HEADER CELL CYCLE 21-NOV-13 4CGB TITLE CRYSTAL STRUCTURE OF THE TRIMERIZATION DOMAIN OF EML2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ECHINODERM MICROTUBULE-ASSOCIATED PROTEIN-LIKE 2; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: TRIMERIZATION DOMAIN, RESIDUES 11-60; COMPND 5 SYNONYM: EMAP-2, HUEMAP-2, ECHINODERM MICROTUBULE ASSOCIATED PROTEIN- COMPND 6 LIKE PROTEIN 2 ISOFORM 2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 ORGAN: BRAIN AND SPINAL CORD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30TEV KEYWDS CELL CYCLE, COILED-COIL EXPDTA X-RAY DIFFRACTION AUTHOR M.W.RICHARDS,R.BAYLISS REVDAT 5 20-DEC-23 4CGB 1 REMARK REVDAT 4 08-MAY-19 4CGB 1 REMARK REVDAT 3 29-APR-15 4CGB 1 JRNL REVDAT 2 18-MAR-15 4CGB 1 JRNL REVDAT 1 10-DEC-14 4CGB 0 JRNL AUTH M.W.RICHARDS,L.O'REGAN,D.ROTH,J.M.MONTGOMERY,A.STRAUBE, JRNL AUTH 2 A.M.FRY,R.BAYLISS JRNL TITL MICROTUBULE ASSOCIATION OF EML PROTEINS AND THE EML4-ALK JRNL TITL 2 VARIANT 3 ONCOPROTEIN REQUIRE AN N-TERMINAL TRIMERIZATION JRNL TITL 3 DOMAIN. JRNL REF BIOCHEM.J. V. 467 529 2015 JRNL REFN ISSN 0264-6021 JRNL PMID 25740311 JRNL DOI 10.1042/BJ20150039 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 14027 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 696 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.8596 - 3.6832 1.00 2806 131 0.2079 0.2315 REMARK 3 2 3.6832 - 2.9235 1.00 2676 147 0.1918 0.2486 REMARK 3 3 2.9235 - 2.5540 0.99 2639 130 0.2187 0.2751 REMARK 3 4 2.5540 - 2.3205 1.00 2617 144 0.2046 0.2559 REMARK 3 5 2.3205 - 2.1542 1.00 2593 144 0.2138 0.3018 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 43.89 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.14300 REMARK 3 B22 (A**2) : 10.04680 REMARK 3 B33 (A**2) : -3.90390 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1991 REMARK 3 ANGLE : 0.930 2680 REMARK 3 CHIRALITY : 0.045 329 REMARK 3 PLANARITY : 0.003 362 REMARK 3 DIHEDRAL : 17.187 777 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 4:57) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1788 21.6685 48.0306 REMARK 3 T TENSOR REMARK 3 T11: 0.1745 T22: 0.1466 REMARK 3 T33: 0.2342 T12: 0.0118 REMARK 3 T13: 0.0439 T23: 0.0434 REMARK 3 L TENSOR REMARK 3 L11: 4.1249 L22: 2.7935 REMARK 3 L33: 9.1057 L12: 1.0983 REMARK 3 L13: 3.7691 L23: 1.6389 REMARK 3 S TENSOR REMARK 3 S11: -0.0898 S12: -0.1218 S13: 0.1097 REMARK 3 S21: -0.0575 S22: 0.0321 S23: 0.1005 REMARK 3 S31: -0.1685 S32: -0.3533 S33: 0.1268 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 13:60) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3166 17.4358 47.1587 REMARK 3 T TENSOR REMARK 3 T11: 0.1239 T22: 0.1125 REMARK 3 T33: 0.2266 T12: 0.0101 REMARK 3 T13: 0.0352 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 3.9328 L22: 1.5038 REMARK 3 L33: 2.6759 L12: -0.2788 REMARK 3 L13: 1.6424 L23: 0.1857 REMARK 3 S TENSOR REMARK 3 S11: 0.1525 S12: 0.1127 S13: -0.0604 REMARK 3 S21: -0.0713 S22: 0.0298 S23: -0.0489 REMARK 3 S31: 0.3529 S32: -0.2631 S33: -0.2653 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C AND (RESSEQ 13:60) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4572 25.5088 41.7592 REMARK 3 T TENSOR REMARK 3 T11: 0.2794 T22: 0.2025 REMARK 3 T33: 0.3179 T12: -0.0311 REMARK 3 T13: 0.0386 T23: 0.0519 REMARK 3 L TENSOR REMARK 3 L11: 6.1042 L22: 1.4969 REMARK 3 L33: 6.4932 L12: -0.1503 REMARK 3 L13: 4.5165 L23: -0.9334 REMARK 3 S TENSOR REMARK 3 S11: 0.0338 S12: 0.3069 S13: 0.0767 REMARK 3 S21: 0.0658 S22: 0.1249 S23: 0.1543 REMARK 3 S31: -0.3848 S32: 0.3033 S33: -0.1294 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D AND (RESSEQ 13:57) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5496 15.5203 37.3313 REMARK 3 T TENSOR REMARK 3 T11: 0.2402 T22: 0.3014 REMARK 3 T33: 0.1978 T12: 0.0704 REMARK 3 T13: -0.0557 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 5.1138 L22: 5.9317 REMARK 3 L33: 3.5390 L12: 3.4841 REMARK 3 L13: -2.3207 L23: -3.0982 REMARK 3 S TENSOR REMARK 3 S11: -0.1014 S12: 0.7377 S13: 0.2314 REMARK 3 S21: -0.2209 S22: 0.3129 S23: 0.3449 REMARK 3 S31: 0.0848 S32: -0.3285 S33: -0.1943 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN E AND (RESSEQ 13:60) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7293 15.3563 41.5588 REMARK 3 T TENSOR REMARK 3 T11: 0.1631 T22: 0.2514 REMARK 3 T33: 0.2095 T12: 0.0454 REMARK 3 T13: 0.0254 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 2.3212 L22: 8.6370 REMARK 3 L33: 2.8784 L12: 3.2814 REMARK 3 L13: 0.2098 L23: -0.9064 REMARK 3 S TENSOR REMARK 3 S11: 0.0823 S12: 0.0967 S13: 0.0317 REMARK 3 S21: -0.1329 S22: -0.2110 S23: -0.2896 REMARK 3 S31: -0.1541 S32: 0.0810 S33: 0.1196 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN F AND (RESSEQ 13:60) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4287 17.4424 44.4217 REMARK 3 T TENSOR REMARK 3 T11: 0.1255 T22: 0.2625 REMARK 3 T33: 0.2245 T12: 0.0105 REMARK 3 T13: -0.0162 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 3.0250 L22: 10.0437 REMARK 3 L33: 2.7822 L12: 2.7956 REMARK 3 L13: -0.7238 L23: -2.8898 REMARK 3 S TENSOR REMARK 3 S11: -0.0091 S12: 0.2953 S13: 0.1821 REMARK 3 S21: 0.1091 S22: -0.0121 S23: -0.0045 REMARK 3 S31: -0.1478 S32: 0.0197 S33: -0.0992 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IN CHAIN A RESIDUES 14-57 ARE ORDERED. REMARK 3 IN CHAIN B RESIDUES 14-58 ARE ORDERED. IN CHAIN C RESIDUES 13-53 REMARK 3 ARE ORDERED. IN CHAIN D RESIDUES 13-57 ARE ORDERED. IN CHAIN E REMARK 3 RESIDUES 13-52 ARE ORDERED. IN CHAIN F RESIDUES 13-57 ARE REMARK 3 ORDERED. REMARK 4 REMARK 4 4CGB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1290058901. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14593 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4CGC REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE OBTAINED BY THE HANGING REMARK 280 DROP VAPOUR DIFFUSION METHOD USING 100 MM BIS-TRIS-PROPANE PH REMARK 280 6.5, 20% PEG 3350, 200 MM POTASSIUM THIOCYANATE IN THE REMARK 280 RESERVOIR., VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.93550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.84550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.56750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.84550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.93550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.56750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 MET A 13 REMARK 465 ARG A 58 REMARK 465 ALA A 59 REMARK 465 ARG A 60 REMARK 465 GLY B 10 REMARK 465 SER B 11 REMARK 465 GLY B 12 REMARK 465 MET B 13 REMARK 465 ALA B 59 REMARK 465 ARG B 60 REMARK 465 GLY C 10 REMARK 465 SER C 11 REMARK 465 GLY C 12 REMARK 465 GLY C 54 REMARK 465 ALA C 55 REMARK 465 ALA C 56 REMARK 465 LEU C 57 REMARK 465 ARG C 58 REMARK 465 ALA C 59 REMARK 465 ARG C 60 REMARK 465 GLY D 10 REMARK 465 SER D 11 REMARK 465 GLY D 12 REMARK 465 ARG D 58 REMARK 465 ALA D 59 REMARK 465 ARG D 60 REMARK 465 GLY E 10 REMARK 465 SER E 11 REMARK 465 GLY E 12 REMARK 465 MET E 13 REMARK 465 GLN E 53 REMARK 465 GLY E 54 REMARK 465 ALA E 55 REMARK 465 ALA E 56 REMARK 465 LEU E 57 REMARK 465 ARG E 58 REMARK 465 ALA E 59 REMARK 465 ARG E 60 REMARK 465 GLY F 10 REMARK 465 SER F 11 REMARK 465 GLY F 12 REMARK 465 ARG F 58 REMARK 465 ALA F 59 REMARK 465 ARG F 60 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 14 CG CD OE1 OE2 REMARK 470 GLU B 14 CG CD OE1 OE2 REMARK 470 ASP B 16 CG OD1 OD2 REMARK 470 GLN B 24 CG CD OE1 NE2 REMARK 470 MET C 13 CG SD CE REMARK 470 GLU C 14 CG CD OE1 OE2 REMARK 470 ARG C 48 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 51 CG CD OE1 OE2 REMARK 470 GLU C 52 CG CD OE1 OE2 REMARK 470 GLN C 53 CG CD OE1 NE2 REMARK 470 MET D 13 CG SD CE REMARK 470 GLU D 14 CG CD OE1 OE2 REMARK 470 GLN D 53 CG CD OE1 NE2 REMARK 470 MET F 13 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH F 2001 O HOH F 2002 2.02 REMARK 500 NH1 ARG D 48 O HOH B 2008 2.06 REMARK 500 N MET C 13 O HOH C 2001 2.17 REMARK 500 O GLU E 52 O HOH E 2016 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN E 24 O HOH F 2008 4556 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS F 37 CD - CE - NZ ANGL. DEV. = 14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA D 56 50.45 -92.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL F 1058 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CGC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TRIMERIZATION DOMAIN OF HUMAN EML4 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE N-TERMINAL GLYCINE RESIDUE IS NOT PART OF THE NATIVE REMARK 999 SEQUENCE AND DERIVES FROM THE TEV CLEAVAGE SITE. REMARK 999 SEQUENCE USED HERE IS THE ISOFORM-2 OF O95834 DBREF 4CGB A 11 60 UNP O95834 EMAL2_HUMAN 11 60 DBREF 4CGB B 11 60 UNP O95834 EMAL2_HUMAN 11 60 DBREF 4CGB C 11 60 UNP O95834 EMAL2_HUMAN 11 60 DBREF 4CGB D 11 60 UNP O95834 EMAL2_HUMAN 11 60 DBREF 4CGB E 11 60 UNP O95834 EMAL2_HUMAN 11 60 DBREF 4CGB F 11 60 UNP O95834 EMAL2_HUMAN 11 60 SEQADV 4CGB GLY A 10 UNP 095834 EXPRESSION TAG SEQADV 4CGB GLY B 10 UNP 095834 EXPRESSION TAG SEQADV 4CGB GLY C 10 UNP 095834 EXPRESSION TAG SEQADV 4CGB GLY D 10 UNP 095834 EXPRESSION TAG SEQADV 4CGB GLY E 10 UNP 095834 EXPRESSION TAG SEQADV 4CGB GLY F 10 UNP 095834 EXPRESSION TAG SEQRES 1 A 51 GLY SER GLY MET GLU VAL ASP ASP ARG VAL SER ALA LEU SEQRES 2 A 51 GLU GLN ARG LEU GLN LEU GLN GLU ASP GLU LEU ALA VAL SEQRES 3 A 51 LEU LYS ALA ALA LEU ALA ASP ALA LEU ARG ARG LEU ARG SEQRES 4 A 51 ALA CYS GLU GLU GLN GLY ALA ALA LEU ARG ALA ARG SEQRES 1 B 51 GLY SER GLY MET GLU VAL ASP ASP ARG VAL SER ALA LEU SEQRES 2 B 51 GLU GLN ARG LEU GLN LEU GLN GLU ASP GLU LEU ALA VAL SEQRES 3 B 51 LEU LYS ALA ALA LEU ALA ASP ALA LEU ARG ARG LEU ARG SEQRES 4 B 51 ALA CYS GLU GLU GLN GLY ALA ALA LEU ARG ALA ARG SEQRES 1 C 51 GLY SER GLY MET GLU VAL ASP ASP ARG VAL SER ALA LEU SEQRES 2 C 51 GLU GLN ARG LEU GLN LEU GLN GLU ASP GLU LEU ALA VAL SEQRES 3 C 51 LEU LYS ALA ALA LEU ALA ASP ALA LEU ARG ARG LEU ARG SEQRES 4 C 51 ALA CYS GLU GLU GLN GLY ALA ALA LEU ARG ALA ARG SEQRES 1 D 51 GLY SER GLY MET GLU VAL ASP ASP ARG VAL SER ALA LEU SEQRES 2 D 51 GLU GLN ARG LEU GLN LEU GLN GLU ASP GLU LEU ALA VAL SEQRES 3 D 51 LEU LYS ALA ALA LEU ALA ASP ALA LEU ARG ARG LEU ARG SEQRES 4 D 51 ALA CYS GLU GLU GLN GLY ALA ALA LEU ARG ALA ARG SEQRES 1 E 51 GLY SER GLY MET GLU VAL ASP ASP ARG VAL SER ALA LEU SEQRES 2 E 51 GLU GLN ARG LEU GLN LEU GLN GLU ASP GLU LEU ALA VAL SEQRES 3 E 51 LEU LYS ALA ALA LEU ALA ASP ALA LEU ARG ARG LEU ARG SEQRES 4 E 51 ALA CYS GLU GLU GLN GLY ALA ALA LEU ARG ALA ARG SEQRES 1 F 51 GLY SER GLY MET GLU VAL ASP ASP ARG VAL SER ALA LEU SEQRES 2 F 51 GLU GLN ARG LEU GLN LEU GLN GLU ASP GLU LEU ALA VAL SEQRES 3 F 51 LEU LYS ALA ALA LEU ALA ASP ALA LEU ARG ARG LEU ARG SEQRES 4 F 51 ALA CYS GLU GLU GLN GLY ALA ALA LEU ARG ALA ARG HET K A1001 1 HET K D1001 1 HET GOL F1058 6 HETNAM K POTASSIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 K 2(K 1+) FORMUL 9 GOL C3 H8 O3 FORMUL 10 HOH *87(H2 O) HELIX 1 1 GLU A 14 ALA A 56 1 43 HELIX 2 2 GLU B 14 ARG B 58 1 45 HELIX 3 3 MET C 13 GLU C 52 1 40 HELIX 4 4 GLU D 14 ALA D 55 1 42 HELIX 5 5 GLU E 14 GLU E 52 1 39 HELIX 6 6 MET F 13 ALA F 56 1 44 SITE 1 AC1 6 GLU D 52 GLU E 32 GLU F 30 LEU F 33 SITE 2 AC1 6 ALA F 34 LYS F 37 CRYST1 47.871 51.135 101.691 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020889 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019556 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009834 0.00000