HEADER TRANSFERASE 05-DEC-13 4CI4 TITLE STRUCTURAL BASIS FOR GL479 A DUAL PEROXISOME PROLIFERATOR-ACTIVATED TITLE 2 RECEPTOR ALPHA AGONIST COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN, RESDIUES 195-468; COMPND 5 SYNONYM: PPAR-ALPHA, NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 1; COMPND 6 EC: 2.3.1.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TRANSFERASE, DUAL AGONIST, PPAR, NUCLEAR RECEPTOR, GL479 EXPDTA X-RAY DIFFRACTION AUTHOR J.C.SANTOS,A.BERNARDES,I.POLIKARPOV REVDAT 5 20-DEC-23 4CI4 1 REMARK REVDAT 4 16-JAN-19 4CI4 1 JRNL REVDAT 3 09-SEP-15 4CI4 1 JRNL REVDAT 2 05-AUG-15 4CI4 1 JRNL REVDAT 1 24-DEC-14 4CI4 0 JRNL AUTH J.C.DOS SANTOS,A.BERNARDES,L.GIAMPIETRO,A.AMMAZZALORSO, JRNL AUTH 2 B.DE FILIPPIS,R.AMOROSO,I.POLIKARPOV JRNL TITL DIFFERENT BINDING AND RECOGNITION MODES OF GL479, A DUAL JRNL TITL 2 AGONIST OF PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR ALPHA JRNL TITL 3 / GAMMA. JRNL REF J. STRUCT. BIOL. V. 191 332 2015 JRNL REFN ESSN 1095-8657 JRNL PMID 26185032 JRNL DOI 10.1016/J.JSB.2015.07.006 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 12191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.7878 - 3.6537 0.99 3040 158 0.1917 0.2284 REMARK 3 2 3.6537 - 2.9002 1.00 2911 143 0.2222 0.2534 REMARK 3 3 2.9002 - 2.5336 1.00 2852 134 0.2620 0.3425 REMARK 3 4 2.5336 - 2.3020 0.99 2808 145 0.2481 0.3148 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2008 REMARK 3 ANGLE : 1.100 2712 REMARK 3 CHIRALITY : 0.072 313 REMARK 3 PLANARITY : 0.004 343 REMARK 3 DIHEDRAL : 15.908 743 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 204 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.6091 21.8863 -6.7517 REMARK 3 T TENSOR REMARK 3 T11: 0.9926 T22: 0.3693 REMARK 3 T33: 0.7798 T12: -0.1410 REMARK 3 T13: 0.1059 T23: -0.0747 REMARK 3 L TENSOR REMARK 3 L11: 8.9774 L22: 2.4684 REMARK 3 L33: 7.1843 L12: -1.7644 REMARK 3 L13: 0.8811 L23: -1.2882 REMARK 3 S TENSOR REMARK 3 S11: -0.4324 S12: -0.4409 S13: 2.0691 REMARK 3 S21: -0.9377 S22: 0.6770 S23: -1.2152 REMARK 3 S31: -1.8401 S32: -0.3198 S33: -0.2575 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 218 THROUGH 243 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3851 12.1212 4.9758 REMARK 3 T TENSOR REMARK 3 T11: 0.5946 T22: 0.9225 REMARK 3 T33: 0.6225 T12: 0.0823 REMARK 3 T13: -0.0070 T23: -0.3547 REMARK 3 L TENSOR REMARK 3 L11: 5.9957 L22: 4.0780 REMARK 3 L33: 4.6105 L12: -2.3071 REMARK 3 L13: 2.5826 L23: 0.6357 REMARK 3 S TENSOR REMARK 3 S11: -0.7561 S12: -1.2331 S13: 0.2323 REMARK 3 S21: 0.6683 S22: 1.4195 S23: -0.7479 REMARK 3 S31: -0.4282 S32: 1.4651 S33: -0.3144 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 244 THROUGH 268 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9637 3.3287 20.9467 REMARK 3 T TENSOR REMARK 3 T11: 1.0523 T22: 1.6022 REMARK 3 T33: 0.7398 T12: 0.3103 REMARK 3 T13: -0.2259 T23: -0.1960 REMARK 3 L TENSOR REMARK 3 L11: 4.3586 L22: 4.4090 REMARK 3 L33: 3.3286 L12: 3.3643 REMARK 3 L13: -3.6556 L23: -3.3225 REMARK 3 S TENSOR REMARK 3 S11: 0.4892 S12: -2.6400 S13: 0.6214 REMARK 3 S21: 0.0965 S22: 0.1570 S23: 1.4106 REMARK 3 S31: -0.4482 S32: 2.1241 S33: -0.2421 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 269 THROUGH 324 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.3260 8.5418 4.4408 REMARK 3 T TENSOR REMARK 3 T11: 0.3544 T22: 0.4750 REMARK 3 T33: 0.2651 T12: 0.1118 REMARK 3 T13: 0.0196 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 3.1096 L22: 3.8473 REMARK 3 L33: 4.9373 L12: -0.8746 REMARK 3 L13: -1.9673 L23: -0.4107 REMARK 3 S TENSOR REMARK 3 S11: -0.5325 S12: -0.5620 S13: -0.1023 REMARK 3 S21: 0.4018 S22: 0.5846 S23: -0.0066 REMARK 3 S31: 0.1745 S32: 0.0552 S33: -0.1009 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 325 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7696 2.4388 1.5102 REMARK 3 T TENSOR REMARK 3 T11: 0.4313 T22: 0.6912 REMARK 3 T33: 0.4447 T12: 0.1473 REMARK 3 T13: -0.0277 T23: -0.1338 REMARK 3 L TENSOR REMARK 3 L11: 3.9830 L22: 3.2318 REMARK 3 L33: 4.3333 L12: -2.2060 REMARK 3 L13: -0.4590 L23: 0.4446 REMARK 3 S TENSOR REMARK 3 S11: -0.4270 S12: -0.7306 S13: -0.2520 REMARK 3 S21: 0.3654 S22: 0.7901 S23: -0.3156 REMARK 3 S31: 0.3681 S32: 1.0348 S33: -0.2293 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 384 THROUGH 393 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.8516 4.8706 -6.3035 REMARK 3 T TENSOR REMARK 3 T11: 0.5889 T22: 0.8279 REMARK 3 T33: 0.5855 T12: -0.1738 REMARK 3 T13: -0.0955 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 2.7988 L22: 6.5743 REMARK 3 L33: 9.9629 L12: -3.1319 REMARK 3 L13: -3.2028 L23: -0.5708 REMARK 3 S TENSOR REMARK 3 S11: 0.4831 S12: 1.6661 S13: -0.0716 REMARK 3 S21: -0.5191 S22: -0.6684 S23: 0.8302 REMARK 3 S31: 1.1851 S32: -0.8798 S33: 0.2604 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESID 394 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.5382 12.5291 -16.8133 REMARK 3 T TENSOR REMARK 3 T11: 0.6486 T22: 0.5479 REMARK 3 T33: 0.4065 T12: 0.0174 REMARK 3 T13: -0.0454 T23: 0.0492 REMARK 3 L TENSOR REMARK 3 L11: 2.5022 L22: 3.0134 REMARK 3 L33: 7.1230 L12: 1.4768 REMARK 3 L13: -3.3145 L23: -1.0882 REMARK 3 S TENSOR REMARK 3 S11: -0.5073 S12: 1.4309 S13: 0.5627 REMARK 3 S21: -0.6425 S22: 0.4625 S23: 0.2456 REMARK 3 S31: -0.1781 S32: -0.3923 S33: -0.0590 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESID 422 THROUGH 450 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.6067 -3.0873 -3.0584 REMARK 3 T TENSOR REMARK 3 T11: 0.4604 T22: 0.3015 REMARK 3 T33: 0.4888 T12: 0.0066 REMARK 3 T13: 0.0684 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 4.3950 L22: 8.1338 REMARK 3 L33: 7.8270 L12: 3.3492 REMARK 3 L13: -2.8013 L23: -6.2523 REMARK 3 S TENSOR REMARK 3 S11: -0.4028 S12: 0.1135 S13: -0.8211 REMARK 3 S21: -0.2975 S22: 0.3250 S23: 0.2793 REMARK 3 S31: 0.6135 S32: -0.5251 S33: -0.0105 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN A AND (RESID 451 THROUGH 467 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.3137 -1.0246 13.3016 REMARK 3 T TENSOR REMARK 3 T11: 0.8846 T22: 0.5800 REMARK 3 T33: 0.5288 T12: 0.2055 REMARK 3 T13: 0.1494 T23: 0.0844 REMARK 3 L TENSOR REMARK 3 L11: 5.2554 L22: 3.2637 REMARK 3 L33: 7.3311 L12: -1.4340 REMARK 3 L13: 2.0806 L23: -4.7936 REMARK 3 S TENSOR REMARK 3 S11: -0.1417 S12: -0.6951 S13: -0.7962 REMARK 3 S21: 0.7248 S22: -0.2475 S23: 0.6935 REMARK 3 S31: 2.0675 S32: 0.7921 S33: 0.2245 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CI4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1290059167. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.459 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22478 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 44.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4BCR REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG 20000, 0.1 M TRIS-HCL PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.19350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.26300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.26300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.09675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.26300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.26300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 93.29025 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.26300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.26300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.09675 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.26300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.26300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 93.29025 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.19350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 195 REMARK 465 GLU A 196 REMARK 465 ASP A 197 REMARK 465 SER A 198 REMARK 465 GLU A 199 REMARK 465 THR A 200 REMARK 465 ALA A 201 REMARK 465 ASP A 202 REMARK 465 LEU A 203 REMARK 465 GLY A 231 REMARK 465 LYS A 232 REMARK 465 ALA A 233 REMARK 465 SER A 234 REMARK 465 ASN A 235 REMARK 465 ASN A 236 REMARK 465 ALA A 256 REMARK 465 LYS A 257 REMARK 465 LEU A 258 REMARK 465 VAL A 259 REMARK 465 ALA A 260 REMARK 465 ASN A 261 REMARK 465 GLY A 262 REMARK 465 ILE A 263 REMARK 465 GLN A 264 REMARK 465 ASN A 265 REMARK 465 TYR A 468 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 208 CG CD CE NZ REMARK 470 LYS A 224 CD CE NZ REMARK 470 LYS A 252 CD CE NZ REMARK 470 VAL A 255 CG1 CG2 REMARK 470 LYS A 266 CE NZ REMARK 470 GLU A 267 O REMARK 470 LYS A 345 CG CD CE NZ REMARK 470 LYS A 349 CG CD CE NZ REMARK 470 LYS A 399 CE NZ REMARK 470 GLU A 402 OE1 OE2 REMARK 470 LYS A 448 CD CE NZ REMARK 470 LYS A 449 CE NZ REMARK 470 GLU A 451 CG CD OE1 OE2 REMARK 470 SER A 452 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 334 17.75 58.96 REMARK 500 THR A 450 -78.99 -77.52 REMARK 500 ASP A 453 -14.77 80.79 REMARK 500 ALA A 454 70.05 -104.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Y1N A 1468 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CI5 RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR GL479 A DUAL PEROXISOME PROLIFERATOR-ACTIVATED REMARK 900 RECEPTOR GAMMA AGONIST DBREF 4CI4 A 195 468 UNP Q07869 PPARA_HUMAN 195 468 SEQRES 1 A 274 ILE GLU ASP SER GLU THR ALA ASP LEU LYS SER LEU ALA SEQRES 2 A 274 LYS ARG ILE TYR GLU ALA TYR LEU LYS ASN PHE ASN MET SEQRES 3 A 274 ASN LYS VAL LYS ALA ARG VAL ILE LEU SER GLY LYS ALA SEQRES 4 A 274 SER ASN ASN PRO PRO PHE VAL ILE HIS ASP MET GLU THR SEQRES 5 A 274 LEU CYS MET ALA GLU LYS THR LEU VAL ALA LYS LEU VAL SEQRES 6 A 274 ALA ASN GLY ILE GLN ASN LYS GLU ALA GLU VAL ARG ILE SEQRES 7 A 274 PHE HIS CYS CYS GLN CYS THR SER VAL GLU THR VAL THR SEQRES 8 A 274 GLU LEU THR GLU PHE ALA LYS ALA ILE PRO GLY PHE ALA SEQRES 9 A 274 ASN LEU ASP LEU ASN ASP GLN VAL THR LEU LEU LYS TYR SEQRES 10 A 274 GLY VAL TYR GLU ALA ILE PHE ALA MET LEU SER SER VAL SEQRES 11 A 274 MET ASN LYS ASP GLY MET LEU VAL ALA TYR GLY ASN GLY SEQRES 12 A 274 PHE ILE THR ARG GLU PHE LEU LYS SER LEU ARG LYS PRO SEQRES 13 A 274 PHE CYS ASP ILE MET GLU PRO LYS PHE ASP PHE ALA MET SEQRES 14 A 274 LYS PHE ASN ALA LEU GLU LEU ASP ASP SER ASP ILE SER SEQRES 15 A 274 LEU PHE VAL ALA ALA ILE ILE CYS CYS GLY ASP ARG PRO SEQRES 16 A 274 GLY LEU LEU ASN VAL GLY HIS ILE GLU LYS MET GLN GLU SEQRES 17 A 274 GLY ILE VAL HIS VAL LEU ARG LEU HIS LEU GLN SER ASN SEQRES 18 A 274 HIS PRO ASP ASP ILE PHE LEU PHE PRO LYS LEU LEU GLN SEQRES 19 A 274 LYS MET ALA ASP LEU ARG GLN LEU VAL THR GLU HIS ALA SEQRES 20 A 274 GLN LEU VAL GLN ILE ILE LYS LYS THR GLU SER ASP ALA SEQRES 21 A 274 ALA LEU HIS PRO LEU LEU GLN GLU ILE TYR ARG ASP MET SEQRES 22 A 274 TYR HET Y1N A1468 30 HETNAM Y1N 2-METHYL-2-[4-[2-[4-[(E)- HETNAM 2 Y1N PHENYLDIAZENYL]PHENOXY]ETHYL]PHENOXY]PROPANOIC ACID FORMUL 2 Y1N C24 H24 N2 O4 FORMUL 3 HOH *52(H2 O) HELIX 1 1 LYS A 204 PHE A 218 1 15 HELIX 2 2 ASN A 221 LEU A 229 1 9 HELIX 3 3 ASP A 243 LEU A 254 1 12 HELIX 4 4 ALA A 268 ALA A 293 1 26 HELIX 5 5 GLY A 296 LEU A 300 5 5 HELIX 6 6 ASP A 301 SER A 322 1 22 HELIX 7 7 ALA A 333 GLY A 335 5 3 HELIX 8 8 ARG A 341 LEU A 347 1 7 HELIX 9 9 PRO A 350 ILE A 354 5 5 HELIX 10 10 MET A 355 ALA A 367 1 13 HELIX 11 11 ASP A 371 CYS A 384 1 14 HELIX 12 12 ASN A 393 HIS A 416 1 24 HELIX 13 13 PHE A 421 GLU A 451 1 31 HELIX 14 14 HIS A 457 ARG A 465 1 9 SHEET 1 AA 4 PHE A 239 ILE A 241 0 SHEET 2 AA 4 GLY A 337 THR A 340 1 O PHE A 338 N ILE A 241 SHEET 3 AA 4 GLY A 329 VAL A 332 -1 O MET A 330 N ILE A 339 SHEET 4 AA 4 MET A 325 ASN A 326 -1 O ASN A 326 N GLY A 329 CISPEP 1 LYS A 349 PRO A 350 0 -3.33 SITE 1 AC1 14 PHE A 273 CYS A 276 GLN A 277 THR A 279 SITE 2 AC1 14 SER A 280 TYR A 314 PHE A 318 LEU A 321 SITE 3 AC1 14 VAL A 332 MET A 355 HIS A 440 VAL A 444 SITE 4 AC1 14 LEU A 460 TYR A 464 CRYST1 64.526 64.526 124.387 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015498 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015498 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008039 0.00000