HEADER TRANSFERASE 04-DEC-13 4CHY TITLE INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL CHALLENGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 50-212; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET KEYWDS TRANSFERASE, STRUCTURE BASED DRUG DESIGN EXPDTA X-RAY DIFFRACTION AUTHOR T.S.PEAT REVDAT 4 20-DEC-23 4CHY 1 JRNL REMARK REVDAT 3 25-JUN-14 4CHY 1 JRNL REVDAT 2 26-FEB-14 4CHY 1 JRNL REVDAT 1 18-DEC-13 4CHY 0 JRNL AUTH T.S.PEAT,O.DOLEZAL,J.NEWMAN,D.MOBLEY,J.J.DEADMAN JRNL TITL INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL JRNL TITL 2 CHALLENGE. JRNL REF J.COMPUT.AIDED MOL.DES. V. 28 347 2014 JRNL REFN ISSN 0920-654X JRNL PMID 24532034 JRNL DOI 10.1007/S10822-014-9721-7 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 38903 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2066 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2341 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.3530 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2310 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 138 REMARK 3 SOLVENT ATOMS : 131 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.941 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2599 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2479 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3552 ; 1.270 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5719 ; 0.744 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 322 ; 5.296 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;29.156 ;25.189 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 446 ;14.315 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;18.135 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 391 ; 0.055 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3030 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 608 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1216 ; 1.605 ; 3.401 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1211 ; 1.605 ; 3.395 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1516 ; 2.789 ; 5.700 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1383 ; 1.742 ; 3.867 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4CHY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1290059156. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95660 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41126 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 45.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ZSQ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE PROTEIN WAS CONCENTRATED TO 5.5 REMARK 280 MG/ML IN 40 MM TRIS PH 8.0, 250 MM NACL, 30 MM MGCL2, 5 MM DTT REMARK 280 AND SET UP IN A 1:1 RATIO WITH 1.6 TO 2.0 M AMMONIUM SULFATE, REMARK 280 100 MM SODIUM ACETATE BUFFER PH 5.0 TO 5.5., PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.56000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.12000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 30 REMARK 465 GLY A 31 REMARK 465 SER A 32 REMARK 465 SER A 33 REMARK 465 HIS A 34 REMARK 465 HIS A 35 REMARK 465 HIS A 36 REMARK 465 HIS A 37 REMARK 465 HIS A 38 REMARK 465 HIS A 39 REMARK 465 SER A 40 REMARK 465 SER A 41 REMARK 465 GLY A 42 REMARK 465 LEU A 43 REMARK 465 VAL A 44 REMARK 465 PRO A 45 REMARK 465 ARG A 46 REMARK 465 GLY A 47 REMARK 465 SER A 48 REMARK 465 HIS A 49 REMARK 465 MET A 50 REMARK 465 HIS A 51 REMARK 465 GLY A 52 REMARK 465 GLN A 53 REMARK 465 VAL A 54 REMARK 465 ASP A 55 REMARK 465 SER A 56 REMARK 465 GLY A 189 REMARK 465 GLY A 190 REMARK 465 ILE A 191 REMARK 465 GLY A 192 REMARK 465 GLY A 193 REMARK 465 THR A 210 REMARK 465 LYS A 211 REMARK 465 GLU A 212 REMARK 465 MET B 30 REMARK 465 GLY B 31 REMARK 465 SER B 32 REMARK 465 SER B 33 REMARK 465 HIS B 34 REMARK 465 HIS B 35 REMARK 465 HIS B 36 REMARK 465 HIS B 37 REMARK 465 HIS B 38 REMARK 465 HIS B 39 REMARK 465 SER B 40 REMARK 465 SER B 41 REMARK 465 GLY B 42 REMARK 465 LEU B 43 REMARK 465 VAL B 44 REMARK 465 PRO B 45 REMARK 465 ARG B 46 REMARK 465 GLY B 47 REMARK 465 SER B 48 REMARK 465 HIS B 49 REMARK 465 MET B 50 REMARK 465 HIS B 51 REMARK 465 GLY B 52 REMARK 465 GLN B 53 REMARK 465 VAL B 54 REMARK 465 ASP B 55 REMARK 465 SER B 56 REMARK 465 GLY B 189 REMARK 465 GLY B 190 REMARK 465 ILE B 191 REMARK 465 GLY B 192 REMARK 465 GLY B 193 REMARK 465 THR B 210 REMARK 465 LYS B 211 REMARK 465 GLU B 212 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 1213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 1214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 1213 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 1215 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1216 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C5Q B 1214 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C5Q B 1215 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C5Q A 1217 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C5Q A 1218 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CHN RELATED DB: PDB REMARK 900 INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL REMARK 900 CHALLENGE REMARK 900 RELATED ID: 4CHO RELATED DB: PDB REMARK 900 INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL REMARK 900 CHALLENGE REMARK 900 RELATED ID: 4CHP RELATED DB: PDB REMARK 900 INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL REMARK 900 CHALLENGE REMARK 900 RELATED ID: 4CHQ RELATED DB: PDB REMARK 900 INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL REMARK 900 CHALLENGE REMARK 900 RELATED ID: 4CHZ RELATED DB: PDB REMARK 900 INTERROGATING HIV INTEGRASE FOR COMPOUNDS THAT BIND- A SAMPL REMARK 900 CHALLENGE DBREF 4CHY A 50 212 UNP Q76353 Q76353_9HIV1 50 212 DBREF 4CHY B 50 212 UNP Q76353 Q76353_9HIV1 50 212 SEQADV 4CHY MET A 30 UNP Q76353 EXPRESSION TAG SEQADV 4CHY GLY A 31 UNP Q76353 EXPRESSION TAG SEQADV 4CHY SER A 32 UNP Q76353 EXPRESSION TAG SEQADV 4CHY SER A 33 UNP Q76353 EXPRESSION TAG SEQADV 4CHY HIS A 34 UNP Q76353 EXPRESSION TAG SEQADV 4CHY HIS A 35 UNP Q76353 EXPRESSION TAG SEQADV 4CHY HIS A 36 UNP Q76353 EXPRESSION TAG SEQADV 4CHY HIS A 37 UNP Q76353 EXPRESSION TAG SEQADV 4CHY HIS A 38 UNP Q76353 EXPRESSION TAG SEQADV 4CHY HIS A 39 UNP Q76353 EXPRESSION TAG SEQADV 4CHY SER A 40 UNP Q76353 EXPRESSION TAG SEQADV 4CHY SER A 41 UNP Q76353 EXPRESSION TAG SEQADV 4CHY GLY A 42 UNP Q76353 EXPRESSION TAG SEQADV 4CHY LEU A 43 UNP Q76353 EXPRESSION TAG SEQADV 4CHY VAL A 44 UNP Q76353 EXPRESSION TAG SEQADV 4CHY PRO A 45 UNP Q76353 EXPRESSION TAG SEQADV 4CHY ARG A 46 UNP Q76353 EXPRESSION TAG SEQADV 4CHY GLY A 47 UNP Q76353 EXPRESSION TAG SEQADV 4CHY SER A 48 UNP Q76353 EXPRESSION TAG SEQADV 4CHY HIS A 49 UNP Q76353 EXPRESSION TAG SEQADV 4CHY SER A 56 UNP Q76353 CYS 56 ENGINEERED MUTATION SEQADV 4CHY ASP A 139 UNP Q76353 PHE 139 ENGINEERED MUTATION SEQADV 4CHY HIS A 185 UNP Q76353 PHE 185 ENGINEERED MUTATION SEQADV 4CHY MET B 30 UNP Q76353 EXPRESSION TAG SEQADV 4CHY GLY B 31 UNP Q76353 EXPRESSION TAG SEQADV 4CHY SER B 32 UNP Q76353 EXPRESSION TAG SEQADV 4CHY SER B 33 UNP Q76353 EXPRESSION TAG SEQADV 4CHY HIS B 34 UNP Q76353 EXPRESSION TAG SEQADV 4CHY HIS B 35 UNP Q76353 EXPRESSION TAG SEQADV 4CHY HIS B 36 UNP Q76353 EXPRESSION TAG SEQADV 4CHY HIS B 37 UNP Q76353 EXPRESSION TAG SEQADV 4CHY HIS B 38 UNP Q76353 EXPRESSION TAG SEQADV 4CHY HIS B 39 UNP Q76353 EXPRESSION TAG SEQADV 4CHY SER B 40 UNP Q76353 EXPRESSION TAG SEQADV 4CHY SER B 41 UNP Q76353 EXPRESSION TAG SEQADV 4CHY GLY B 42 UNP Q76353 EXPRESSION TAG SEQADV 4CHY LEU B 43 UNP Q76353 EXPRESSION TAG SEQADV 4CHY VAL B 44 UNP Q76353 EXPRESSION TAG SEQADV 4CHY PRO B 45 UNP Q76353 EXPRESSION TAG SEQADV 4CHY ARG B 46 UNP Q76353 EXPRESSION TAG SEQADV 4CHY GLY B 47 UNP Q76353 EXPRESSION TAG SEQADV 4CHY SER B 48 UNP Q76353 EXPRESSION TAG SEQADV 4CHY HIS B 49 UNP Q76353 EXPRESSION TAG SEQADV 4CHY SER B 56 UNP Q76353 CYS 56 ENGINEERED MUTATION SEQADV 4CHY ASP B 139 UNP Q76353 PHE 139 ENGINEERED MUTATION SEQADV 4CHY HIS B 185 UNP Q76353 PHE 185 ENGINEERED MUTATION SEQRES 1 A 183 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 183 LEU VAL PRO ARG GLY SER HIS MET HIS GLY GLN VAL ASP SEQRES 3 A 183 SER SER PRO GLY ILE TRP GLN LEU ASP CYS THR HIS LEU SEQRES 4 A 183 GLU GLY LYS VAL ILE LEU VAL ALA VAL HIS VAL ALA SER SEQRES 5 A 183 GLY TYR ILE GLU ALA GLU VAL ILE PRO ALA GLU THR GLY SEQRES 6 A 183 GLN GLU THR ALA TYR PHE LEU LEU LYS LEU ALA GLY ARG SEQRES 7 A 183 TRP PRO VAL LYS THR VAL HIS THR ASP ASN GLY SER ASN SEQRES 8 A 183 PHE THR SER THR THR VAL LYS ALA ALA CYS TRP TRP ALA SEQRES 9 A 183 GLY ILE LYS GLN GLU ASP GLY ILE PRO TYR ASN PRO GLN SEQRES 10 A 183 SER GLN GLY VAL ILE GLU SER MET ASN LYS GLU LEU LYS SEQRES 11 A 183 LYS ILE ILE GLY GLN VAL ARG ASP GLN ALA GLU HIS LEU SEQRES 12 A 183 LYS THR ALA VAL GLN MET ALA VAL PHE ILE HIS ASN HIS SEQRES 13 A 183 LYS ARG LYS GLY GLY ILE GLY GLY TYR SER ALA GLY GLU SEQRES 14 A 183 ARG ILE VAL ASP ILE ILE ALA THR ASP ILE GLN THR LYS SEQRES 15 A 183 GLU SEQRES 1 B 183 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 183 LEU VAL PRO ARG GLY SER HIS MET HIS GLY GLN VAL ASP SEQRES 3 B 183 SER SER PRO GLY ILE TRP GLN LEU ASP CYS THR HIS LEU SEQRES 4 B 183 GLU GLY LYS VAL ILE LEU VAL ALA VAL HIS VAL ALA SER SEQRES 5 B 183 GLY TYR ILE GLU ALA GLU VAL ILE PRO ALA GLU THR GLY SEQRES 6 B 183 GLN GLU THR ALA TYR PHE LEU LEU LYS LEU ALA GLY ARG SEQRES 7 B 183 TRP PRO VAL LYS THR VAL HIS THR ASP ASN GLY SER ASN SEQRES 8 B 183 PHE THR SER THR THR VAL LYS ALA ALA CYS TRP TRP ALA SEQRES 9 B 183 GLY ILE LYS GLN GLU ASP GLY ILE PRO TYR ASN PRO GLN SEQRES 10 B 183 SER GLN GLY VAL ILE GLU SER MET ASN LYS GLU LEU LYS SEQRES 11 B 183 LYS ILE ILE GLY GLN VAL ARG ASP GLN ALA GLU HIS LEU SEQRES 12 B 183 LYS THR ALA VAL GLN MET ALA VAL PHE ILE HIS ASN HIS SEQRES 13 B 183 LYS ARG LYS GLY GLY ILE GLY GLY TYR SER ALA GLY GLU SEQRES 14 B 183 ARG ILE VAL ASP ILE ILE ALA THR ASP ILE GLN THR LYS SEQRES 15 B 183 GLU HET SO4 A1210 5 HET SO4 A1211 5 HET SO4 A1212 5 HET ACY A1213 4 HET ACY A1214 4 HET ACY A1215 4 HET EDO A1216 4 HET C5Q A1217 22 HET C5Q A1218 22 HET SO4 B1210 5 HET SO4 B1211 5 HET SO4 B1212 5 HET ACY B1213 4 HET C5Q B1214 22 HET C5Q B1215 22 HETNAM SO4 SULFATE ION HETNAM ACY ACETIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM C5Q 5-(1H-INDOL-3-YLMETHYL)-1,3-BENZODIOXOLE-4-CARBOXYLIC HETNAM 2 C5Q ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SO4 6(O4 S 2-) FORMUL 6 ACY 4(C2 H4 O2) FORMUL 9 EDO C2 H6 O2 FORMUL 10 C5Q 4(C17 H13 N O4) FORMUL 18 HOH *131(H2 O) HELIX 1 1 THR A 93 TRP A 108 1 16 HELIX 2 2 ASN A 117 SER A 123 1 7 HELIX 3 3 SER A 123 GLY A 134 1 12 HELIX 4 4 PRO A 145 ARG A 166 1 22 HELIX 5 5 ASP A 167 ALA A 169 5 3 HELIX 6 6 HIS A 171 LYS A 186 1 16 HELIX 7 7 SER A 195 GLN A 209 1 15 HELIX 8 8 THR B 93 TRP B 108 1 16 HELIX 9 9 ASN B 117 SER B 123 1 7 HELIX 10 10 SER B 123 GLY B 134 1 12 HELIX 11 11 PRO B 145 ARG B 166 1 22 HELIX 12 12 ASP B 167 ALA B 169 5 3 HELIX 13 13 HIS B 171 LYS B 186 1 16 HELIX 14 14 SER B 195 GLN B 209 1 15 SHEET 1 AA 5 ILE A 84 ILE A 89 0 SHEET 2 AA 5 LYS A 71 HIS A 78 -1 O VAL A 72 N ILE A 89 SHEET 3 AA 5 ILE A 60 LEU A 68 -1 O GLN A 62 N VAL A 77 SHEET 4 AA 5 THR A 112 HIS A 114 1 O THR A 112 N TRP A 61 SHEET 5 AA 5 LYS A 136 GLU A 138 1 O LYS A 136 N VAL A 113 SHEET 1 BA 5 ILE B 84 ILE B 89 0 SHEET 2 BA 5 LYS B 71 HIS B 78 -1 O VAL B 72 N ILE B 89 SHEET 3 BA 5 ILE B 60 LEU B 68 -1 O GLN B 62 N VAL B 77 SHEET 4 BA 5 THR B 112 HIS B 114 1 O THR B 112 N TRP B 61 SHEET 5 BA 5 LYS B 136 GLU B 138 1 O LYS B 136 N VAL B 113 SITE 1 AC1 6 THR B 66 HIS B 67 LYS B 111 LYS B 136 SITE 2 AC1 6 LYS B 159 HOH B2039 SITE 1 AC2 6 THR A 66 HIS A 67 LYS A 111 LYS A 159 SITE 2 AC2 6 HOH A2007 HOH A2052 SITE 1 AC3 4 LYS B 71 ARG B 166 HIS B 171 LEU B 172 SITE 1 AC4 7 GLY B 94 SER B 123 THR B 124 THR B 125 SITE 2 AC4 7 HOH B2019 HOH B2021 HOH B2033 SITE 1 AC5 7 GLY A 94 SER A 123 THR A 124 THR A 125 SITE 2 AC5 7 HOH A2026 HOH A2027 HOH A2046 SITE 1 AC6 5 LYS A 71 ARG A 166 HIS A 171 LEU A 172 SITE 2 AC6 5 HOH A2060 SITE 1 AC7 6 TYR A 99 LYS A 103 ACY A1214 HOH A2031 SITE 2 AC7 6 HOH A2070 HOH B2045 SITE 1 AC8 6 ACY A1213 HOH A2014 HOH A2016 HOH A2061 SITE 2 AC8 6 TYR B 99 LYS B 103 SITE 1 AC9 5 LYS A 173 GLN B 95 GLU B 96 TYR B 99 SITE 2 AC9 5 C5Q B1214 SITE 1 BC1 4 GLN A 95 GLU A 96 C5Q A1218 LYS B 173 SITE 1 BC2 5 GLU A 85 PHE A 100 LYS A 103 LEU A 104 SITE 2 BC2 5 ARG B 107 SITE 1 BC3 12 GLN A 168 MET A 178 GLN B 95 TYR B 99 SITE 2 BC3 12 LEU B 102 THR B 125 ALA B 128 ALA B 129 SITE 3 BC3 12 TRP B 131 ACY B1213 HOH B2055 HOH B2056 SITE 1 BC4 12 GLY A 106 ARG A 107 TRP A 108 PRO A 109 SITE 2 BC4 12 ILE A 204 ASP A 207 HOH A2004 HIS B 185 SITE 3 BC4 12 SER B 195 GLY B 197 HOH B2050 HOH B2057 SITE 1 BC5 10 HIS A 185 ARG A 187 SER A 195 GLY A 197 SITE 2 BC5 10 GLU A 198 HOH A2065 HOH A2067 ARG B 107 SITE 3 BC5 10 TRP B 108 PRO B 109 SITE 1 BC6 12 GLN A 95 TYR A 99 THR A 125 ALA A 128 SITE 2 BC6 12 ALA A 129 TRP A 131 ILE A 141 ACY A1215 SITE 3 BC6 12 HOH A2073 HOH A2074 GLN B 168 MET B 178 CRYST1 71.235 71.235 67.680 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014038 0.008105 0.000000 0.00000 SCALE2 0.000000 0.016210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014775 0.00000 CONECT 2398 2399 2400 2401 2402 CONECT 2399 2398 CONECT 2400 2398 CONECT 2401 2398 CONECT 2402 2398 CONECT 2403 2404 2405 2406 2407 CONECT 2404 2403 CONECT 2405 2403 CONECT 2406 2403 CONECT 2407 2403 CONECT 2408 2409 2410 2411 2412 CONECT 2409 2408 CONECT 2410 2408 CONECT 2411 2408 CONECT 2412 2408 CONECT 2413 2414 2415 2416 CONECT 2414 2413 CONECT 2415 2413 CONECT 2416 2413 CONECT 2417 2418 2419 2420 CONECT 2418 2417 CONECT 2419 2417 CONECT 2420 2417 CONECT 2421 2422 2423 2424 CONECT 2422 2421 CONECT 2423 2421 CONECT 2424 2421 CONECT 2425 2426 2427 CONECT 2426 2425 CONECT 2427 2425 2428 CONECT 2428 2427 CONECT 2429 2430 2431 CONECT 2430 2429 2433 CONECT 2431 2429 2435 CONECT 2432 2434 2436 CONECT 2433 2430 2438 CONECT 2434 2432 2439 CONECT 2435 2431 2438 2442 CONECT 2436 2432 2437 2443 CONECT 2437 2436 2440 2444 CONECT 2438 2433 2435 2446 CONECT 2439 2434 2440 2449 CONECT 2440 2437 2439 2450 CONECT 2441 2442 2446 CONECT 2442 2435 2441 2443 CONECT 2443 2436 2442 CONECT 2444 2437 2447 2448 CONECT 2445 2449 2450 CONECT 2446 2438 2441 CONECT 2447 2444 CONECT 2448 2444 CONECT 2449 2439 2445 CONECT 2450 2440 2445 CONECT 2451 2452 2453 CONECT 2452 2451 2455 CONECT 2453 2451 2457 CONECT 2454 2456 2458 CONECT 2455 2452 2460 CONECT 2456 2454 2461 CONECT 2457 2453 2460 2464 CONECT 2458 2454 2459 2465 CONECT 2459 2458 2462 2466 CONECT 2460 2455 2457 2468 CONECT 2461 2456 2462 2471 CONECT 2462 2459 2461 2472 CONECT 2463 2464 2468 CONECT 2464 2457 2463 2465 CONECT 2465 2458 2464 CONECT 2466 2459 2469 2470 CONECT 2467 2471 2472 CONECT 2468 2460 2463 CONECT 2469 2466 CONECT 2470 2466 CONECT 2471 2461 2467 CONECT 2472 2462 2467 CONECT 2473 2474 2475 2476 2477 CONECT 2474 2473 CONECT 2475 2473 CONECT 2476 2473 CONECT 2477 2473 CONECT 2478 2479 2480 2481 2482 CONECT 2479 2478 CONECT 2480 2478 CONECT 2481 2478 CONECT 2482 2478 CONECT 2483 2484 2485 2486 2487 CONECT 2484 2483 CONECT 2485 2483 CONECT 2486 2483 CONECT 2487 2483 CONECT 2488 2489 2490 2491 CONECT 2489 2488 CONECT 2490 2488 CONECT 2491 2488 CONECT 2492 2493 2494 CONECT 2493 2492 2496 CONECT 2494 2492 2498 CONECT 2495 2497 2499 CONECT 2496 2493 2501 CONECT 2497 2495 2502 CONECT 2498 2494 2501 2505 CONECT 2499 2495 2500 2506 CONECT 2500 2499 2503 2507 CONECT 2501 2496 2498 2509 CONECT 2502 2497 2503 2512 CONECT 2503 2500 2502 2513 CONECT 2504 2505 2509 CONECT 2505 2498 2504 2506 CONECT 2506 2499 2505 CONECT 2507 2500 2510 2511 CONECT 2508 2512 2513 CONECT 2509 2501 2504 CONECT 2510 2507 CONECT 2511 2507 CONECT 2512 2502 2508 CONECT 2513 2503 2508 CONECT 2514 2515 2516 CONECT 2515 2514 2518 CONECT 2516 2514 2520 CONECT 2517 2519 2521 CONECT 2518 2515 2523 CONECT 2519 2517 2524 CONECT 2520 2516 2523 2527 CONECT 2521 2517 2522 2528 CONECT 2522 2521 2525 2529 CONECT 2523 2518 2520 2531 CONECT 2524 2519 2525 2534 CONECT 2525 2522 2524 2535 CONECT 2526 2527 2531 CONECT 2527 2520 2526 2528 CONECT 2528 2521 2527 CONECT 2529 2522 2532 2533 CONECT 2530 2534 2535 CONECT 2531 2523 2526 CONECT 2532 2529 CONECT 2533 2529 CONECT 2534 2524 2530 CONECT 2535 2525 2530 MASTER 392 0 15 14 10 0 32 6 2579 2 138 30 END