 4 64 64 PRO PRO C . n C 3 5 GLY 5 65 65 GLY GLY C . n C 3 6 LEU 6 66 66 LEU LEU C . n C 3 7 LYS 7 67 67 LYS LYS C . n C 3 8 VAL 8 68 68 VAL VAL C . n C 3 9 GLY 9 69 69 GLY GLY C . n C 3 10 PRO 10 70 70 PRO PRO C . n C 3 11 VAL 11 71 71 VAL VAL C . n C 3 12 PRO 12 72 72 PRO PRO C . n C 3 13 VAL 13 73 73 VAL VAL C . n C 3 14 LEU 14 74 74 LEU LEU C . n C 3 15 VAL 15 75 75 VAL VAL C . n C 3 16 MET 16 76 76 MET MET C . n C 3 17 SER 17 77 77 SER SER C . n C 3 18 LEU 18 78 78 LEU LEU C . n C 3 19 LEU 19 79 79 LEU LEU C . n C 3 20 PHE 20 80 80 PHE PHE C . n C 3 21 ILE 21 81 81 ILE ILE C . n C 3 22 ALA 22 82 82 ALA ALA C . n C 3 23 SER 23 83 83 SER SER C . n C 3 24 VAL 24 84 84 VAL VAL C . n C 3 25 PHE 25 85 85 PHE PHE C . n C 3 26 MET 26 86 86 MET MET C . n C 3 27 LEU 27 87 87 LEU LEU C . n C 3 28 HIS 28 88 88 HIS HIS C . n C 3 29 ILE 29 89 89 ILE ILE C . n C 3 30 TRP 30 90 90 TRP TRP C . n C 3 31 GLY 31 91 91 GLY GLY C . n C 3 32 LYS 32 92 92 LYS LYS C . n C 3 33 TYR 33 93 93 TYR TYR C . n C 3 34 THR 34 94 94 THR THR C . n C 3 35 ARG 35 95 95 ARG ARG C . n C 3 36 SER 36 96 96 SER SER C . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-02-05 2 'Structure model' 1 1 2014-02-12 3 'Structure model' 1 2 2014-02-19 4 'Structure model' 1 3 2017-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category em_software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 4 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_em_software.image_processing_id' # _em_3d_reconstruction.entry_id 4CG7 _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.num_particles 162655 _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size 1.2375 _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.resolution 6.9 _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details 'SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-2510. (DEPOSITION ID: 12120).' _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name '30 MM HEPES/KOH 7.6, 10 MM MG(OAC)2, 180 MM KOAC/HAC PH 7.6, 0.3 % DIGITONIN, 1 MM DTT' _em_buffer.pH 7.6 _em_buffer.details '30 MM HEPES/KOH 7.6, 10 MM MG(OAC)2, 180 MM KOAC/HAC PH 7.6, 0.3 % DIGITONIN, 1 MM DTT' # _em_entity_assembly.id 1 _em_entity_assembly.name 'IDLE SEC61 BOUND TO AN EMPTY WHEAT GERM 80S-RIBOSOME' _em_entity_assembly.type RIBOSOME _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 4CG7 _em_image_scans.id 1 _em_image_scans.image_recording_id 1 _em_image_scans.number_digital_images 9805 _em_image_scans.citation_id ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.details ? # _em_imaging.entry_id 4CG7 _em_imaging.id 1 _em_imaging.specimen_id 1 _em_imaging.date 2011-07-17 _em_imaging.temperature ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.nominal_defocus_min 1300 _em_imaging.nominal_defocus_max 4000 _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_cs 2.7 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification 148721 _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 200 _em_imaging.details ? _em_imaging.specimen_holder_type . _em_imaging.specimen_holder_model . _em_imaging.citation_id ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details CARBON _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? # _em_vitrification.entry_id 4CG7 _em_vitrification.id 1 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.cryogen_name ETHANE _em_vitrification.specimen_id 1 _em_vitrification.details 'VITRIFICATION 1 -- CRYOGEN- ETHANE, HUMIDITY- 95, INSTRUMENT- FEI VITROBOT MARK IV, METHOD- BLOT FOR 3 SECONDS BEFORE PLUNGING,' _em_vitrification.citation_id ? _em_vitrification.humidity ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 4CG7 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' # _em_single_particle_entity.entry_id 4CG7 _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry C1 _em_single_particle_entity.image_processing_id 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NE A ARG 402 ? ? O A MET 409 ? ? 1.88 2 1 NH2 A ARG 402 ? ? O A MET 409 ? ? 1.93 3 1 CZ A ARG 402 ? ? O A MET 409 ? ? 2.05 4 1 CB A ARG 405 ? ? OG A SER 408 ? ? 2.08 5 1 O A VAL 410 ? ? OD1 A ASN 414 ? ? 2.16 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C A PHE 476 ? ? O A PHE 476 ? ? 0.999 1.229 -0.230 0.019 N 2 1 C B GLY 68 ? ? O B GLY 68 ? ? 1.000 1.232 -0.232 0.016 N 3 1 C C SER 96 ? ? O C SER 96 ? ? 1.000 1.229 -0.229 0.019 N 4 1 C C SER 96 ? ? OXT C SER 96 ? ? 1.000 1.229 -0.229 0.019 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N A GLN 27 ? ? CA A GLN 27 ? ? CB A GLN 27 ? ? 121.66 110.60 11.06 1.80 N 2 1 C A ILE 48 ? ? N A PRO 49 ? ? CA A PRO 49 ? ? 129.20 119.30 9.90 1.50 Y 3 1 C A ILE 48 ? ? N A PRO 49 ? ? CD A PRO 49 ? ? 101.35 128.40 -27.05 2.10 Y 4 1 CA A PRO 49 ? ? N A PRO 49 ? ? CD A PRO 49 ? ? 94.12 111.70 -17.58 1.40 N 5 1 N A SER 55 ? ? CA A SER 55 ? ? CB A SER 55 ? ? 119.86 110.50 9.36 1.50 N 6 1 N A SER 56 ? ? CA A SER 56 ? ? CB A SER 56 ? ? 120.37 110.50 9.87 1.50 N 7 1 N A SER 71 ? ? CA A SER 71 ? ? CB A SER 71 ? ? 120.53 110.50 10.03 1.50 N 8 1 N A SER 128 ? ? CA A SER 128 ? ? CB A SER 128 ? ? 120.50 110.50 10.00 1.50 N 9 1 CB A TYR 173 ? ? CG A TYR 173 ? ? CD2 A TYR 173 ? ? 116.74 121.00 -4.26 0.60 N 10 1 CB A TYR 173 ? ? CG A TYR 173 ? ? CD1 A TYR 173 ? ? 124.99 121.00 3.99 0.60 N 11 1 CB A TYR 257 ? ? CG A TYR 257 ? ? CD2 A TYR 257 ? ? 116.46 121.00 -4.54 0.60 N 12 1 CB A TYR 257 ? ? CG A TYR 257 ? ? CD1 A TYR 257 ? ? 124.97 121.00 3.97 0.60 N 13 1 N A TYR 272 ? ? CA A TYR 272 ? ? CB A TYR 272 ? ? 121.41 110.60 10.81 1.80 N 14 1 CB A TYR 276 ? ? CG A TYR 276 ? ? CD2 A TYR 276 ? ? 115.79 121.00 -5.21 0.60 N 15 1 CB A TYR 276 ? ? CG A TYR 276 ? ? CD1 A TYR 276 ? ? 126.26 121.00 5.26 0.60 N 16 1 CB A TYR 336 ? ? CG A TYR 336 ? ? CD2 A TYR 336 ? ? 117.26 121.00 -3.74 0.60 N 17 1 CB A TYR 364 ? ? CG A TYR 364 ? ? CD2 A TYR 364 ? ? 116.93 121.00 -4.07 0.60 N 18 1 CB A TYR 364 ? ? CG A TYR 364 ? ? CD1 A TYR 364 ? ? 124.97 121.00 3.97 0.60 N 19 1 CB A PHE 375 ? ? CG A PHE 375 ? ? CD1 A PHE 375 ? ? 125.00 120.80 4.20 0.70 N 20 1 N A ASN 414 ? ? CA A ASN 414 ? ? CB A ASN 414 ? ? 121.42 110.60 10.82 1.80 N 21 1 CA B GLY 68 ? ? C B GLY 68 ? ? O B GLY 68 ? ? 109.02 120.60 -11.58 1.80 N 22 1 CB C PHE 80 ? ? CG C PHE 80 ? ? CD1 C PHE 80 ? ? 125.21 120.80 4.41 0.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 27 ? ? 148.00 124.90 2 1 PRO A 49 ? ? 100.47 -19.64 3 1 PHE A 51 ? ? 94.25 -24.11 4 1 MET A 54 ? ? 156.17 -50.82 5 1 SER A 55 ? ? 143.15 161.38 6 1 SER A 56 ? ? 115.78 -147.44 7 1 ASP A 57 ? ? -143.81 -6.74 8 1 ALA A 59 ? ? 155.48 169.05 9 1 PHE A 62 ? ? 13.92 -158.75 10 1 ALA A 70 ? ? 90.30 99.00 11 1 SER A 71 ? ? 115.74 -144.64 12 1 ARG A 73 ? ? -148.15 -19.41 13 1 THR A 75 ? ? 58.06 -124.16 14 1 ILE A 81 ? ? -57.92 20.37 15 1 VAL A 102 ? ? 84.69 9.02 16 1 GLN A 127 ? ? -137.06 -36.14 17 1 GLU A 142 ? ? 88.19 9.31 18 1 ALA A 145 ? ? 94.77 153.24 19 1 ILE A 147 ? ? 7.08 -66.15 20 1 LEU A 149 ? ? 14.64 -59.79 21 1 LYS A 171 ? ? -155.73 26.04 22 1 TYR A 173 ? ? 156.41 129.38 23 1 LEU A 175 ? ? 148.99 -135.41 24 1 THR A 199 ? ? 166.03 -144.58 25 1 VAL A 201 ? ? -172.84 141.54 26 1 PHE A 209 ? ? 53.64 -136.10 27 1 ALA A 212 ? ? -107.82 -96.94 28 1 ILE A 213 ? ? -142.79 52.29 29 1 ILE A 214 ? ? -14.80 -136.26 30 1 THR A 222 ? ? -21.00 -93.53 31 1 THR A 224 ? ? 55.45 -131.27 32 1 LYS A 226 ? ? 77.11 -160.90 33 1 VAL A 227 ? ? 86.86 3.04 34 1 ARG A 231 ? ? 168.23 -170.24 35 1 TYR A 235 ? ? -156.82 -45.35 36 1 ARG A 236 ? ? -52.31 -74.17 37 1 GLN A 237 ? ? -11.37 -67.80 38 1 ASP A 264 ? ? -97.51 -113.06 39 1 LYS A 268 ? ? 88.44 9.53 40 1 ALA A 270 ? ? 94.26 15.65 41 1 ARG A 271 ? ? 87.35 -35.96 42 1 TYR A 272 ? ? 151.95 -83.42 43 1 ARG A 273 ? ? -20.82 131.51 44 1 LEU A 283 ? ? 48.97 -122.42 45 1 ASN A 315 ? ? -177.58 93.40 46 1 LEU A 316 ? ? -52.07 -137.72 47 1 LEU A 317 ? ? -29.42 139.92 48 1 TRP A 324 ? ? 92.41 -12.93 49 1 ALA A 335 ? ? -35.25 62.75 50 1 VAL A 338 ? ? -109.63 72.44 51 1 GLU A 349 ? ? 87.83 33.50 52 1 SER A 350 ? ? -154.72 -5.61 53 1 GLU A 356 ? ? -98.09 43.78 54 1 VAL A 359 ? ? -168.47 -40.61 55 1 VAL A 382 ? ? -153.79 12.74 56 1 GLN A 398 ? ? 58.13 103.77 57 1 VAL A 400 ? ? 88.23 6.30 58 1 HIS A 404 ? ? 60.46 -126.93 59 1 ARG A 405 ? ? 101.36 -3.47 60 1 GLU A 406 ? ? 80.80 -107.04 61 1 THR A 407 ? ? -59.38 -9.65 62 1 SER A 408 ? ? -66.64 -144.46 63 1 MET A 409 ? ? 52.85 -5.49 64 1 GLU A 412 ? ? -31.11 -85.04 65 1 SER A 466 ? ? 55.91 -12.09 66 1 GLU A 467 ? ? -76.30 31.61 67 1 VAL A 468 ? ? 18.24 98.19 68 1 SER A 470 ? ? 137.16 -2.56 69 1 MET A 471 ? ? -78.21 -130.36 70 1 ALA A 473 ? ? 167.52 21.15 71 1 LEU A 475 ? ? -147.71 19.78 72 1 ARG B 24 ? ? -38.65 -88.03 73 1 THR B 26 ? ? -129.97 -70.30 74 1 PRO B 28 ? ? -62.78 42.65 75 1 ASP B 29 ? ? 18.50 68.01 76 1 ARG B 30 ? ? 41.67 -61.93 77 1 VAL B 66 ? ? -161.37 -6.72 78 1 PRO C 72 ? ? 2.28 -42.30 79 1 VAL C 84 ? ? -39.44 -38.03 80 1 LYS C 92 ? ? 82.87 16.19 81 1 THR C 94 ? ? -32.37 143.45 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 GLN A 47 ? ? ILE A 48 ? ? -146.25 2 1 ILE A 48 ? ? PRO A 49 ? ? -134.08 3 1 ALA A 59 ? ? ASP A 60 ? ? -147.87 4 1 TRP A 64 ? ? MET A 65 ? ? -149.34 5 1 ALA A 70 ? ? SER A 71 ? ? 146.24 6 1 MET A 133 ? ? THR A 134 ? ? -145.71 7 1 GLY A 176 ? ? SER A 177 ? ? -144.92 8 1 PRO A 266 ? ? ILE A 267 ? ? -134.62 9 1 ARG A 273 ? ? GLY A 274 ? ? -123.93 10 1 ASP A 357 ? ? PRO A 358 ? ? -105.12 11 1 PRO A 358 ? ? VAL A 359 ? ? 142.76 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 73 ? ? 0.149 'SIDE CHAIN' 2 1 TYR A 285 ? ? 0.069 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ALA 2 ? A ALA 2 3 1 Y 1 A ILE 3 ? A ILE 3 4 1 Y 1 A LYS 4 ? A LYS 4 5 1 Y 1 A PHE 5 ? A PHE 5 6 1 Y 1 A LEU 6 ? A LEU 6 7 1 Y 1 A GLU 7 ? A GLU 7 8 1 Y 1 A VAL 8 ? A VAL 8 9 1 Y 1 A ILE 9 ? A ILE 9 10 1 Y 1 A LYS 10 ? A LYS 10 11 1 Y 1 A PRO 11 ? A PRO 11 12 1 Y 1 A PHE 12 ? A PHE 12 13 1 Y 1 A CYS 13 ? A CYS 13 14 1 Y 1 A VAL 14 ? A VAL 14 15 1 Y 1 A ILE 15 ? A ILE 15 16 1 Y 1 A LEU 16 ? A LEU 16 17 1 Y 1 A PRO 17 ? A PRO 17 18 1 Y 1 A GLU 18 ? A GLU 18 19 1 Y 1 A ILE 19 ? A ILE 19 20 1 Y 1 A GLN 20 ? A GLN 20 21 1 Y 1 A LYS 21 ? A LYS 21 22 1 Y 1 A PRO 22 ? A PRO 22 23 1 Y 1 A GLU 23 ? A GLU 23 24 1 Y 1 A ARG 24 ? A ARG 24 25 1 Y 1 B MET 1 ? B MET 1 26 1 Y 1 B ASP 2 ? B ASP 2 27 1 Y 1 B GLN 3 ? B GLN 3 28 1 Y 1 B VAL 4 ? B VAL 4 29 1 Y 1 B MET 5 ? B MET 5 30 1 Y 1 B GLN 6 ? B GLN 6 # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image 25 _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'TVIPS TEMCAM-F416 (4k x 4k)' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id _em_software.imaging_id _em_software.fitting_id 1 MAPPOS ? CLASSIFICATION ? 1 ? ? 2 Coot ? 'MODEL FITTING' ? ? ? ? 3 MDFF ? 'MODEL FITTING' ? ? ? ? 4 'UCSF Chimera' ? 'MODEL FITTING' ? ? ? ? 5 Signature ? 'PARTICLE SELECTION' ? 1 ? ? 6 SPIDER ? RECONSTRUCTION ? 1 ? ? # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES _em_specimen.details ? #