HEADER HYDROLASE 06-DEC-13 4CID TITLE STRUCTURAL INSIGHTS INTO THE N-TERMINUS OF THE EHD2 ATPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EH DOMAIN-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.5.5; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSKB2-LNB KEYWDS HYDROLASE, MECHANOCHEMICAL ATPASE, DYNAMIN SUPERFAMILY EXPDTA X-RAY DIFFRACTION AUTHOR C.SHAH,O.DAUMKE REVDAT 3 20-DEC-23 4CID 1 REMARK LINK REVDAT 2 19-MAR-14 4CID 1 JRNL REVDAT 1 19-FEB-14 4CID 0 JRNL AUTH C.SHAH,B.G.HEGDE,B.MOR,E.BEHRMANN,T.MIELKE,G.MOENKE, JRNL AUTH 2 C.M.SPAHN,R.LUNDMARK,O.DAUMKE,R.LANGEN JRNL TITL STRUCTURAL INSIGHTS INTO MEMBRANE INTERACTION AND CAVEOLAR JRNL TITL 2 TARGETING OF DYNAMIN-LIKE EHD2. JRNL REF STRUCTURE V. 22 409 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 24508342 JRNL DOI 10.1016/J.STR.2013.12.015 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 13424 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 699 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 989 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3956 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.10000 REMARK 3 B22 (A**2) : -2.28000 REMARK 3 B33 (A**2) : 1.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.41000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.467 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.429 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 53.277 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4075 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3980 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5507 ; 1.027 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9176 ; 0.718 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 492 ; 5.373 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;34.277 ;23.743 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 688 ;14.120 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;12.595 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 607 ; 0.053 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4477 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 904 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1983 ; 1.674 ; 6.286 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1982 ; 1.674 ; 6.286 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2470 ; 2.935 ; 9.415 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2091 ; 1.795 ; 6.480 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 7 REMARK 3 ORIGIN FOR THE GROUP (A): 32.6932 -43.6332 0.5781 REMARK 3 T TENSOR REMARK 3 T11: 1.0158 T22: 0.5552 REMARK 3 T33: 0.4030 T12: 0.2668 REMARK 3 T13: -0.0172 T23: -0.0650 REMARK 3 L TENSOR REMARK 3 L11: 3.2256 L22: 0.3397 REMARK 3 L33: 3.8355 L12: 0.5907 REMARK 3 L13: 3.2406 L23: 0.9576 REMARK 3 S TENSOR REMARK 3 S11: -0.4543 S12: -0.3779 S13: 0.3454 REMARK 3 S21: 0.3623 S22: 0.1333 S23: 0.0787 REMARK 3 S31: 0.2490 S32: -0.0643 S33: 0.3210 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 114 REMARK 3 RESIDUE RANGE : A 126 A 286 REMARK 3 ORIGIN FOR THE GROUP (A): 17.7646 -52.0214 -9.7448 REMARK 3 T TENSOR REMARK 3 T11: 0.2375 T22: 0.1112 REMARK 3 T33: 0.0785 T12: -0.0187 REMARK 3 T13: 0.0822 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 1.7973 L22: 1.1223 REMARK 3 L33: 0.8830 L12: 0.7272 REMARK 3 L13: 0.4391 L23: 0.0147 REMARK 3 S TENSOR REMARK 3 S11: 0.1330 S12: 0.0225 S13: -0.0467 REMARK 3 S21: 0.3911 S22: -0.0383 S23: -0.0036 REMARK 3 S31: -0.1586 S32: -0.0855 S33: -0.0947 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 56 REMARK 3 RESIDUE RANGE : A 287 A 403 REMARK 3 ORIGIN FOR THE GROUP (A): 33.3236 -26.6832 -16.2083 REMARK 3 T TENSOR REMARK 3 T11: 0.2034 T22: 0.3545 REMARK 3 T33: 0.0511 T12: -0.1041 REMARK 3 T13: 0.0492 T23: 0.0647 REMARK 3 L TENSOR REMARK 3 L11: 1.6338 L22: 2.8917 REMARK 3 L33: 1.5213 L12: -0.3581 REMARK 3 L13: -0.5927 L23: 1.9509 REMARK 3 S TENSOR REMARK 3 S11: -0.2178 S12: 0.0078 S13: -0.2007 REMARK 3 S21: -0.4620 S22: 0.2799 S23: -0.0791 REMARK 3 S31: -0.2603 S32: -0.0058 S33: -0.0621 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 404 A 423 REMARK 3 ORIGIN FOR THE GROUP (A): 30.2159 -68.6141 -15.5103 REMARK 3 T TENSOR REMARK 3 T11: 0.1994 T22: 0.1814 REMARK 3 T33: 0.2143 T12: 0.0060 REMARK 3 T13: 0.0530 T23: -0.0242 REMARK 3 L TENSOR REMARK 3 L11: 4.3625 L22: 11.5995 REMARK 3 L33: 0.4820 L12: 4.7815 REMARK 3 L13: 1.1422 L23: 2.3281 REMARK 3 S TENSOR REMARK 3 S11: -0.2739 S12: 0.2729 S13: 0.4033 REMARK 3 S21: -0.5882 S22: 0.2230 S23: 0.0597 REMARK 3 S31: -0.1135 S32: 0.0525 S33: 0.0509 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 441 A 539 REMARK 3 ORIGIN FOR THE GROUP (A): 0.4948 -85.0038 -43.2722 REMARK 3 T TENSOR REMARK 3 T11: 0.0798 T22: 0.1881 REMARK 3 T33: 0.0493 T12: 0.0120 REMARK 3 T13: 0.0330 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 2.9192 L22: 3.0291 REMARK 3 L33: 3.2481 L12: -0.2270 REMARK 3 L13: 1.4455 L23: 0.6806 REMARK 3 S TENSOR REMARK 3 S11: 0.1697 S12: 0.2729 S13: -0.0093 REMARK 3 S21: -0.0718 S22: -0.1667 S23: -0.1053 REMARK 3 S31: 0.1406 S32: 0.0236 S33: -0.0030 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES HAVE BEEN ADDED WITH TLS. EXPERIMENTAL REMARK 3 (SEMET-DERIVED) PHASES USED FOR REFINEMENT. REMARK 4 REMARK 4 4CID COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1290059096. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979690 REMARK 200 MONOCHROMATOR : DOUBLE SI-111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26426 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 41.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 1.630 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHARP, REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 2QPT REMARK 200 REMARK 200 REMARK: DATA COLLECTION STATISTICS ARE FOR THE ANOMALOUS DATA. REMARK 200 EXPERIMENTAL (SEMET-DERIVED) PHASES DEPOSITED. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES PH 6.5, 20 MM MGCL2, 4% REMARK 280 PEG3350, 5% MPD REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.92550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.32650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.92550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 67.32650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 15.50146 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -53.88251 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -6 REMARK 465 PRO A -5 REMARK 465 HIS A -4 REMARK 465 MSE A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLY A 8 REMARK 465 GLY A 9 REMARK 465 ALA A 10 REMARK 465 ARG A 11 REMARK 465 GLY A 12 REMARK 465 GLN A 13 REMARK 465 ARG A 14 REMARK 465 PRO A 15 REMARK 465 GLU A 16 REMARK 465 VAL A 115 REMARK 465 VAL A 116 REMARK 465 ASP A 117 REMARK 465 PRO A 118 REMARK 465 GLU A 119 REMARK 465 LYS A 120 REMARK 465 PRO A 121 REMARK 465 PHE A 122 REMARK 465 ARG A 123 REMARK 465 LYS A 124 REMARK 465 LEU A 125 REMARK 465 ALA A 161 REMARK 465 LYS A 162 REMARK 465 GLN A 163 REMARK 465 ARG A 164 REMARK 465 VAL A 165 REMARK 465 GLU A 424 REMARK 465 ARG A 425 REMARK 465 GLY A 426 REMARK 465 PRO A 427 REMARK 465 ASP A 428 REMARK 465 GLU A 429 REMARK 465 ALA A 430 REMARK 465 ILE A 431 REMARK 465 GLU A 432 REMARK 465 ASP A 433 REMARK 465 GLY A 434 REMARK 465 GLU A 435 REMARK 465 GLU A 436 REMARK 465 GLY A 437 REMARK 465 SER A 438 REMARK 465 GLU A 439 REMARK 465 ASP A 440 REMARK 465 GLY A 540 REMARK 465 SER A 541 REMARK 465 ALA A 542 REMARK 465 GLU A 543 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 6 98.01 -66.29 REMARK 500 HIS A 46 -63.10 -120.04 REMARK 500 PRO A 92 104.91 -50.36 REMARK 500 THR A 93 -61.63 -97.16 REMARK 500 PRO A 110 -176.47 -65.54 REMARK 500 ASN A 112 3.88 84.82 REMARK 500 PRO A 127 47.97 -88.50 REMARK 500 PHE A 132 75.65 -117.97 REMARK 500 PHE A 136 119.49 -164.45 REMARK 500 TRP A 258 119.50 -169.66 REMARK 500 VAL A 321 -42.12 -137.70 REMARK 500 HIS A 347 73.48 52.32 REMARK 500 SER A 404 89.36 -164.63 REMARK 500 VAL A 405 33.30 -142.71 REMARK 500 GLU A 406 37.06 -98.46 REMARK 500 ALA A 410 -164.83 -74.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 257 TRP A 258 -142.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1541 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 72 OG1 REMARK 620 2 THR A 94 OG1 96.1 REMARK 620 3 ANP A1540 O3G 164.2 90.0 REMARK 620 4 ANP A1540 O2B 80.3 163.6 97.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 494 OD1 REMARK 620 2 ASP A 496 OD1 74.6 REMARK 620 3 ASP A 498 OD1 82.8 81.3 REMARK 620 4 MSE A 500 O 82.9 156.1 88.0 REMARK 620 5 GLU A 505 OE2 71.2 63.5 140.3 116.8 REMARK 620 6 GLU A 505 OE1 113.0 97.2 163.3 99.0 48.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 1540 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1541 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 701 DBREF 4CID A 6 543 UNP Q8BH64 EHD2_MOUSE 6 543 SEQADV 4CID GLY A -6 UNP Q8BH64 EXPRESSION TAG SEQADV 4CID PRO A -5 UNP Q8BH64 EXPRESSION TAG SEQADV 4CID HIS A -4 UNP Q8BH64 EXPRESSION TAG SEQADV 4CID MSE A -3 UNP Q8BH64 EXPRESSION TAG SEQADV 4CID GLY A -2 UNP Q8BH64 EXPRESSION TAG SEQADV 4CID GLY A -1 UNP Q8BH64 EXPRESSION TAG SEQADV 4CID SER A 0 UNP Q8BH64 EXPRESSION TAG SEQADV 4CID MSE A 1 UNP Q8BH64 EXPRESSION TAG SEQADV 4CID PHE A 2 UNP Q8BH64 EXPRESSION TAG SEQADV 4CID SER A 3 UNP Q8BH64 EXPRESSION TAG SEQADV 4CID TRP A 4 UNP Q8BH64 EXPRESSION TAG SEQADV 4CID MSE A 5 UNP Q8BH64 LEU 5 ENGINEERED MUTATION SEQADV 4CID ALA A 410 UNP Q8BH64 GLN 410 ENGINEERED MUTATION SEQRES 1 A 550 GLY PRO HIS MSE GLY GLY SER MSE PHE SER TRP MSE LYS SEQRES 2 A 550 LYS GLY GLY ALA ARG GLY GLN ARG PRO GLU ALA ILE ARG SEQRES 3 A 550 THR VAL THR SER SER LEU LYS GLU LEU TYR ARG THR LYS SEQRES 4 A 550 LEU LEU PRO LEU GLU GLU HIS TYR ARG PHE GLY SER PHE SEQRES 5 A 550 HIS SER PRO ALA LEU GLU ASP ALA ASP PHE ASP GLY LYS SEQRES 6 A 550 PRO MSE VAL LEU VAL ALA GLY GLN TYR SER THR GLY LYS SEQRES 7 A 550 THR SER PHE ILE GLN TYR LEU LEU GLU GLN GLU VAL PRO SEQRES 8 A 550 GLY SER ARG VAL GLY PRO GLU PRO THR THR ASP CYS PHE SEQRES 9 A 550 VAL ALA VAL MSE HIS GLY GLU THR GLU GLY THR VAL PRO SEQRES 10 A 550 GLY ASN ALA LEU VAL VAL ASP PRO GLU LYS PRO PHE ARG SEQRES 11 A 550 LYS LEU ASN PRO PHE GLY ASN THR PHE LEU ASN ARG PHE SEQRES 12 A 550 MSE CYS ALA GLN LEU PRO ASN GLN VAL LEU GLU SER ILE SEQRES 13 A 550 SER ILE ILE ASP THR PRO GLY ILE LEU SER GLY ALA LYS SEQRES 14 A 550 GLN ARG VAL SER ARG GLY TYR ASP PHE PRO ALA VAL LEU SEQRES 15 A 550 ARG TRP PHE ALA GLU ARG VAL ASP LEU ILE ILE LEU LEU SEQRES 16 A 550 PHE ASP ALA HIS LYS LEU GLU ILE SER ASP GLU PHE SER SEQRES 17 A 550 GLU ALA ILE GLY ALA LEU ARG GLY HIS GLU ASP LYS ILE SEQRES 18 A 550 ARG VAL VAL LEU ASN LYS ALA ASP MSE VAL GLU THR GLN SEQRES 19 A 550 GLN LEU MSE ARG VAL TYR GLY ALA LEU MSE TRP ALA LEU SEQRES 20 A 550 GLY LYS VAL VAL GLY THR PRO GLU VAL LEU ARG VAL TYR SEQRES 21 A 550 ILE GLY SER PHE TRP SER GLN PRO LEU LEU VAL PRO ASP SEQRES 22 A 550 ASN ARG ARG LEU PHE GLU LEU GLU GLU GLN ASP LEU PHE SEQRES 23 A 550 ARG ASP ILE GLN GLY LEU PRO ARG HIS ALA ALA LEU ARG SEQRES 24 A 550 LYS LEU ASN ASP LEU VAL LYS ARG ALA ARG LEU VAL ARG SEQRES 25 A 550 VAL HIS ALA TYR ILE ILE SER TYR LEU LYS LYS GLU MSE SEQRES 26 A 550 PRO THR VAL PHE GLY LYS GLU ASN LYS LYS LYS GLN LEU SEQRES 27 A 550 ILE LEU LYS LEU PRO VAL ILE PHE ALA LYS ILE GLN LEU SEQRES 28 A 550 GLU HIS HIS ILE SER PRO GLY ASP PHE PRO ASP CYS GLN SEQRES 29 A 550 LYS MSE GLN GLU LEU LEU MSE ALA HIS ASP PHE THR LYS SEQRES 30 A 550 PHE HIS SER LEU LYS PRO LYS LEU LEU GLU ALA LEU ASP SEQRES 31 A 550 ASP MSE LEU ALA GLN ASP ILE ALA LYS LEU MSE PRO LEU SEQRES 32 A 550 LEU ARG GLN GLU GLU LEU GLU SER VAL GLU ALA GLY VAL SEQRES 33 A 550 ALA GLY GLY ALA PHE GLU GLY THR ARG MSE GLY PRO PHE SEQRES 34 A 550 VAL GLU ARG GLY PRO ASP GLU ALA ILE GLU ASP GLY GLU SEQRES 35 A 550 GLU GLY SER GLU ASP ASP ALA GLU TRP VAL VAL THR LYS SEQRES 36 A 550 ASP LYS SER LYS TYR ASP GLU ILE PHE TYR ASN LEU ALA SEQRES 37 A 550 PRO ALA ASP GLY LYS LEU SER GLY SER LYS ALA LYS THR SEQRES 38 A 550 TRP MSE VAL GLY THR LYS LEU PRO ASN SER VAL LEU GLY SEQRES 39 A 550 ARG ILE TRP LYS LEU SER ASP VAL ASP ARG ASP GLY MSE SEQRES 40 A 550 LEU ASP ASP GLU GLU PHE ALA LEU ALA SER HIS LEU ILE SEQRES 41 A 550 GLU ALA LYS LEU GLU GLY HIS GLY LEU PRO THR ASN LEU SEQRES 42 A 550 PRO ARG ARG LEU VAL PRO PRO SER LYS ARG ARG GLN LYS SEQRES 43 A 550 GLY SER ALA GLU MODRES 4CID MSE A 1 MET SELENOMETHIONINE MODRES 4CID MSE A 5 MET SELENOMETHIONINE MODRES 4CID MSE A 60 MET SELENOMETHIONINE MODRES 4CID MSE A 101 MET SELENOMETHIONINE MODRES 4CID MSE A 137 MET SELENOMETHIONINE MODRES 4CID MSE A 223 MET SELENOMETHIONINE MODRES 4CID MSE A 230 MET SELENOMETHIONINE MODRES 4CID MSE A 237 MET SELENOMETHIONINE MODRES 4CID MSE A 318 MET SELENOMETHIONINE MODRES 4CID MSE A 359 MET SELENOMETHIONINE MODRES 4CID MSE A 364 MET SELENOMETHIONINE MODRES 4CID MSE A 385 MET SELENOMETHIONINE MODRES 4CID MSE A 394 MET SELENOMETHIONINE MODRES 4CID MSE A 419 MET SELENOMETHIONINE MODRES 4CID MSE A 476 MET SELENOMETHIONINE MODRES 4CID MSE A 500 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 5 8 HET MSE A 60 8 HET MSE A 101 8 HET MSE A 137 8 HET MSE A 223 8 HET MSE A 230 8 HET MSE A 237 8 HET MSE A 318 8 HET MSE A 359 8 HET MSE A 364 8 HET MSE A 385 8 HET MSE A 394 8 HET MSE A 419 8 HET MSE A 476 8 HET MSE A 500 8 HET CA A 701 1 HET ANP A1540 31 HET MG A1541 1 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 2 CA CA 2+ FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 MG MG 2+ FORMUL 5 HOH *4(H2 O) HELIX 1 1 THR A 20 LEU A 33 1 14 HELIX 2 2 LEU A 33 TYR A 40 1 8 HELIX 3 3 ARG A 41 PHE A 45 5 5 HELIX 4 4 GLU A 51 GLY A 57 1 7 HELIX 5 5 GLY A 70 GLU A 80 1 11 HELIX 6 6 GLN A 144 SER A 148 5 5 HELIX 7 7 ASP A 170 VAL A 182 1 13 HELIX 8 8 HIS A 192 LEU A 194 5 3 HELIX 9 9 SER A 197 ARG A 208 1 12 HELIX 10 10 HIS A 210 ASP A 212 5 3 HELIX 11 11 GLU A 225 GLY A 245 1 21 HELIX 12 12 ASN A 267 GLY A 284 1 18 HELIX 13 13 HIS A 288 MSE A 318 1 31 HELIX 14 14 GLY A 323 HIS A 347 1 25 HELIX 15 15 SER A 349 PHE A 353 5 5 HELIX 16 16 ASP A 355 ALA A 365 1 11 HELIX 17 17 ASP A 367 PHE A 371 5 5 HELIX 18 18 LYS A 375 GLN A 388 1 14 HELIX 19 19 GLN A 388 SER A 404 1 17 HELIX 20 20 GLU A 415 GLY A 420 5 6 HELIX 21 21 VAL A 446 LEU A 460 1 15 HELIX 22 22 GLY A 469 VAL A 477 1 9 HELIX 23 23 GLY A 478 LYS A 480 5 3 HELIX 24 24 PRO A 482 ASP A 494 1 13 HELIX 25 25 ASP A 503 GLY A 519 1 17 HELIX 26 26 PRO A 527 VAL A 531 5 5 HELIX 27 27 PRO A 532 ARG A 536 5 5 SHEET 1 AA 8 GLY A 107 VAL A 109 0 SHEET 2 AA 8 PHE A 136 LEU A 141 -1 O CYS A 138 N VAL A 109 SHEET 3 AA 8 PHE A 97 HIS A 102 1 O PHE A 97 N MSE A 137 SHEET 4 AA 8 SER A 150 ASP A 153 -1 O ILE A 151 N VAL A 100 SHEET 5 AA 8 MSE A 60 GLY A 65 1 O VAL A 61 N ILE A 152 SHEET 6 AA 8 LEU A 184 ASP A 190 1 O LEU A 184 N LEU A 62 SHEET 7 AA 8 ILE A 214 ASN A 219 1 O ARG A 215 N LEU A 187 SHEET 8 AA 8 VAL A 252 ILE A 254 1 O TYR A 253 N LEU A 218 SHEET 1 AB 2 LYS A 466 SER A 468 0 SHEET 2 AB 2 MSE A 500 ASP A 502 -1 O LEU A 501 N LEU A 467 LINK C MSE A 1 N PHE A 2 1555 1555 1.33 LINK C TRP A 4 N MSE A 5 1555 1555 1.33 LINK C MSE A 5 N LYS A 6 1555 1555 1.33 LINK C PRO A 59 N MSE A 60 1555 1555 1.33 LINK C MSE A 60 N VAL A 61 1555 1555 1.34 LINK C VAL A 100 N MSE A 101 1555 1555 1.33 LINK C MSE A 101 N HIS A 102 1555 1555 1.33 LINK C PHE A 136 N MSE A 137 1555 1555 1.33 LINK C MSE A 137 N CYS A 138 1555 1555 1.33 LINK C ASP A 222 N MSE A 223 1555 1555 1.33 LINK C MSE A 223 N VAL A 224 1555 1555 1.33 LINK C LEU A 229 N MSE A 230 1555 1555 1.33 LINK C MSE A 230 N ARG A 231 1555 1555 1.33 LINK C LEU A 236 N MSE A 237 1555 1555 1.33 LINK C MSE A 237 N TRP A 238 1555 1555 1.33 LINK C GLU A 317 N MSE A 318 1555 1555 1.33 LINK C MSE A 318 N PRO A 319 1555 1555 1.35 LINK C LYS A 358 N MSE A 359 1555 1555 1.33 LINK C MSE A 359 N GLN A 360 1555 1555 1.33 LINK C LEU A 363 N MSE A 364 1555 1555 1.33 LINK C MSE A 364 N ALA A 365 1555 1555 1.33 LINK C ASP A 384 N MSE A 385 1555 1555 1.33 LINK C MSE A 385 N LEU A 386 1555 1555 1.34 LINK C LEU A 393 N MSE A 394 1555 1555 1.33 LINK C MSE A 394 N PRO A 395 1555 1555 1.35 LINK C ARG A 418 N MSE A 419 1555 1555 1.33 LINK C MSE A 419 N GLY A 420 1555 1555 1.33 LINK C TRP A 475 N MSE A 476 1555 1555 1.33 LINK C MSE A 476 N VAL A 477 1555 1555 1.33 LINK C GLY A 499 N MSE A 500 1555 1555 1.33 LINK C MSE A 500 N LEU A 501 1555 1555 1.33 LINK OG1 THR A 72 MG MG A1541 1555 1555 2.12 LINK OG1 THR A 94 MG MG A1541 1555 1555 2.53 LINK OD1 ASP A 494 CA CA A 701 1555 1555 2.63 LINK OD1 ASP A 496 CA CA A 701 1555 1555 2.30 LINK OD1 ASP A 498 CA CA A 701 1555 1555 2.28 LINK O MSE A 500 CA CA A 701 1555 1555 2.20 LINK OE2 GLU A 505 CA CA A 701 1555 1555 2.91 LINK OE1 GLU A 505 CA CA A 701 1555 1555 2.28 LINK O3G ANP A1540 MG MG A1541 1555 1555 1.88 LINK O2B ANP A1540 MG MG A1541 1555 1555 2.20 SITE 1 AC1 20 GLN A 66 TYR A 67 SER A 68 THR A 69 SITE 2 AC1 20 GLY A 70 LYS A 71 THR A 72 SER A 73 SITE 3 AC1 20 VAL A 88 GLY A 89 PRO A 90 PRO A 92 SITE 4 AC1 20 THR A 93 THR A 94 GLY A 156 ASN A 219 SITE 5 AC1 20 LYS A 220 PHE A 257 TRP A 258 MG A1541 SITE 1 AC2 3 THR A 72 THR A 94 ANP A1540 SITE 1 AC3 5 ASP A 494 ASP A 496 ASP A 498 MSE A 500 SITE 2 AC3 5 GLU A 505 CRYST1 99.851 134.653 56.068 90.00 106.05 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010015 0.000000 0.002881 0.00000 SCALE2 0.000000 0.007426 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018559 0.00000 HETATM 1 N MSE A 1 30.354 -34.835 5.747 1.00176.25 N ANISOU 1 N MSE A 1 25182 21319 20465 3801 -1874 -2306 N HETATM 2 CA MSE A 1 29.862 -36.111 5.134 1.00176.55 C ANISOU 2 CA MSE A 1 25260 21466 20354 3609 -1494 -2107 C HETATM 3 C MSE A 1 30.882 -36.616 4.158 1.00171.15 C ANISOU 3 C MSE A 1 24698 20613 19715 3390 -1429 -1781 C HETATM 4 O MSE A 1 31.480 -35.830 3.421 1.00169.77 O ANISOU 4 O MSE A 1 24535 20224 19744 3299 -1698 -1698 O HETATM 5 CB MSE A 1 28.546 -35.894 4.392 1.00183.67 C ANISOU 5 CB MSE A 1 26067 22361 21356 3560 -1520 -2212 C HETATM 6 CG MSE A 1 27.468 -35.335 5.314 1.00192.52 C ANISOU 6 CG MSE A 1 27020 23707 22421 3802 -1609 -2592 C HETATM 7 SE MSE A 1 25.710 -35.333 4.415 1.00203.01 SE ANISOU 7 SE MSE A 1 28210 25112 23813 3738 -1565 -2733 SE HETATM 8 CE MSE A 1 25.581 -33.413 4.002 1.00200.57 C ANISOU 8 CE MSE A 1 27840 24459 23907 3928 -2213 -3016 C