HEADER TRANSCRIPTION 09-DEC-13 4CIH TITLE STRUCTURE OF LNTA-K180D-K181D FROM LISTERIA MONOCYTOGENES COMPND MOL_ID: 1; COMPND 2 MOLECULE: LISTERIA NUCLEAR TARGETED PROTEIN A; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: LNTA; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 STRAIN: LGDE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS TRANSCRIPTION, NUCLEOMODULIN, VIRULENCE FACTOR, BAHD1 BINDING PARTNER EXPDTA X-RAY DIFFRACTION AUTHOR A.LEBRETON,V.JOB,M.RAGON,A.LE MONNIER,A.DESSEN,P.COSSART,H.BIERNE REVDAT 3 20-DEC-23 4CIH 1 REMARK REVDAT 2 27-FEB-19 4CIH 1 JRNL LINK REVDAT 1 05-FEB-14 4CIH 0 JRNL AUTH A.LEBRETON,V.JOB,M.RAGON,A.LE MONNIER,A.DESSEN,P.COSSART, JRNL AUTH 2 H.BIERNE JRNL TITL STRUCTURAL BASIS FOR THE INHIBITION OF THE CHROMATIN JRNL TITL 2 REPRESSOR BAHD1 BY THE BACTERIAL NUCLEOMODULIN LNTA. JRNL REF MBIO V. 5 00775 2014 JRNL REFN ESSN 2150-7511 JRNL PMID 24449750 JRNL DOI 10.1128/MBIO.00775-13 REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 50037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.281 REMARK 3 R VALUE (WORKING SET) : 0.278 REMARK 3 FREE R VALUE : 0.309 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5571 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2096 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 53.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 228 REMARK 3 BIN FREE R VALUE : 0.4310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4760 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 46 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.23000 REMARK 3 B22 (A**2) : 1.23000 REMARK 3 B33 (A**2) : -2.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.054 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.047 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.188 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.994 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.854 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.831 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4820 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6467 ; 2.023 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 581 ; 8.184 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 233 ;36.853 ;25.880 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 973 ;23.622 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;26.328 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 737 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3492 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2336 ; 5.845 ; 4.155 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2913 ; 7.617 ; 6.230 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2484 ; 5.998 ; 4.176 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 56 A 202 4 REMARK 3 1 D 56 D 202 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1188 ; 0.42 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1188 ; 7.17 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 56 B 201 4 REMARK 3 1 C 56 C 201 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 B (A): 1188 ; 0.44 ; 0.50 REMARK 3 MEDIUM THERMAL 2 B (A**2): 1188 ; 6.05 ; 2.00 REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.511 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H, K, -L REMARK 3 TWIN FRACTION : 0.489 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4CIH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1290059139. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 273 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55609 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.220 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.01000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2XL4 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA CITRATE PH 5.0 1M LICL2 21% REMARK 280 PEG3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.22100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 15.11050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.33150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 202 REMARK 465 SER A 203 REMARK 465 GLN A 204 REMARK 465 LYS A 205 REMARK 465 ASP B 202 REMARK 465 SER B 203 REMARK 465 GLN B 204 REMARK 465 LYS B 205 REMARK 465 SER C 203 REMARK 465 GLN C 204 REMARK 465 LYS C 205 REMARK 465 ASP D 202 REMARK 465 SER D 203 REMARK 465 GLN D 204 REMARK 465 LYS D 205 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 127 OE1 GLU B 135 1.79 REMARK 500 O GLY B 197 OE2 GLU C 91 1.80 REMARK 500 O GLU D 166 N PHE D 169 1.98 REMARK 500 O PHE B 141 OG SER B 145 2.04 REMARK 500 O SER B 127 N GLU B 129 2.08 REMARK 500 O LEU B 158 N GLY B 161 2.10 REMARK 500 N GLY B 197 O ILE C 89 2.10 REMARK 500 N SER A 60 OD2 ASP A 63 2.12 REMARK 500 O ASP A 157 N ASN A 160 2.18 REMARK 500 N SER B 128 OE1 GLU B 135 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 64 CA - CB - CG ANGL. DEV. = 23.7 DEGREES REMARK 500 ARG B 56 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 MSE C 107 CA - CB - CG ANGL. DEV. = -10.2 DEGREES REMARK 500 PRO D 57 C - N - CA ANGL. DEV. = 10.8 DEGREES REMARK 500 LEU D 97 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 66 -75.77 -37.37 REMARK 500 GLU A 91 80.58 73.47 REMARK 500 LEU A 119 -13.58 -44.65 REMARK 500 SER A 127 -50.16 -17.34 REMARK 500 LEU A 159 -4.77 -58.91 REMARK 500 ASP A 180 -86.91 -35.94 REMARK 500 ASP A 181 -70.95 -25.41 REMARK 500 ALA A 190 -35.16 -39.54 REMARK 500 LYS A 195 36.09 77.83 REMARK 500 GLU A 199 99.26 -65.16 REMARK 500 LEU A 200 -179.41 -52.03 REMARK 500 SER B 60 -149.98 -84.77 REMARK 500 ALA B 65 -76.58 -53.88 REMARK 500 LEU B 66 -50.03 -24.23 REMARK 500 GLU B 91 36.45 76.37 REMARK 500 SER B 95 58.92 -95.72 REMARK 500 ARG B 113 -76.90 -24.20 REMARK 500 ASP B 122 -59.70 -18.41 REMARK 500 SER B 127 -86.79 2.79 REMARK 500 SER B 128 1.59 -38.22 REMARK 500 GLU B 129 -90.60 -119.71 REMARK 500 ALA B 130 -175.49 -10.54 REMARK 500 SER B 145 -70.34 -37.80 REMARK 500 GLU B 146 -45.10 -26.81 REMARK 500 ASP B 180 -85.93 -67.85 REMARK 500 ASP B 181 -41.76 -28.43 REMARK 500 ALA B 190 -73.90 -48.83 REMARK 500 LEU B 191 -35.12 -29.13 REMARK 500 THR C 61 -49.93 -10.70 REMARK 500 ASP C 96 -176.47 -66.45 REMARK 500 ARG C 126 50.56 -102.20 REMARK 500 GLU C 129 66.89 -114.93 REMARK 500 PHE C 141 -4.84 -57.71 REMARK 500 PRO D 57 106.32 -40.78 REMARK 500 SER D 60 -156.00 -62.76 REMARK 500 GLU D 91 76.01 44.72 REMARK 500 SER D 93 -29.49 -28.93 REMARK 500 ASP D 102 -39.37 -36.06 REMARK 500 ILE D 108 -62.32 -27.35 REMARK 500 ARG D 113 -51.19 -26.55 REMARK 500 ILE D 121 94.16 -53.87 REMARK 500 ASP D 122 -47.28 -19.31 REMARK 500 GLU D 129 46.85 -107.54 REMARK 500 LYS D 138 -71.33 -45.25 REMARK 500 GLU D 166 -73.83 -63.44 REMARK 500 ALA D 167 -59.62 -21.92 REMARK 500 TYR D 173 74.88 -119.20 REMARK 500 ASN D 175 68.82 -111.12 REMARK 500 GLN D 176 -81.88 -39.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 65 LEU A 66 140.07 REMARK 500 REMARK 500 REMARK: NULL DBREF 4CIH A 56 205 UNP Q8Y9T5 LNTA_LISMO 56 205 DBREF 4CIH B 56 205 UNP Q8Y9T5 LNTA_LISMO 56 205 DBREF 4CIH C 56 205 UNP Q8Y9T5 LNTA_LISMO 56 205 DBREF 4CIH D 56 205 UNP Q8Y9T5 LNTA_LISMO 56 205 SEQADV 4CIH ASP A 180 UNP Q8Y9T5 LYS 180 ENGINEERED MUTATION SEQADV 4CIH ASP A 181 UNP Q8Y9T5 LYS 181 ENGINEERED MUTATION SEQADV 4CIH ASP B 180 UNP Q8Y9T5 LYS 180 ENGINEERED MUTATION SEQADV 4CIH ASP B 181 UNP Q8Y9T5 LYS 181 ENGINEERED MUTATION SEQADV 4CIH ASP C 180 UNP Q8Y9T5 LYS 180 ENGINEERED MUTATION SEQADV 4CIH ASP C 181 UNP Q8Y9T5 LYS 181 ENGINEERED MUTATION SEQADV 4CIH ASP D 180 UNP Q8Y9T5 LYS 180 ENGINEERED MUTATION SEQADV 4CIH ASP D 181 UNP Q8Y9T5 LYS 181 ENGINEERED MUTATION SEQRES 1 A 150 ARG PRO LYS LEU SER THR LYS ASP LEU ALA LEU ILE LYS SEQRES 2 A 150 ALA ASP LEU ALA GLU PHE GLU ALA ARG GLU LEU SER SER SEQRES 3 A 150 GLU LYS ILE LEU LYS ASP THR ILE LYS GLU GLU SER TRP SEQRES 4 A 150 SER ASP LEU ASP PHE ALA ASN ASP ASN ILE ASN GLN MSE SEQRES 5 A 150 ILE GLY THR MSE LYS ARG TYR GLN GLN GLU ILE LEU SER SEQRES 6 A 150 ILE ASP ALA ILE LYS ARG SER SER GLU ALA SER ALA ASP SEQRES 7 A 150 THR GLU ALA PHE LYS LYS ILE PHE LYS GLU TRP SER GLU SEQRES 8 A 150 PHE LYS ILE GLU ARG ILE GLN VAL THR ILE ASP LEU LEU SEQRES 9 A 150 ASN GLY LYS LYS ASP SER GLU ALA VAL PHE LYS LYS THR SEQRES 10 A 150 TYR PRO ASN GLN ILE ILE PHE ASP ASP VAL ARG THR ASN SEQRES 11 A 150 LYS LEU GLN THR ALA LEU ASN ASN LEU LYS VAL GLY TYR SEQRES 12 A 150 GLU LEU LEU ASP SER GLN LYS SEQRES 1 B 150 ARG PRO LYS LEU SER THR LYS ASP LEU ALA LEU ILE LYS SEQRES 2 B 150 ALA ASP LEU ALA GLU PHE GLU ALA ARG GLU LEU SER SER SEQRES 3 B 150 GLU LYS ILE LEU LYS ASP THR ILE LYS GLU GLU SER TRP SEQRES 4 B 150 SER ASP LEU ASP PHE ALA ASN ASP ASN ILE ASN GLN MSE SEQRES 5 B 150 ILE GLY THR MSE LYS ARG TYR GLN GLN GLU ILE LEU SER SEQRES 6 B 150 ILE ASP ALA ILE LYS ARG SER SER GLU ALA SER ALA ASP SEQRES 7 B 150 THR GLU ALA PHE LYS LYS ILE PHE LYS GLU TRP SER GLU SEQRES 8 B 150 PHE LYS ILE GLU ARG ILE GLN VAL THR ILE ASP LEU LEU SEQRES 9 B 150 ASN GLY LYS LYS ASP SER GLU ALA VAL PHE LYS LYS THR SEQRES 10 B 150 TYR PRO ASN GLN ILE ILE PHE ASP ASP VAL ARG THR ASN SEQRES 11 B 150 LYS LEU GLN THR ALA LEU ASN ASN LEU LYS VAL GLY TYR SEQRES 12 B 150 GLU LEU LEU ASP SER GLN LYS SEQRES 1 C 150 ARG PRO LYS LEU SER THR LYS ASP LEU ALA LEU ILE LYS SEQRES 2 C 150 ALA ASP LEU ALA GLU PHE GLU ALA ARG GLU LEU SER SER SEQRES 3 C 150 GLU LYS ILE LEU LYS ASP THR ILE LYS GLU GLU SER TRP SEQRES 4 C 150 SER ASP LEU ASP PHE ALA ASN ASP ASN ILE ASN GLN MSE SEQRES 5 C 150 ILE GLY THR MSE LYS ARG TYR GLN GLN GLU ILE LEU SER SEQRES 6 C 150 ILE ASP ALA ILE LYS ARG SER SER GLU ALA SER ALA ASP SEQRES 7 C 150 THR GLU ALA PHE LYS LYS ILE PHE LYS GLU TRP SER GLU SEQRES 8 C 150 PHE LYS ILE GLU ARG ILE GLN VAL THR ILE ASP LEU LEU SEQRES 9 C 150 ASN GLY LYS LYS ASP SER GLU ALA VAL PHE LYS LYS THR SEQRES 10 C 150 TYR PRO ASN GLN ILE ILE PHE ASP ASP VAL ARG THR ASN SEQRES 11 C 150 LYS LEU GLN THR ALA LEU ASN ASN LEU LYS VAL GLY TYR SEQRES 12 C 150 GLU LEU LEU ASP SER GLN LYS SEQRES 1 D 150 ARG PRO LYS LEU SER THR LYS ASP LEU ALA LEU ILE LYS SEQRES 2 D 150 ALA ASP LEU ALA GLU PHE GLU ALA ARG GLU LEU SER SER SEQRES 3 D 150 GLU LYS ILE LEU LYS ASP THR ILE LYS GLU GLU SER TRP SEQRES 4 D 150 SER ASP LEU ASP PHE ALA ASN ASP ASN ILE ASN GLN MSE SEQRES 5 D 150 ILE GLY THR MSE LYS ARG TYR GLN GLN GLU ILE LEU SER SEQRES 6 D 150 ILE ASP ALA ILE LYS ARG SER SER GLU ALA SER ALA ASP SEQRES 7 D 150 THR GLU ALA PHE LYS LYS ILE PHE LYS GLU TRP SER GLU SEQRES 8 D 150 PHE LYS ILE GLU ARG ILE GLN VAL THR ILE ASP LEU LEU SEQRES 9 D 150 ASN GLY LYS LYS ASP SER GLU ALA VAL PHE LYS LYS THR SEQRES 10 D 150 TYR PRO ASN GLN ILE ILE PHE ASP ASP VAL ARG THR ASN SEQRES 11 D 150 LYS LEU GLN THR ALA LEU ASN ASN LEU LYS VAL GLY TYR SEQRES 12 D 150 GLU LEU LEU ASP SER GLN LYS MODRES 4CIH MSE A 107 MET SELENOMETHIONINE MODRES 4CIH MSE A 111 MET SELENOMETHIONINE MODRES 4CIH MSE B 107 MET SELENOMETHIONINE MODRES 4CIH MSE B 111 MET SELENOMETHIONINE MODRES 4CIH MSE C 107 MET SELENOMETHIONINE MODRES 4CIH MSE C 111 MET SELENOMETHIONINE MODRES 4CIH MSE D 107 MET SELENOMETHIONINE MODRES 4CIH MSE D 111 MET SELENOMETHIONINE HET MSE A 107 8 HET MSE A 111 8 HET MSE B 107 8 HET MSE B 111 8 HET MSE C 107 8 HET MSE C 111 8 HET MSE D 107 8 HET MSE D 111 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 5 HOH *46(H2 O) HELIX 1 1 LYS A 62 LYS A 90 1 29 HELIX 2 2 ASP A 96 LEU A 119 1 24 HELIX 3 3 ILE A 121 ARG A 126 1 6 HELIX 4 4 SER A 127 ALA A 130 5 4 HELIX 5 5 SER A 131 LEU A 159 1 29 HELIX 6 6 LYS A 163 TYR A 173 1 11 HELIX 7 7 ASN A 175 LYS A 195 1 21 HELIX 8 8 SER B 60 GLU B 91 1 32 HELIX 9 9 ASP B 96 SER B 120 1 25 HELIX 10 10 ILE B 121 ARG B 126 1 6 HELIX 11 11 SER B 131 ASN B 160 1 30 HELIX 12 12 LYS B 163 TYR B 173 1 11 HELIX 13 13 ASN B 175 LEU B 194 1 20 HELIX 14 14 SER C 60 GLU C 91 1 32 HELIX 15 15 ASP C 96 SER C 120 1 25 HELIX 16 16 ILE C 121 ARG C 126 1 6 HELIX 17 17 SER C 131 ASN C 160 1 30 HELIX 18 18 ASP C 164 TYR C 173 1 10 HELIX 19 19 ASN C 175 LEU C 194 1 20 HELIX 20 20 THR D 61 LYS D 90 1 30 HELIX 21 21 ASP D 96 LEU D 119 1 24 HELIX 22 22 ILE D 121 ARG D 126 1 6 HELIX 23 23 SER D 127 ALA D 130 5 4 HELIX 24 24 SER D 131 LEU D 159 1 29 HELIX 25 25 LYS D 163 TYR D 173 1 11 HELIX 26 26 ASN D 175 LEU D 194 1 20 LINK C GLN A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N ILE A 108 1555 1555 1.33 LINK C THR A 110 N MSE A 111 1555 1555 1.33 LINK C MSE A 111 N LYS A 112 1555 1555 1.33 LINK C GLN B 106 N MSE B 107 1555 1555 1.33 LINK C MSE B 107 N ILE B 108 1555 1555 1.32 LINK C THR B 110 N MSE B 111 1555 1555 1.33 LINK C MSE B 111 N LYS B 112 1555 1555 1.33 LINK C GLN C 106 N MSE C 107 1555 1555 1.33 LINK C MSE C 107 N ILE C 108 1555 1555 1.33 LINK C THR C 110 N MSE C 111 1555 1555 1.32 LINK C MSE C 111 N LYS C 112 1555 1555 1.34 LINK C GLN D 106 N MSE D 107 1555 1555 1.33 LINK C MSE D 107 N ILE D 108 1555 1555 1.32 LINK C THR D 110 N MSE D 111 1555 1555 1.33 LINK C MSE D 111 N LYS D 112 1555 1555 1.33 CRYST1 141.188 141.188 60.442 90.00 90.00 90.00 P 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007083 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007083 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016545 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.019025 0.091733 -0.995602 16.11666 1 MTRIX2 2 -0.074785 0.993123 0.090076 -31.44794 1 MTRIX3 2 0.997018 0.072742 0.025755 -54.23512 1 MTRIX1 3 0.995248 -0.058461 -0.077875 -31.36496 1 MTRIX2 3 0.077811 -0.003368 0.996962 125.49979 1 MTRIX3 3 -0.058546 -0.998284 0.001197 88.85644 1