HEADER DNA BINDING PROTEIN/PROTEIN BINDING 05-DEC-13 4CI2 TITLE STRUCTURE OF THE DDB1-CRBN E3 UBIQUITIN LIGASE BOUND TO LENALIDOMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA DAMAGE-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DDB P127 SUBUNIT, DNA DAMAGE-BINDING PROTEIN A, DDBA, COMPND 5 DAMAGE-SPECIFIC DNA-BINDING PROTEIN 1, HBV X-ASSOCIATED PROTEIN 1, COMPND 6 XAP-1, UV-DAMAGED DNA-BINDING FACTOR, UV-DAMAGED DNA-BINDING PROTEIN COMPND 7 1, UV-DDB 1, XPE-BINDING FACTOR, XPE-BF, XERODERMA PIGMENTOSUM GROUP COMPND 8 E-COMPLEMENTING PROTEIN, XPCE; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: PROTEIN CEREBLON; COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC DUAL; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 13 ORGANISM_COMMON: CHICKEN; SOURCE 14 ORGANISM_TAXID: 9031; SOURCE 15 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 16 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PFASTBAC DUAL KEYWDS DNA BINDING PROTEIN-PROTEIN BINDING COMPLEX, UBIQUITIN, CONT EXPDTA X-RAY DIFFRACTION AUTHOR E.S.FISCHER,K.BOEHM,N.H.THOMA REVDAT 6 01-MAY-24 4CI2 1 REMARK LINK REVDAT 5 03-APR-19 4CI2 1 SOURCE REVDAT 4 13-AUG-14 4CI2 1 JRNL REVDAT 3 30-JUL-14 4CI2 1 JRNL REVDAT 2 23-JUL-14 4CI2 1 TITLE REVDAT 1 16-JUL-14 4CI2 0 JRNL AUTH E.S.FISCHER,K.BOHM,J.R.LYDEARD,H.YANG,M.B.STADLER, JRNL AUTH 2 S.CAVADINI,J.NAGEL,F.SERLUCA,V.ACKER,G.M.LINGARAJU, JRNL AUTH 3 R.B.TICHKULE,M.SCHEBESTA,W.C.FORRESTER,M.SCHIRLE, JRNL AUTH 4 U.HASSIEPEN,J.OTTL,M.HILD,R.E.J.BECKWITH,J.W.HARPER, JRNL AUTH 5 J.L.JENKINS,N.H.THOMA JRNL TITL STRUCTURE OF THE DDB1-CRBN E3 UBIQUITIN LIGASE IN COMPLEX JRNL TITL 2 WITH THALIDOMIDE. JRNL REF NATURE V. 512 49 2014 JRNL REFN ISSN 0028-0836 JRNL PMID 25043012 JRNL DOI 10.1038/NATURE13527 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 50542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2528 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.03 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3718 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2557 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3532 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE : 0.2507 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 186 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 11411 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 97.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 95.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.19980 REMARK 3 B22 (A**2) : 3.19980 REMARK 3 B33 (A**2) : -6.39970 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.497 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.749 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.317 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.878 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.327 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 11661 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 15827 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 4023 ; 4.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 290 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1680 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 11661 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1555 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 12767 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.18 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.69 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.70 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 24.0830 197.8031 18.7352 REMARK 3 T TENSOR REMARK 3 T11: 0.0271 T22: -0.2107 REMARK 3 T33: -0.2576 T12: 0.0116 REMARK 3 T13: -0.1569 T23: -0.1213 REMARK 3 L TENSOR REMARK 3 L11: 2.1135 L22: 0.3683 REMARK 3 L33: 0.7308 L12: -0.4846 REMARK 3 L13: -0.1129 L23: 0.0329 REMARK 3 S TENSOR REMARK 3 S11: -0.1136 S12: -0.1163 S13: 0.0317 REMARK 3 S21: 0.2365 S22: 0.1332 S23: 0.1454 REMARK 3 S31: -0.2055 S32: -0.0932 S33: -0.0196 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 69.3482 167.9074 13.4468 REMARK 3 T TENSOR REMARK 3 T11: -0.0624 T22: 0.0131 REMARK 3 T33: -0.1482 T12: 0.0779 REMARK 3 T13: -0.0902 T23: -0.1025 REMARK 3 L TENSOR REMARK 3 L11: 1.9121 L22: 2.1189 REMARK 3 L33: 0.2075 L12: -1.3623 REMARK 3 L13: -0.2501 L23: -0.1280 REMARK 3 S TENSOR REMARK 3 S11: 0.0865 S12: 0.1911 S13: 0.1860 REMARK 3 S21: -0.2043 S22: -0.3163 S23: 0.1217 REMARK 3 S31: -0.2079 S32: -0.0767 S33: 0.2298 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CI2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1290059150. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50544 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.040 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 1.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: DDB1 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 100 MM REMARK 280 NA-CACODYLATE PH 6.2, 80 MM NAH2PO4, 120 MM K2HPO4, 950 MM TRI- REMARK 280 NA CITRATE., PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.22667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.61333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.61333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 93.22667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 ARG A -10 REMARK 465 ARG A -9 REMARK 465 LEU A -8 REMARK 465 VAL A -7 REMARK 465 PRO A -6 REMARK 465 ARG A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 ARG A 0 REMARK 465 MET A 1 REMARK 465 ASP A 146 REMARK 465 ARG A 147 REMARK 465 ASP A 148 REMARK 465 ASN A 149 REMARK 465 GLU A 286 REMARK 465 LYS A 287 REMARK 465 GLU A 288 REMARK 465 GLU A 289 REMARK 465 GLN A 290 REMARK 465 MET A 291 REMARK 465 ASP A 292 REMARK 465 GLY A 293 REMARK 465 THR A 294 REMARK 465 VAL A 295 REMARK 465 THR A 296 REMARK 465 LEU A 297 REMARK 465 LYS A 298 REMARK 465 ASP A 299 REMARK 465 SER A 772 REMARK 465 SER A 773 REMARK 465 SER A 774 REMARK 465 THR A 775 REMARK 465 ALA A 776 REMARK 465 PRO A 777 REMARK 465 HIS A 778 REMARK 465 GLU A 779 REMARK 465 THR A 780 REMARK 465 SER A 781 REMARK 465 PHE A 782 REMARK 465 GLY A 783 REMARK 465 ASP A 980 REMARK 465 SER A 981 REMARK 465 ALA A 982 REMARK 465 ALA A 983 REMARK 465 GLN A 1015 REMARK 465 ASN A 1016 REMARK 465 LEU A 1017 REMARK 465 GLY A 1018 REMARK 465 GLU A 1019 REMARK 465 THR A 1020 REMARK 465 SER A 1021 REMARK 465 TYR A 1114 REMARK 465 ASP A 1115 REMARK 465 ASP A 1116 REMARK 465 GLY A 1117 REMARK 465 SER A 1118 REMARK 465 GLY A 1119 REMARK 465 MET A 1120 REMARK 465 MET B -23 REMARK 465 ASP B -22 REMARK 465 TRP B -21 REMARK 465 SER B -20 REMARK 465 HIS B -19 REMARK 465 PRO B -18 REMARK 465 GLN B -17 REMARK 465 PHE B -16 REMARK 465 GLU B -15 REMARK 465 LYS B -14 REMARK 465 SER B -13 REMARK 465 ALA B -12 REMARK 465 VAL B -11 REMARK 465 ASP B -10 REMARK 465 GLU B -9 REMARK 465 ASN B -8 REMARK 465 LEU B -7 REMARK 465 TYR B -6 REMARK 465 PHE B -5 REMARK 465 GLN B -4 REMARK 465 GLY B -3 REMARK 465 GLY B -2 REMARK 465 GLY B -1 REMARK 465 ARG B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 GLU B 4 REMARK 465 GLU B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 ASP B 8 REMARK 465 GLY B 9 REMARK 465 ARG B 10 REMARK 465 ARG B 11 REMARK 465 ASN B 12 REMARK 465 MET B 13 REMARK 465 GLY B 14 REMARK 465 ASN B 15 REMARK 465 PRO B 16 REMARK 465 PRO B 17 REMARK 465 PRO B 18 REMARK 465 PRO B 19 REMARK 465 ALA B 20 REMARK 465 PRO B 21 REMARK 465 ALA B 22 REMARK 465 GLU B 23 REMARK 465 SER B 24 REMARK 465 GLU B 25 REMARK 465 GLU B 26 REMARK 465 GLU B 27 REMARK 465 ASP B 28 REMARK 465 ASP B 29 REMARK 465 ASN B 30 REMARK 465 GLU B 31 REMARK 465 MET B 32 REMARK 465 GLU B 33 REMARK 465 VAL B 34 REMARK 465 GLU B 35 REMARK 465 ASP B 36 REMARK 465 GLN B 37 REMARK 465 ASP B 38 REMARK 465 GLY B 39 REMARK 465 LYS B 40 REMARK 465 GLU B 41 REMARK 465 ALA B 42 REMARK 465 GLU B 43 REMARK 465 LYS B 44 REMARK 465 PRO B 45 REMARK 465 ASN B 46 REMARK 465 PHE B 209 REMARK 465 PRO B 210 REMARK 465 SER B 211 REMARK 465 SER B 212 REMARK 465 LYS B 213 REMARK 465 PRO B 214 REMARK 465 LYS B 215 REMARK 465 VAL B 216 REMARK 465 TRP B 217 REMARK 465 GLN B 218 REMARK 465 ASP B 219 REMARK 465 ILE B 428 REMARK 465 PRO B 429 REMARK 465 GLU B 430 REMARK 465 ALA B 431 REMARK 465 GLU B 432 REMARK 465 ASP B 433 REMARK 465 GLU B 434 REMARK 465 LEU B 435 REMARK 465 GLY B 436 REMARK 465 HIS B 437 REMARK 465 ASP B 438 REMARK 465 ARG B 439 REMARK 465 SER B 440 REMARK 465 PRO B 441 REMARK 465 LEU B 442 REMARK 465 LEU B 443 REMARK 465 CYS B 444 REMARK 465 LEU B 445 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 ARG A 114 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 127 CG CD OE1 OE2 REMARK 470 ARG A 129 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 145 CG CD1 CD2 REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 GLN A 174 CG CD OE1 NE2 REMARK 470 VAL A 195 CG1 CG2 REMARK 470 ARG A 198 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 199 CG CD OE1 OE2 REMARK 470 LYS A 200 CG CD CE NZ REMARK 470 LYS A 208 CG CD CE NZ REMARK 470 GLU A 224 CG CD OE1 OE2 REMARK 470 ASP A 243 CG OD1 OD2 REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 ASP A 318 CG OD1 OD2 REMARK 470 GLU A 420 CG CD OE1 OE2 REMARK 470 ARG A 589 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 769 CG CD CE NZ REMARK 470 GLU A 800 CG CD OE1 OE2 REMARK 470 ASP A 855 CG OD1 OD2 REMARK 470 LYS A 857 CG CD CE NZ REMARK 470 GLN A 859 CG CD OE1 NE2 REMARK 470 GLU A 892 CG CD OE1 OE2 REMARK 470 MET A 938 CG SD CE REMARK 470 GLU A 988 CG CD OE1 OE2 REMARK 470 MET B 47 CG SD CE REMARK 470 MET B 89 CG SD CE REMARK 470 ARG B 172 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 182 CG CD CE NZ REMARK 470 ARG B 220 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 271 CG CD CE NZ REMARK 470 ARG B 427 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 27 -65.00 -96.74 REMARK 500 LYS A 35 55.86 -110.32 REMARK 500 ASN A 36 -96.56 73.29 REMARK 500 ALA A 46 -15.84 70.08 REMARK 500 TYR A 58 54.98 -99.52 REMARK 500 LYS A 70 -135.99 52.26 REMARK 500 LYS A 74 -156.01 -153.81 REMARK 500 SER A 94 87.56 -153.20 REMARK 500 THR A 118 30.39 -88.13 REMARK 500 PRO A 223 -172.74 -68.84 REMARK 500 ASN A 241 63.66 -152.20 REMARK 500 THR A 308 -167.52 -122.55 REMARK 500 ASP A 318 -133.71 58.74 REMARK 500 ASN A 341 -169.30 -73.22 REMARK 500 MET A 350 -70.05 -83.24 REMARK 500 GLU A 368 -76.43 65.20 REMARK 500 PHE A 382 -126.07 53.56 REMARK 500 VAL A 430 106.62 -57.13 REMARK 500 ALA A 495 15.54 55.59 REMARK 500 SER A 499 -60.98 -91.04 REMARK 500 ASN A 504 -100.71 -112.00 REMARK 500 SER A 505 -34.12 -130.28 REMARK 500 ASP A 548 49.54 -81.75 REMARK 500 THR A 562 -59.34 57.20 REMARK 500 ILE A 564 73.46 53.88 REMARK 500 LEU A 631 -74.37 -104.80 REMARK 500 GLU A 675 146.40 -178.25 REMARK 500 ASN A 695 -147.22 -120.97 REMARK 500 ASP A 705 -160.65 -73.62 REMARK 500 GLN A 759 34.16 -83.93 REMARK 500 GLN A 796 3.81 -65.85 REMARK 500 HIS A 797 -68.55 -121.94 REMARK 500 LYS A 867 35.05 -84.48 REMARK 500 ASN A 885 -110.01 61.90 REMARK 500 GLU A 896 2.83 -64.86 REMARK 500 GLU A 902 -82.32 -104.31 REMARK 500 ASN A 908 -7.03 69.81 REMARK 500 ILE A 945 -80.62 -59.84 REMARK 500 ALA A 971 49.31 75.63 REMARK 500 VAL A1061 -68.38 -91.06 REMARK 500 ARG A1080 -100.32 -86.33 REMARK 500 THR B 52 -9.56 -58.37 REMARK 500 HIS B 58 51.83 39.87 REMARK 500 ASP B 77 0.20 59.74 REMARK 500 PHE B 103 -5.59 -140.47 REMARK 500 LYS B 117 -125.69 -137.09 REMARK 500 ARG B 163 -74.50 -121.02 REMARK 500 ALA B 221 -38.35 87.64 REMARK 500 THR B 321 -66.03 -133.99 REMARK 500 GLN B 329 -39.23 77.21 REMARK 500 REMARK 500 THIS ENTRY HAS 51 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1428 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 325 SG REMARK 620 2 CYS B 328 SG 116.8 REMARK 620 3 CYS B 393 SG 113.4 105.3 REMARK 620 4 CYS B 396 SG 107.2 104.7 108.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1428 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LVY B 1429 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CI1 RELATED DB: PDB REMARK 900 RELATED ID: 4CI3 RELATED DB: PDB REMARK 900 RELATED ID: 3EI1 RELATED DB: PDB REMARK 900 RELATED ID: 3EI2 RELATED DB: PDB REMARK 900 RELATED ID: 3EI3 RELATED DB: PDB REMARK 900 RELATED ID: 3EI4 RELATED DB: PDB REMARK 900 RELATED ID: 2B5M RELATED DB: PDB REMARK 900 RELATED ID: 2B5L RELATED DB: PDB REMARK 900 RELATED ID: 3E0C RELATED DB: PDB REMARK 900 RELATED ID: 4A11 RELATED DB: PDB DBREF 4CI2 A 1 1140 UNP Q16531 DDB1_HUMAN 1 1140 DBREF 4CI2 B 1 445 UNP P0CF65 CRBN_CHICK 1 445 SEQADV 4CI2 MET A -17 UNP Q16531 EXPRESSION TAG SEQADV 4CI2 HIS A -16 UNP Q16531 EXPRESSION TAG SEQADV 4CI2 HIS A -15 UNP Q16531 EXPRESSION TAG SEQADV 4CI2 HIS A -14 UNP Q16531 EXPRESSION TAG SEQADV 4CI2 HIS A -13 UNP Q16531 EXPRESSION TAG SEQADV 4CI2 HIS A -12 UNP Q16531 EXPRESSION TAG SEQADV 4CI2 HIS A -11 UNP Q16531 EXPRESSION TAG SEQADV 4CI2 ARG A -10 UNP Q16531 EXPRESSION TAG SEQADV 4CI2 ARG A -9 UNP Q16531 EXPRESSION TAG SEQADV 4CI2 LEU A -8 UNP Q16531 EXPRESSION TAG SEQADV 4CI2 VAL A -7 UNP Q16531 EXPRESSION TAG SEQADV 4CI2 PRO A -6 UNP Q16531 EXPRESSION TAG SEQADV 4CI2 ARG A -5 UNP Q16531 EXPRESSION TAG SEQADV 4CI2 GLY A -4 UNP Q16531 EXPRESSION TAG SEQADV 4CI2 SER A -3 UNP Q16531 EXPRESSION TAG SEQADV 4CI2 GLY A -2 UNP Q16531 EXPRESSION TAG SEQADV 4CI2 GLY A -1 UNP Q16531 EXPRESSION TAG SEQADV 4CI2 ARG A 0 UNP Q16531 EXPRESSION TAG SEQADV 4CI2 MET B -23 UNP P0CF65 EXPRESSION TAG SEQADV 4CI2 ASP B -22 UNP P0CF65 EXPRESSION TAG SEQADV 4CI2 TRP B -21 UNP P0CF65 EXPRESSION TAG SEQADV 4CI2 SER B -20 UNP P0CF65 EXPRESSION TAG SEQADV 4CI2 HIS B -19 UNP P0CF65 EXPRESSION TAG SEQADV 4CI2 PRO B -18 UNP P0CF65 EXPRESSION TAG SEQADV 4CI2 GLN B -17 UNP P0CF65 EXPRESSION TAG SEQADV 4CI2 PHE B -16 UNP P0CF65 EXPRESSION TAG SEQADV 4CI2 GLU B -15 UNP P0CF65 EXPRESSION TAG SEQADV 4CI2 LYS B -14 UNP P0CF65 EXPRESSION TAG SEQADV 4CI2 SER B -13 UNP P0CF65 EXPRESSION TAG SEQADV 4CI2 ALA B -12 UNP P0CF65 EXPRESSION TAG SEQADV 4CI2 VAL B -11 UNP P0CF65 EXPRESSION TAG SEQADV 4CI2 ASP B -10 UNP P0CF65 EXPRESSION TAG SEQADV 4CI2 GLU B -9 UNP P0CF65 EXPRESSION TAG SEQADV 4CI2 ASN B -8 UNP P0CF65 EXPRESSION TAG SEQADV 4CI2 LEU B -7 UNP P0CF65 EXPRESSION TAG SEQADV 4CI2 TYR B -6 UNP P0CF65 EXPRESSION TAG SEQADV 4CI2 PHE B -5 UNP P0CF65 EXPRESSION TAG SEQADV 4CI2 GLN B -4 UNP P0CF65 EXPRESSION TAG SEQADV 4CI2 GLY B -3 UNP P0CF65 EXPRESSION TAG SEQADV 4CI2 GLY B -2 UNP P0CF65 EXPRESSION TAG SEQADV 4CI2 GLY B -1 UNP P0CF65 EXPRESSION TAG SEQADV 4CI2 ARG B 0 UNP P0CF65 EXPRESSION TAG SEQRES 1 A 1158 MET HIS HIS HIS HIS HIS HIS ARG ARG LEU VAL PRO ARG SEQRES 2 A 1158 GLY SER GLY GLY ARG MET SER TYR ASN TYR VAL VAL THR SEQRES 3 A 1158 ALA GLN LYS PRO THR ALA VAL ASN GLY CYS VAL THR GLY SEQRES 4 A 1158 HIS PHE THR SER ALA GLU ASP LEU ASN LEU LEU ILE ALA SEQRES 5 A 1158 LYS ASN THR ARG LEU GLU ILE TYR VAL VAL THR ALA GLU SEQRES 6 A 1158 GLY LEU ARG PRO VAL LYS GLU VAL GLY MET TYR GLY LYS SEQRES 7 A 1158 ILE ALA VAL MET GLU LEU PHE ARG PRO LYS GLY GLU SER SEQRES 8 A 1158 LYS ASP LEU LEU PHE ILE LEU THR ALA LYS TYR ASN ALA SEQRES 9 A 1158 CYS ILE LEU GLU TYR LYS GLN SER GLY GLU SER ILE ASP SEQRES 10 A 1158 ILE ILE THR ARG ALA HIS GLY ASN VAL GLN ASP ARG ILE SEQRES 11 A 1158 GLY ARG PRO SER GLU THR GLY ILE ILE GLY ILE ILE ASP SEQRES 12 A 1158 PRO GLU CYS ARG MET ILE GLY LEU ARG LEU TYR ASP GLY SEQRES 13 A 1158 LEU PHE LYS VAL ILE PRO LEU ASP ARG ASP ASN LYS GLU SEQRES 14 A 1158 LEU LYS ALA PHE ASN ILE ARG LEU GLU GLU LEU HIS VAL SEQRES 15 A 1158 ILE ASP VAL LYS PHE LEU TYR GLY CYS GLN ALA PRO THR SEQRES 16 A 1158 ILE CYS PHE VAL TYR GLN ASP PRO GLN GLY ARG HIS VAL SEQRES 17 A 1158 LYS THR TYR GLU VAL SER LEU ARG GLU LYS GLU PHE ASN SEQRES 18 A 1158 LYS GLY PRO TRP LYS GLN GLU ASN VAL GLU ALA GLU ALA SEQRES 19 A 1158 SER MET VAL ILE ALA VAL PRO GLU PRO PHE GLY GLY ALA SEQRES 20 A 1158 ILE ILE ILE GLY GLN GLU SER ILE THR TYR HIS ASN GLY SEQRES 21 A 1158 ASP LYS TYR LEU ALA ILE ALA PRO PRO ILE ILE LYS GLN SEQRES 22 A 1158 SER THR ILE VAL CYS HIS ASN ARG VAL ASP PRO ASN GLY SEQRES 23 A 1158 SER ARG TYR LEU LEU GLY ASP MET GLU GLY ARG LEU PHE SEQRES 24 A 1158 MET LEU LEU LEU GLU LYS GLU GLU GLN MET ASP GLY THR SEQRES 25 A 1158 VAL THR LEU LYS ASP LEU ARG VAL GLU LEU LEU GLY GLU SEQRES 26 A 1158 THR SER ILE ALA GLU CYS LEU THR TYR LEU ASP ASN GLY SEQRES 27 A 1158 VAL VAL PHE VAL GLY SER ARG LEU GLY ASP SER GLN LEU SEQRES 28 A 1158 VAL LYS LEU ASN VAL ASP SER ASN GLU GLN GLY SER TYR SEQRES 29 A 1158 VAL VAL ALA MET GLU THR PHE THR ASN LEU GLY PRO ILE SEQRES 30 A 1158 VAL ASP MET CYS VAL VAL ASP LEU GLU ARG GLN GLY GLN SEQRES 31 A 1158 GLY GLN LEU VAL THR CYS SER GLY ALA PHE LYS GLU GLY SEQRES 32 A 1158 SER LEU ARG ILE ILE ARG ASN GLY ILE GLY ILE HIS GLU SEQRES 33 A 1158 HIS ALA SER ILE ASP LEU PRO GLY ILE LYS GLY LEU TRP SEQRES 34 A 1158 PRO LEU ARG SER ASP PRO ASN ARG GLU THR ASP ASP THR SEQRES 35 A 1158 LEU VAL LEU SER PHE VAL GLY GLN THR ARG VAL LEU MET SEQRES 36 A 1158 LEU ASN GLY GLU GLU VAL GLU GLU THR GLU LEU MET GLY SEQRES 37 A 1158 PHE VAL ASP ASP GLN GLN THR PHE PHE CYS GLY ASN VAL SEQRES 38 A 1158 ALA HIS GLN GLN LEU ILE GLN ILE THR SER ALA SER VAL SEQRES 39 A 1158 ARG LEU VAL SER GLN GLU PRO LYS ALA LEU VAL SER GLU SEQRES 40 A 1158 TRP LYS GLU PRO GLN ALA LYS ASN ILE SER VAL ALA SER SEQRES 41 A 1158 CYS ASN SER SER GLN VAL VAL VAL ALA VAL GLY ARG ALA SEQRES 42 A 1158 LEU TYR TYR LEU GLN ILE HIS PRO GLN GLU LEU ARG GLN SEQRES 43 A 1158 ILE SER HIS THR GLU MET GLU HIS GLU VAL ALA CYS LEU SEQRES 44 A 1158 ASP ILE THR PRO LEU GLY ASP SER ASN GLY LEU SER PRO SEQRES 45 A 1158 LEU CYS ALA ILE GLY LEU TRP THR ASP ILE SER ALA ARG SEQRES 46 A 1158 ILE LEU LYS LEU PRO SER PHE GLU LEU LEU HIS LYS GLU SEQRES 47 A 1158 MET LEU GLY GLY GLU ILE ILE PRO ARG SER ILE LEU MET SEQRES 48 A 1158 THR THR PHE GLU SER SER HIS TYR LEU LEU CYS ALA LEU SEQRES 49 A 1158 GLY ASP GLY ALA LEU PHE TYR PHE GLY LEU ASN ILE GLU SEQRES 50 A 1158 THR GLY LEU LEU SER ASP ARG LYS LYS VAL THR LEU GLY SEQRES 51 A 1158 THR GLN PRO THR VAL LEU ARG THR PHE ARG SER LEU SER SEQRES 52 A 1158 THR THR ASN VAL PHE ALA CYS SER ASP ARG PRO THR VAL SEQRES 53 A 1158 ILE TYR SER SER ASN HIS LYS LEU VAL PHE SER ASN VAL SEQRES 54 A 1158 ASN LEU LYS GLU VAL ASN TYR MET CYS PRO LEU ASN SER SEQRES 55 A 1158 ASP GLY TYR PRO ASP SER LEU ALA LEU ALA ASN ASN SER SEQRES 56 A 1158 THR LEU THR ILE GLY THR ILE ASP GLU ILE GLN LYS LEU SEQRES 57 A 1158 HIS ILE ARG THR VAL PRO LEU TYR GLU SER PRO ARG LYS SEQRES 58 A 1158 ILE CYS TYR GLN GLU VAL SER GLN CYS PHE GLY VAL LEU SEQRES 59 A 1158 SER SER ARG ILE GLU VAL GLN ASP THR SER GLY GLY THR SEQRES 60 A 1158 THR ALA LEU ARG PRO SER ALA SER THR GLN ALA LEU SER SEQRES 61 A 1158 SER SER VAL SER SER SER LYS LEU PHE SER SER SER THR SEQRES 62 A 1158 ALA PRO HIS GLU THR SER PHE GLY GLU GLU VAL GLU VAL SEQRES 63 A 1158 HIS ASN LEU LEU ILE ILE ASP GLN HIS THR PHE GLU VAL SEQRES 64 A 1158 LEU HIS ALA HIS GLN PHE LEU GLN ASN GLU TYR ALA LEU SEQRES 65 A 1158 SER LEU VAL SER CYS LYS LEU GLY LYS ASP PRO ASN THR SEQRES 66 A 1158 TYR PHE ILE VAL GLY THR ALA MET VAL TYR PRO GLU GLU SEQRES 67 A 1158 ALA GLU PRO LYS GLN GLY ARG ILE VAL VAL PHE GLN TYR SEQRES 68 A 1158 SER ASP GLY LYS LEU GLN THR VAL ALA GLU LYS GLU VAL SEQRES 69 A 1158 LYS GLY ALA VAL TYR SER MET VAL GLU PHE ASN GLY LYS SEQRES 70 A 1158 LEU LEU ALA SER ILE ASN SER THR VAL ARG LEU TYR GLU SEQRES 71 A 1158 TRP THR THR GLU LYS GLU LEU ARG THR GLU CYS ASN HIS SEQRES 72 A 1158 TYR ASN ASN ILE MET ALA LEU TYR LEU LYS THR LYS GLY SEQRES 73 A 1158 ASP PHE ILE LEU VAL GLY ASP LEU MET ARG SER VAL LEU SEQRES 74 A 1158 LEU LEU ALA TYR LYS PRO MET GLU GLY ASN PHE GLU GLU SEQRES 75 A 1158 ILE ALA ARG ASP PHE ASN PRO ASN TRP MET SER ALA VAL SEQRES 76 A 1158 GLU ILE LEU ASP ASP ASP ASN PHE LEU GLY ALA GLU ASN SEQRES 77 A 1158 ALA PHE ASN LEU PHE VAL CYS GLN LYS ASP SER ALA ALA SEQRES 78 A 1158 THR THR ASP GLU GLU ARG GLN HIS LEU GLN GLU VAL GLY SEQRES 79 A 1158 LEU PHE HIS LEU GLY GLU PHE VAL ASN VAL PHE CYS HIS SEQRES 80 A 1158 GLY SER LEU VAL MET GLN ASN LEU GLY GLU THR SER THR SEQRES 81 A 1158 PRO THR GLN GLY SER VAL LEU PHE GLY THR VAL ASN GLY SEQRES 82 A 1158 MET ILE GLY LEU VAL THR SER LEU SER GLU SER TRP TYR SEQRES 83 A 1158 ASN LEU LEU LEU ASP MET GLN ASN ARG LEU ASN LYS VAL SEQRES 84 A 1158 ILE LYS SER VAL GLY LYS ILE GLU HIS SER PHE TRP ARG SEQRES 85 A 1158 SER PHE HIS THR GLU ARG LYS THR GLU PRO ALA THR GLY SEQRES 86 A 1158 PHE ILE ASP GLY ASP LEU ILE GLU SER PHE LEU ASP ILE SEQRES 87 A 1158 SER ARG PRO LYS MET GLN GLU VAL VAL ALA ASN LEU GLN SEQRES 88 A 1158 TYR ASP ASP GLY SER GLY MET LYS ARG GLU ALA THR ALA SEQRES 89 A 1158 ASP ASP LEU ILE LYS VAL VAL GLU GLU LEU THR ARG ILE SEQRES 90 A 1158 HIS SEQRES 1 B 469 MET ASP TRP SER HIS PRO GLN PHE GLU LYS SER ALA VAL SEQRES 2 B 469 ASP GLU ASN LEU TYR PHE GLN GLY GLY GLY ARG MET ALA SEQRES 3 B 469 ALA GLU GLU GLY GLY ASP GLY ARG ARG ASN MET GLY ASN SEQRES 4 B 469 PRO PRO PRO PRO ALA PRO ALA GLU SER GLU GLU GLU ASP SEQRES 5 B 469 ASP ASN GLU MET GLU VAL GLU ASP GLN ASP GLY LYS GLU SEQRES 6 B 469 ALA GLU LYS PRO ASN MET ILE ASN PHE ASP THR SER LEU SEQRES 7 B 469 PRO THR SER HIS MET TYR LEU GLY SER ASP MET GLU GLU SEQRES 8 B 469 PHE HIS GLY ARG THR LEU HIS ASP ASP ASP SER CYS GLN SEQRES 9 B 469 VAL ILE PRO VAL LEU PRO HIS VAL MET VAL MET LEU ILE SEQRES 10 B 469 PRO GLY GLN THR LEU PRO LEU GLN LEU PHE HIS PRO GLN SEQRES 11 B 469 GLU VAL SER MET VAL ARG ASN LEU ILE GLN LYS ASP ARG SEQRES 12 B 469 THR PHE ALA VAL LEU ALA TYR SER ASN VAL ARG GLU ARG SEQRES 13 B 469 GLU ALA HIS PHE GLY THR THR ALA GLU ILE TYR ALA TYR SEQRES 14 B 469 ARG GLU GLU GLN GLU TYR GLY ILE GLU THR VAL LYS VAL SEQRES 15 B 469 LYS ALA ILE GLY ARG GLN ARG PHE LYS VAL LEU GLU ILE SEQRES 16 B 469 ARG THR GLN SER ASP GLY ILE GLN GLN ALA LYS VAL GLN SEQRES 17 B 469 ILE LEU PRO GLU ARG VAL LEU PRO SER THR MET SER ALA SEQRES 18 B 469 VAL GLN LEU GLN SER LEU SER ARG ARG HIS ILE PHE PRO SEQRES 19 B 469 SER SER LYS PRO LYS VAL TRP GLN ASP ARG ALA PHE ARG SEQRES 20 B 469 GLN TRP TRP GLN LYS TYR GLN LYS ARG LYS PHE HIS CYS SEQRES 21 B 469 ALA SER LEU THR SER TRP PRO PRO TRP LEU TYR SER LEU SEQRES 22 B 469 TYR ASP ALA GLU THR LEU MET GLU ARG VAL LYS ARG GLN SEQRES 23 B 469 LEU HIS GLU TRP ASP GLU ASN LEU LYS ASP GLU SER LEU SEQRES 24 B 469 PRO THR ASN PRO ILE ASP PHE SER TYR ARG VAL ALA ALA SEQRES 25 B 469 CYS LEU PRO ILE ASP ASP ALA LEU ARG ILE GLN LEU LEU SEQRES 26 B 469 LYS ILE GLY SER ALA ILE GLN ARG LEU ARG CYS GLU LEU SEQRES 27 B 469 ASP ILE MET ASN LYS CYS THR SER LEU CYS CYS LYS GLN SEQRES 28 B 469 CYS GLN ASP THR GLU ILE THR THR LYS ASN GLU ILE PHE SEQRES 29 B 469 SER LEU SER LEU CYS GLY PRO MET ALA ALA TYR VAL ASN SEQRES 30 B 469 PRO HIS GLY TYR ILE HIS GLU THR LEU THR VAL TYR LYS SEQRES 31 B 469 ALA CYS ASN LEU ASN LEU SER GLY ARG PRO SER THR GLU SEQRES 32 B 469 HIS SER TRP PHE PRO GLY TYR ALA TRP THR ILE ALA GLN SEQRES 33 B 469 CYS ARG ILE CYS GLY ASN HIS MET GLY TRP LYS PHE THR SEQRES 34 B 469 ALA THR LYS LYS ASP MET SER PRO GLN LYS PHE TRP GLY SEQRES 35 B 469 LEU THR ARG SER ALA LEU LEU PRO ARG ILE PRO GLU ALA SEQRES 36 B 469 GLU ASP GLU LEU GLY HIS ASP ARG SER PRO LEU LEU CYS SEQRES 37 B 469 LEU HET ZN B1428 1 HET LVY B1429 19 HETNAM ZN ZINC ION HETNAM LVY S-LENALIDOMIDE FORMUL 3 ZN ZN 2+ FORMUL 4 LVY C13 H13 N3 O3 FORMUL 5 HOH *8(H2 O) HELIX 1 1 PRO A 250 LYS A 254 5 5 HELIX 2 2 ALA A 381 GLU A 384 5 4 HELIX 3 3 THR A 985 GLN A 990 1 6 HELIX 4 4 SER A 1044 ILE A 1062 1 19 HELIX 5 5 GLU A 1069 ARG A 1074 1 6 HELIX 6 6 GLY A 1091 GLU A 1095 1 5 HELIX 7 7 SER A 1096 LEU A 1098 5 3 HELIX 8 8 SER A 1101 ALA A 1110 1 10 HELIX 9 9 THR A 1125 ARG A 1138 1 14 HELIX 10 10 THR B 52 SER B 57 1 6 HELIX 11 11 HIS B 58 GLY B 62 5 5 HELIX 12 12 HIS B 104 GLN B 116 1 13 HELIX 13 13 PHE B 222 PHE B 234 1 13 HELIX 14 14 HIS B 235 THR B 240 5 6 HELIX 15 15 PRO B 243 SER B 248 1 6 HELIX 16 16 ASP B 251 ASP B 267 1 17 HELIX 17 17 ASN B 278 CYS B 289 1 12 HELIX 18 18 ASP B 293 ILE B 303 1 11 HELIX 19 19 SER B 305 CYS B 320 1 16 SHEET 1 AA 5 VAL A1004 HIS A1009 0 SHEET 2 AA 5 GLN A1025 THR A1032 -1 O LEU A1029 N CYS A1008 SHEET 3 AA 5 ILE A1037 LEU A1043 -1 O GLY A1038 N PHE A1030 SHEET 4 AA 5 TYR A 3 GLN A 10 -1 O TYR A 3 N LEU A1043 SHEET 5 AA 5 PHE A1088 ASP A1090 1 O ILE A1089 N VAL A 6 SHEET 1 AB 4 GLY A 17 GLY A 21 0 SHEET 2 AB 4 ASN A 30 LYS A 35 -1 O ASN A 30 N GLY A 21 SHEET 3 AB 4 ARG A 38 VAL A 43 -1 O ARG A 38 N LYS A 35 SHEET 4 AB 4 ARG A 50 GLY A 56 -1 O ARG A 50 N VAL A 43 SHEET 1 AC 4 ILE A 61 PHE A 67 0 SHEET 2 AC 4 LEU A 76 THR A 81 -1 O LEU A 76 N PHE A 67 SHEET 3 AC 4 ASN A 85 SER A 94 -1 O ASN A 85 N THR A 81 SHEET 4 AC 4 SER A 97 ASN A 107 -1 O SER A 97 N SER A 94 SHEET 1 AD 3 ILE A 121 ILE A 124 0 SHEET 2 AD 3 ILE A 131 ARG A 134 -1 O GLY A 132 N ILE A 123 SHEET 3 AD 3 LYS A 141 ILE A 143 -1 O LYS A 141 N LEU A 133 SHEET 1 AE 4 VAL A 164 PHE A 169 0 SHEET 2 AE 4 THR A 177 ASP A 184 -1 O CYS A 179 N LYS A 168 SHEET 3 AE 4 GLY A 187 SER A 196 -1 O GLY A 187 N ASP A 184 SHEET 4 AE 4 GLU A 201 LYS A 204 -1 O GLU A 201 N SER A 196 SHEET 1 AF 4 MET A 218 ALA A 221 0 SHEET 2 AF 4 ALA A 229 ILE A 232 -1 O ILE A 230 N ILE A 220 SHEET 3 AF 4 ILE A 237 ASN A 241 -1 O THR A 238 N ILE A 231 SHEET 4 AF 4 LYS A 244 TYR A 245 -1 O LYS A 244 N ASN A 241 SHEET 1 AG 4 ILE A 258 ARG A 263 0 SHEET 2 AG 4 ARG A 270 ASP A 275 -1 O LEU A 272 N ASN A 262 SHEET 3 AG 4 ARG A 279 LEU A 284 -1 O ARG A 279 N ASP A 275 SHEET 4 AG 4 ARG A 301 GLU A 307 -1 O ARG A 301 N LEU A 284 SHEET 1 AH 4 ALA A 311 LEU A 317 0 SHEET 2 AH 4 VAL A 321 SER A 326 -1 O VAL A 321 N LEU A 317 SHEET 3 AH 4 SER A 331 LYS A 335 -1 O GLN A 332 N VAL A 324 SHEET 4 AH 4 VAL A 348 PHE A 353 -1 O VAL A 348 N LYS A 335 SHEET 1 AI 4 ILE A 359 VAL A 365 0 SHEET 2 AI 4 GLN A 374 SER A 379 -1 O GLN A 374 N VAL A 365 SHEET 3 AI 4 SER A 386 ASN A 392 -1 O SER A 386 N SER A 379 SHEET 4 AI 4 LEU A 710 PRO A 716 -1 O HIS A 711 N ARG A 391 SHEET 1 AJ 4 ILE A 396 ASP A 403 0 SHEET 2 AJ 4 THR A 698 ILE A 704 -1 O LEU A 699 N ILE A 402 SHEET 3 AJ 4 SER A 690 ALA A 694 -1 O LEU A 691 N GLY A 702 SHEET 4 AJ 4 TYR A 678 LEU A 682 -1 O TYR A 678 N ALA A 694 SHEET 1 AK 4 GLY A 409 LEU A 413 0 SHEET 2 AK 4 THR A 424 PHE A 429 -1 O THR A 424 N LEU A 413 SHEET 3 AK 4 GLN A 432 ASN A 439 -1 O GLN A 432 N PHE A 429 SHEET 4 AK 4 GLU A 442 THR A 446 -1 O GLU A 442 N ASN A 439 SHEET 1 AL 4 THR A 457 VAL A 463 0 SHEET 2 AL 4 GLN A 467 THR A 472 -1 O GLN A 467 N VAL A 463 SHEET 3 AL 4 VAL A 476 SER A 480 -1 O ARG A 477 N GLN A 470 SHEET 4 AL 4 ALA A 485 TRP A 490 -1 O ALA A 485 N SER A 480 SHEET 1 AM 4 VAL A 500 CYS A 503 0 SHEET 2 AM 4 GLN A 507 VAL A 512 -1 O VAL A 509 N SER A 502 SHEET 3 AM 4 ALA A 515 HIS A 522 -1 O ALA A 515 N VAL A 512 SHEET 4 AM 4 GLU A 525 GLU A 533 -1 O GLU A 525 N HIS A 522 SHEET 1 AN 4 VAL A 538 ASP A 542 0 SHEET 2 AN 4 LEU A 555 LEU A 560 -1 O ALA A 557 N ASP A 542 SHEET 3 AN 4 SER A 565 LYS A 570 -1 O SER A 565 N LEU A 560 SHEET 4 AN 4 LEU A 576 MET A 581 -1 N LEU A 577 O ILE A 568 SHEET 1 AO 4 PRO A 588 PHE A 596 0 SHEET 2 AO 4 SER A 599 LEU A 606 -1 O SER A 599 N PHE A 596 SHEET 3 AO 4 ALA A 610 LEU A 616 -1 O ALA A 610 N LEU A 606 SHEET 4 AO 4 LEU A 623 THR A 630 -1 O SER A 624 N GLY A 615 SHEET 1 AP 4 VAL A 637 ARG A 642 0 SHEET 2 AP 4 THR A 647 CYS A 652 -1 O ASN A 648 N PHE A 641 SHEET 3 AP 4 THR A 657 SER A 662 -1 O THR A 657 N ALA A 651 SHEET 4 AP 4 LYS A 665 ASN A 670 -1 O LYS A 665 N SER A 662 SHEET 1 AQ 2 SER A 720 GLN A 727 0 SHEET 2 AQ 2 CYS A 732 GLN A 743 -1 O CYS A 732 N GLN A 727 SHEET 1 AR 2 THR A 749 ALA A 751 0 SHEET 2 AR 2 CYS A 732 GLN A 743 1 O VAL A 742 N THR A 750 SHEET 1 AS 5 SER A 762 VAL A 765 0 SHEET 2 AS 5 VAL A 801 GLN A 806 1 O LEU A 802 N SER A 762 SHEET 3 AS 5 GLU A 785 ASP A 795 -1 O LEU A 791 N HIS A 805 SHEET 4 AS 5 CYS A 732 GLN A 743 -1 O PHE A 733 N ILE A 794 SHEET 5 AS 5 THR A 749 ALA A 751 1 O THR A 750 N VAL A 742 SHEET 1 AT 5 SER A 762 VAL A 765 0 SHEET 2 AT 5 VAL A 801 GLN A 806 1 O LEU A 802 N SER A 762 SHEET 3 AT 5 GLU A 785 ASP A 795 -1 O LEU A 791 N HIS A 805 SHEET 4 AT 5 CYS A 732 GLN A 743 -1 O PHE A 733 N ILE A 794 SHEET 5 AT 5 SER A 720 GLN A 727 -1 O SER A 720 N SER A 738 SHEET 1 AU 4 GLU A 811 CYS A 819 0 SHEET 2 AU 4 TYR A 828 MET A 835 -1 O TYR A 828 N CYS A 819 SHEET 3 AU 4 GLY A 846 SER A 854 -1 O ARG A 847 N THR A 833 SHEET 4 AU 4 LYS A 857 VAL A 866 -1 O LYS A 857 N SER A 854 SHEET 1 AV 4 VAL A 870 PHE A 876 0 SHEET 2 AV 4 LYS A 879 ILE A 884 -1 O LYS A 879 N PHE A 876 SHEET 3 AV 4 THR A 887 TRP A 893 -1 O THR A 887 N ILE A 884 SHEET 4 AV 4 LEU A 899 TYR A 906 -1 O ARG A 900 N GLU A 892 SHEET 1 AW 4 TYR A 913 LYS A 917 0 SHEET 2 AW 4 PHE A 920 GLY A 924 -1 O PHE A 920 N LYS A 917 SHEET 3 AW 4 SER A 929 LYS A 936 -1 O LEU A 931 N VAL A 923 SHEET 4 AW 4 ASN A 941 PHE A 949 -1 O ASN A 941 N LYS A 936 SHEET 1 AX 4 MET A 954 ILE A 959 0 SHEET 2 AX 4 PHE A 965 GLU A 969 -1 O LEU A 966 N GLU A 958 SHEET 3 AX 4 ASN A 973 GLN A 978 -1 O ASN A 973 N GLU A 969 SHEET 4 AX 4 GLN A 993 HIS A 999 -1 O GLN A 993 N GLN A 978 SHEET 1 BA 2 GLU B 66 GLU B 67 0 SHEET 2 BA 2 GLU B 133 GLU B 150 -1 O TYR B 145 N GLU B 66 SHEET 1 BB 2 THR B 97 LEU B 102 0 SHEET 2 BB 2 ILE B 153 THR B 173 -1 O VAL B 156 N LEU B 102 SHEET 1 BC 3 GLU B 332 THR B 335 0 SHEET 2 BC 3 SER B 322 CYS B 325 -1 O LEU B 323 N ILE B 333 SHEET 3 BC 3 LEU B 424 LEU B 425 -1 O LEU B 425 N CYS B 324 SHEET 1 BD 6 MET B 348 VAL B 352 0 SHEET 2 BD 6 ILE B 358 VAL B 364 -1 O HIS B 359 N TYR B 351 SHEET 3 BD 6 LYS B 415 THR B 420 -1 O TRP B 417 N VAL B 364 SHEET 4 BD 6 HIS B 399 ALA B 406 -1 O MET B 400 N THR B 420 SHEET 5 BD 6 TYR B 386 CYS B 393 -1 O ALA B 387 N THR B 405 SHEET 6 BD 6 LEU B 370 SER B 377 -1 O ASN B 371 N GLN B 392 LINK SG CYS B 325 ZN ZN B1428 1555 1555 2.14 LINK SG CYS B 328 ZN ZN B1428 1555 1555 2.20 LINK SG CYS B 393 ZN ZN B1428 1555 1555 2.27 LINK SG CYS B 396 ZN ZN B1428 1555 1555 2.24 CISPEP 1 GLU A 224 PRO A 225 0 4.48 CISPEP 2 GLY A 357 PRO A 358 0 -2.97 CISPEP 3 GLU A 482 PRO A 483 0 -3.94 CISPEP 4 LEU A 571 PRO A 572 0 9.09 CISPEP 5 SER B 412 PRO B 413 0 1.38 SITE 1 AC1 4 CYS B 325 CYS B 328 CYS B 393 CYS B 396 SITE 1 AC2 11 GLN B 149 ASN B 353 PRO B 354 HIS B 355 SITE 2 AC2 11 HIS B 380 SER B 381 TRP B 382 TRP B 388 SITE 3 AC2 11 ARG B 394 TRP B 402 PHE B 404 CRYST1 172.110 172.110 139.840 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005810 0.003355 0.000000 0.00000 SCALE2 0.000000 0.006709 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007151 0.00000