HEADER ISOMERASE 10-DEC-13 4CIJ TITLE STRUCTURE OF ROLLING CIRCLE REPLICATION INITIATOR PROTEIN TITLE 2 FROM GEOBACILLUS STEAROTHERMOPHILUS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GST REP; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: DNA RELAXASE DOMAIN, RESIDUES 2-271; COMPND 5 EC: 5.99.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 STRAIN: TK015; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 37762; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET-15M; SOURCE 11 OTHER_DETAILS: NARUMI ET AL. BIOTECH LETT 15, 815-820 KEYWDS ISOMERASE, CELL CYCLE, ROLLING CIRCLE REPLICATION, ANTIBIOTIC KEYWDS 2 RESISTANCE, TYPE I TOPOISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.B.CARR,S.E.V.PHILLIPS,C.D.THOMAS REVDAT 3 30-MAR-16 4CIJ 1 JRNL REVDAT 2 03-FEB-16 4CIJ 1 JRNL REVDAT 1 24-DEC-14 4CIJ 0 JRNL AUTH S.B.CARR,S.E.PHILLIPS,C.D.THOMAS JRNL TITL STRUCTURES OF REPLICATION INITIATION PROTEINS FROM JRNL TITL 2 STAPHYLOCOCCAL ANTIBIOTIC RESISTANCE PLASMIDS REVEAL JRNL TITL 3 PROTEIN ASYMMETRY AND FLEXIBILITY ARE NECESSARY FOR JRNL TITL 4 REPLICATION. JRNL REF NUCLEIC ACIDS RES. V. 44 2417 2016 JRNL REFN ISSN 0305-1048 JRNL PMID 26792891 JRNL DOI 10.1093/NAR/GKV1539 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.63 REMARK 3 NUMBER OF REFLECTIONS : 57652 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.19503 REMARK 3 R VALUE (WORKING SET) : 0.19296 REMARK 3 FREE R VALUE : 0.23457 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 3077 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.300 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.360 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4160 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.275 REMARK 3 BIN FREE R VALUE SET COUNT : 246 REMARK 3 BIN FREE R VALUE : 0.302 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8720 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 219 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.222 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13 REMARK 3 B22 (A**2) : 1.35 REMARK 3 B33 (A**2) : -1.22 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.289 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.216 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.161 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.812 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8910 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 8638 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12026 ; 1.543 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 19806 ; 1.271 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1064 ; 6.173 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 446 ;34.542 ;24.036 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1616 ;16.525 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 60 ;18.351 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1300 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10036 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2148 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 1742 ; 0.23 ; 0.2 REMARK 3 SYMMETRY VDW OTHERS (A): 7539 ; 0.234 ; 0.2 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 148 ; 0.137 ; 0.2 REMARK 3 SYMMETRY H-BOND OTHERS (A): 4 ; 0.041 ; 0.2 REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4268 ; 4.764 ; 6.374 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4267 ; 4.761 ; 6.372 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5328 ; 6.787 ; 9.547 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4642 ; 5.701 ; 6.906 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 6698 ; 8.471 ;10.107 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 267 REMARK 3 ORIGIN FOR THE GROUP (A): 47.4985 36.0891 41.2757 REMARK 3 T TENSOR REMARK 3 T11: 0.1775 T22: 0.0345 REMARK 3 T33: 0.0540 T12: -0.0222 REMARK 3 T13: -0.0303 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 0.4121 L22: 0.7743 REMARK 3 L33: 0.7678 L12: -0.3280 REMARK 3 L13: 0.3796 L23: 0.0898 REMARK 3 S TENSOR REMARK 3 S11: -0.0038 S12: 0.0562 S13: 0.0031 REMARK 3 S21: 0.1629 S22: 0.0045 S23: -0.0193 REMARK 3 S31: -0.0064 S32: 0.1034 S33: -0.0007 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 267 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4907 18.7168 78.7311 REMARK 3 T TENSOR REMARK 3 T11: 0.2120 T22: 0.0188 REMARK 3 T33: 0.0420 T12: 0.0023 REMARK 3 T13: 0.0178 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.6800 L22: 0.7279 REMARK 3 L33: 0.2776 L12: -0.3078 REMARK 3 L13: -0.2013 L23: 0.1782 REMARK 3 S TENSOR REMARK 3 S11: -0.0275 S12: -0.0286 S13: 0.0292 REMARK 3 S21: -0.0938 S22: 0.0873 S23: -0.0524 REMARK 3 S31: -0.1509 S32: -0.0135 S33: -0.0598 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 267 REMARK 3 ORIGIN FOR THE GROUP (A): 23.8146 21.2074 25.7119 REMARK 3 T TENSOR REMARK 3 T11: 0.1396 T22: 0.0644 REMARK 3 T33: 0.1878 T12: -0.0636 REMARK 3 T13: -0.0693 T23: 0.0438 REMARK 3 L TENSOR REMARK 3 L11: 1.0484 L22: 0.5618 REMARK 3 L33: 0.8253 L12: -0.6089 REMARK 3 L13: 0.3605 L23: -0.0477 REMARK 3 S TENSOR REMARK 3 S11: 0.2218 S12: -0.0244 S13: -0.2378 REMARK 3 S21: -0.0172 S22: -0.0496 S23: 0.2083 REMARK 3 S31: 0.1894 S32: -0.2009 S33: -0.1722 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D -1 D 266 REMARK 3 ORIGIN FOR THE GROUP (A): 21.7049 -12.2989 68.9060 REMARK 3 T TENSOR REMARK 3 T11: 0.1288 T22: 0.0545 REMARK 3 T33: 0.1169 T12: -0.0230 REMARK 3 T13: 0.0601 T23: -0.0627 REMARK 3 L TENSOR REMARK 3 L11: 1.1384 L22: 0.6278 REMARK 3 L33: 0.1946 L12: -0.1104 REMARK 3 L13: 0.1473 L23: 0.2161 REMARK 3 S TENSOR REMARK 3 S11: -0.0588 S12: 0.0760 S13: -0.2407 REMARK 3 S21: 0.0205 S22: 0.0380 S23: 0.0083 REMARK 3 S31: -0.0251 S32: -0.0297 S33: 0.0208 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 4CIJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-DEC-13. REMARK 100 THE PDBE ID CODE IS EBI-59190. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9163 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 2M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60795 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.30 REMARK 200 RESOLUTION RANGE LOW (A) : 40.20 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.0 REMARK 200 R MERGE (I) : 0.05 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.90 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.1 REMARK 200 R MERGE FOR SHELL (I) : 0.86 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.3 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M PROLINE, 0.1 M HEPES PH REMARK 280 7.5, 10 % (V/V) PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.05550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.57850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 68.42400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.57850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.05550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 68.42400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 PRO A 268 REMARK 465 LYS A 269 REMARK 465 SER B -1 REMARK 465 PRO B 268 REMARK 465 LYS B 269 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 PRO C 268 REMARK 465 LYS C 269 REMARK 465 MET D 267 REMARK 465 PRO D 268 REMARK 465 LYS D 269 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN D 60 O HOH D 2015 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 87 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 148 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 87 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG C 87 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG C 87 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG D 87 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG D 87 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG D 194 CG - CD - NE ANGL. DEV. = 15.2 DEGREES REMARK 500 ARG D 194 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 51 -147.77 58.39 REMARK 500 ILE A 95 -155.54 -119.11 REMARK 500 ASP A 188 61.86 -105.45 REMARK 500 ASP A 201 -125.57 53.12 REMARK 500 TRP B 10 143.03 -171.30 REMARK 500 ILE B 95 -156.91 -117.40 REMARK 500 ASP B 201 -124.51 50.76 REMARK 500 ILE C 95 -159.46 -119.64 REMARK 500 ASP C 188 71.59 -107.88 REMARK 500 ASP C 201 -126.84 50.37 REMARK 500 ILE D 95 -169.42 -115.19 REMARK 500 ASP D 201 -125.47 51.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 PROTEIN CORRESPONDS TO TRANSLATION OF NUCLEOTIDES 794-1597 REMARK 999 OF D29979 DBREF 4CIJ A 2 269 PDB 4CIJ 4CIJ 2 269 DBREF 4CIJ B 2 269 PDB 4CIJ 4CIJ 2 269 DBREF 4CIJ C 2 269 PDB 4CIJ 4CIJ 2 269 DBREF 4CIJ D 2 269 PDB 4CIJ 4CIJ 2 269 SEQADV 4CIJ SER A -1 PDB 4CIJ EXPRESSION TAG SEQADV 4CIJ HIS A 0 PDB 4CIJ EXPRESSION TAG SEQADV 4CIJ MET A 1 PDB 4CIJ EXPRESSION TAG SEQADV 4CIJ SER B -1 PDB 4CIJ EXPRESSION TAG SEQADV 4CIJ HIS B 0 PDB 4CIJ EXPRESSION TAG SEQADV 4CIJ MET B 1 PDB 4CIJ EXPRESSION TAG SEQADV 4CIJ SER C -1 PDB 4CIJ EXPRESSION TAG SEQADV 4CIJ HIS C 0 PDB 4CIJ EXPRESSION TAG SEQADV 4CIJ MET C 1 PDB 4CIJ EXPRESSION TAG SEQADV 4CIJ SER D -1 PDB 4CIJ EXPRESSION TAG SEQADV 4CIJ HIS D 0 PDB 4CIJ EXPRESSION TAG SEQADV 4CIJ MET D 1 PDB 4CIJ EXPRESSION TAG SEQRES 1 A 271 SER HIS MET SER GLY LEU LYS PRO CYS VAL ASP TRP LEU SEQRES 2 A 271 GLN VAL THR PHE LYS THR GLY GLN ASP SER VAL LYS LYS SEQRES 3 A 271 CYS VAL GLU LYS LEU GLU LYS VAL PHE GLU ILE LEU GLY SEQRES 4 A 271 LEU ASN GLU ALA GLU PHE LEU PRO LEU LYS ASN GLY LYS SEQRES 5 A 271 TYR GLY TYR LYS GLN GLY VAL ALA PHE GLN GLY ASN PRO SEQRES 6 A 271 VAL LEU ALA VAL TYR TYR ASP GLY ALA ASP ASP MET GLY SEQRES 7 A 271 ILE HIS VAL GLU MET THR GLY GLN GLY CYS ARG LEU PHE SEQRES 8 A 271 GLU LEU HIS THR SER ILE ASN TRP TYR GLU LEU PHE TYR SEQRES 9 A 271 ARG LEU VAL TYR GLU TYR GLU VAL ASN ILE THR ARG LEU SEQRES 10 A 271 ASP VAL ALA VAL ASP ASP PHE LYS GLY TYR PHE LYS ILE SEQRES 11 A 271 ASN THR LEU VAL LYS LYS LEU LYS ASP ASP GLU VAL THR SEQRES 12 A 271 SER ARG PHE LYS LYS ALA ARG HIS ILE GLU ASN ILE VAL SEQRES 13 A 271 ILE GLU GLY GLY GLU THR ILE GLY HIS THR LEU TYR PHE SEQRES 14 A 271 GLY ALA PRO SER SER ASP ILE GLN VAL ARG PHE TYR GLU SEQRES 15 A 271 LYS ASN VAL GLN MET GLY MET ASP ILE ASP VAL TRP ASN SEQRES 16 A 271 ARG THR GLU ILE GLN LEU ARG ASP ASP ARG ALA HIS VAL SEQRES 17 A 271 VAL ALA GLN ILE ILE ALA ASP ASP VAL LEU PRO LEU GLY SEQRES 18 A 271 GLU ILE VAL ALA GLY LEU LEU ARG ASN TYR ILE GLN PHE SEQRES 19 A 271 ARG THR ARG LYS ALA THR ASP LYS ASN LYS LYS ARG TRP SEQRES 20 A 271 PRO LEU ALA ARG PHE TRP LEU ASN PHE LEU GLY ASP VAL SEQRES 21 A 271 GLN PRO LEU ARG ILE ALA LYS GLN MET PRO LYS SEQRES 1 B 271 SER HIS MET SER GLY LEU LYS PRO CYS VAL ASP TRP LEU SEQRES 2 B 271 GLN VAL THR PHE LYS THR GLY GLN ASP SER VAL LYS LYS SEQRES 3 B 271 CYS VAL GLU LYS LEU GLU LYS VAL PHE GLU ILE LEU GLY SEQRES 4 B 271 LEU ASN GLU ALA GLU PHE LEU PRO LEU LYS ASN GLY LYS SEQRES 5 B 271 TYR GLY TYR LYS GLN GLY VAL ALA PHE GLN GLY ASN PRO SEQRES 6 B 271 VAL LEU ALA VAL TYR TYR ASP GLY ALA ASP ASP MET GLY SEQRES 7 B 271 ILE HIS VAL GLU MET THR GLY GLN GLY CYS ARG LEU PHE SEQRES 8 B 271 GLU LEU HIS THR SER ILE ASN TRP TYR GLU LEU PHE TYR SEQRES 9 B 271 ARG LEU VAL TYR GLU TYR GLU VAL ASN ILE THR ARG LEU SEQRES 10 B 271 ASP VAL ALA VAL ASP ASP PHE LYS GLY TYR PHE LYS ILE SEQRES 11 B 271 ASN THR LEU VAL LYS LYS LEU LYS ASP ASP GLU VAL THR SEQRES 12 B 271 SER ARG PHE LYS LYS ALA ARG HIS ILE GLU ASN ILE VAL SEQRES 13 B 271 ILE GLU GLY GLY GLU THR ILE GLY HIS THR LEU TYR PHE SEQRES 14 B 271 GLY ALA PRO SER SER ASP ILE GLN VAL ARG PHE TYR GLU SEQRES 15 B 271 LYS ASN VAL GLN MET GLY MET ASP ILE ASP VAL TRP ASN SEQRES 16 B 271 ARG THR GLU ILE GLN LEU ARG ASP ASP ARG ALA HIS VAL SEQRES 17 B 271 VAL ALA GLN ILE ILE ALA ASP ASP VAL LEU PRO LEU GLY SEQRES 18 B 271 GLU ILE VAL ALA GLY LEU LEU ARG ASN TYR ILE GLN PHE SEQRES 19 B 271 ARG THR ARG LYS ALA THR ASP LYS ASN LYS LYS ARG TRP SEQRES 20 B 271 PRO LEU ALA ARG PHE TRP LEU ASN PHE LEU GLY ASP VAL SEQRES 21 B 271 GLN PRO LEU ARG ILE ALA LYS GLN MET PRO LYS SEQRES 1 C 271 SER HIS MET SER GLY LEU LYS PRO CYS VAL ASP TRP LEU SEQRES 2 C 271 GLN VAL THR PHE LYS THR GLY GLN ASP SER VAL LYS LYS SEQRES 3 C 271 CYS VAL GLU LYS LEU GLU LYS VAL PHE GLU ILE LEU GLY SEQRES 4 C 271 LEU ASN GLU ALA GLU PHE LEU PRO LEU LYS ASN GLY LYS SEQRES 5 C 271 TYR GLY TYR LYS GLN GLY VAL ALA PHE GLN GLY ASN PRO SEQRES 6 C 271 VAL LEU ALA VAL TYR TYR ASP GLY ALA ASP ASP MET GLY SEQRES 7 C 271 ILE HIS VAL GLU MET THR GLY GLN GLY CYS ARG LEU PHE SEQRES 8 C 271 GLU LEU HIS THR SER ILE ASN TRP TYR GLU LEU PHE TYR SEQRES 9 C 271 ARG LEU VAL TYR GLU TYR GLU VAL ASN ILE THR ARG LEU SEQRES 10 C 271 ASP VAL ALA VAL ASP ASP PHE LYS GLY TYR PHE LYS ILE SEQRES 11 C 271 ASN THR LEU VAL LYS LYS LEU LYS ASP ASP GLU VAL THR SEQRES 12 C 271 SER ARG PHE LYS LYS ALA ARG HIS ILE GLU ASN ILE VAL SEQRES 13 C 271 ILE GLU GLY GLY GLU THR ILE GLY HIS THR LEU TYR PHE SEQRES 14 C 271 GLY ALA PRO SER SER ASP ILE GLN VAL ARG PHE TYR GLU SEQRES 15 C 271 LYS ASN VAL GLN MET GLY MET ASP ILE ASP VAL TRP ASN SEQRES 16 C 271 ARG THR GLU ILE GLN LEU ARG ASP ASP ARG ALA HIS VAL SEQRES 17 C 271 VAL ALA GLN ILE ILE ALA ASP ASP VAL LEU PRO LEU GLY SEQRES 18 C 271 GLU ILE VAL ALA GLY LEU LEU ARG ASN TYR ILE GLN PHE SEQRES 19 C 271 ARG THR ARG LYS ALA THR ASP LYS ASN LYS LYS ARG TRP SEQRES 20 C 271 PRO LEU ALA ARG PHE TRP LEU ASN PHE LEU GLY ASP VAL SEQRES 21 C 271 GLN PRO LEU ARG ILE ALA LYS GLN MET PRO LYS SEQRES 1 D 271 SER HIS MET SER GLY LEU LYS PRO CYS VAL ASP TRP LEU SEQRES 2 D 271 GLN VAL THR PHE LYS THR GLY GLN ASP SER VAL LYS LYS SEQRES 3 D 271 CYS VAL GLU LYS LEU GLU LYS VAL PHE GLU ILE LEU GLY SEQRES 4 D 271 LEU ASN GLU ALA GLU PHE LEU PRO LEU LYS ASN GLY LYS SEQRES 5 D 271 TYR GLY TYR LYS GLN GLY VAL ALA PHE GLN GLY ASN PRO SEQRES 6 D 271 VAL LEU ALA VAL TYR TYR ASP GLY ALA ASP ASP MET GLY SEQRES 7 D 271 ILE HIS VAL GLU MET THR GLY GLN GLY CYS ARG LEU PHE SEQRES 8 D 271 GLU LEU HIS THR SER ILE ASN TRP TYR GLU LEU PHE TYR SEQRES 9 D 271 ARG LEU VAL TYR GLU TYR GLU VAL ASN ILE THR ARG LEU SEQRES 10 D 271 ASP VAL ALA VAL ASP ASP PHE LYS GLY TYR PHE LYS ILE SEQRES 11 D 271 ASN THR LEU VAL LYS LYS LEU LYS ASP ASP GLU VAL THR SEQRES 12 D 271 SER ARG PHE LYS LYS ALA ARG HIS ILE GLU ASN ILE VAL SEQRES 13 D 271 ILE GLU GLY GLY GLU THR ILE GLY HIS THR LEU TYR PHE SEQRES 14 D 271 GLY ALA PRO SER SER ASP ILE GLN VAL ARG PHE TYR GLU SEQRES 15 D 271 LYS ASN VAL GLN MET GLY MET ASP ILE ASP VAL TRP ASN SEQRES 16 D 271 ARG THR GLU ILE GLN LEU ARG ASP ASP ARG ALA HIS VAL SEQRES 17 D 271 VAL ALA GLN ILE ILE ALA ASP ASP VAL LEU PRO LEU GLY SEQRES 18 D 271 GLU ILE VAL ALA GLY LEU LEU ARG ASN TYR ILE GLN PHE SEQRES 19 D 271 ARG THR ARG LYS ALA THR ASP LYS ASN LYS LYS ARG TRP SEQRES 20 D 271 PRO LEU ALA ARG PHE TRP LEU ASN PHE LEU GLY ASP VAL SEQRES 21 D 271 GLN PRO LEU ARG ILE ALA LYS GLN MET PRO LYS FORMUL 5 HOH *219(H2 O) HELIX 1 1 LYS A 28 LEU A 36 1 9 HELIX 2 2 ASN A 39 ALA A 41 5 3 HELIX 3 3 THR A 82 THR A 93 1 12 HELIX 4 4 ASN A 96 GLU A 107 1 12 HELIX 5 5 LYS A 127 ASP A 137 1 11 HELIX 6 6 LYS A 181 MET A 185 1 5 HELIX 7 7 ASP A 201 ASP A 214 1 14 HELIX 8 8 PRO A 217 TYR A 229 1 13 HELIX 9 9 ASN A 241 TRP A 245 5 5 HELIX 10 10 ALA A 248 GLN A 259 1 12 HELIX 11 11 LYS B 28 LEU B 36 1 9 HELIX 12 12 ASN B 39 ALA B 41 5 3 HELIX 13 13 THR B 82 THR B 93 1 12 HELIX 14 14 ASN B 96 GLU B 107 1 12 HELIX 15 15 LYS B 127 ASP B 137 1 11 HELIX 16 16 LYS B 181 GLY B 186 1 6 HELIX 17 17 ASP B 201 ASP B 214 1 14 HELIX 18 18 PRO B 217 TYR B 229 1 13 HELIX 19 19 ASN B 241 TRP B 245 5 5 HELIX 20 20 ALA B 248 GLN B 259 1 12 HELIX 21 21 LYS C 28 LEU C 36 1 9 HELIX 22 22 ASN C 39 ALA C 41 5 3 HELIX 23 23 THR C 82 THR C 93 1 12 HELIX 24 24 ASN C 96 GLU C 107 1 12 HELIX 25 25 LYS C 127 ASP C 137 1 11 HELIX 26 26 LYS C 181 MET C 185 1 5 HELIX 27 27 ASP C 201 ASP C 214 1 14 HELIX 28 28 PRO C 217 TYR C 229 1 13 HELIX 29 29 ASN C 241 TRP C 245 5 5 HELIX 30 30 ALA C 248 GLN C 259 1 12 HELIX 31 31 LYS D 28 LEU D 36 1 9 HELIX 32 32 ASN D 39 ALA D 41 5 3 HELIX 33 33 THR D 82 THR D 93 1 12 HELIX 34 34 ASN D 96 GLU D 107 1 12 HELIX 35 35 LYS D 127 ASP D 137 1 11 HELIX 36 36 LYS D 181 MET D 185 1 5 HELIX 37 37 ASP D 201 ASP D 214 1 14 HELIX 38 38 PRO D 217 TYR D 229 1 13 HELIX 39 39 ASN D 241 TRP D 245 5 5 HELIX 40 40 ALA D 248 GLN D 259 1 12 SHEET 1 AA20 PHE A 43 PRO A 45 0 SHEET 2 AA20 GLN A 55 PHE A 59 -1 O ALA A 58 N LEU A 44 SHEET 3 AA20 LEU A 65 TYR A 69 -1 O LEU A 65 N PHE A 59 SHEET 4 AA20 ILE A 77 MET A 81 -1 O HIS A 78 N TYR A 68 SHEET 5 AA20 LEU A 4 PHE A 15 -1 O LEU A 11 N MET A 81 SHEET 6 AA20 VAL A 110 ASP A 121 -1 O ASN A 111 N THR A 14 SHEET 7 AA20 ASN A 193 ARG A 200 -1 O ASN A 193 N ASP A 121 SHEET 8 AA20 ILE A 174 GLU A 180 -1 O GLN A 175 N GLN A 198 SHEET 9 AA20 THR A 160 PHE A 167 -1 O HIS A 163 N GLU A 180 SHEET 10 AA20 LYS A 146 VAL A 154 -1 O ARG A 148 N TYR A 166 SHEET 11 AA20 LYS C 146 VAL C 154 -1 O ALA C 147 N ILE A 153 SHEET 12 AA20 THR C 160 PHE C 167 -1 N ILE C 161 O ASN C 152 SHEET 13 AA20 ILE C 174 GLU C 180 -1 O VAL C 176 N PHE C 167 SHEET 14 AA20 ASN C 193 ARG C 200 -1 O ARG C 194 N TYR C 179 SHEET 15 AA20 VAL C 110 ASP C 121 -1 O LEU C 115 N LEU C 199 SHEET 16 AA20 LEU C 4 PHE C 15 -1 O LYS C 5 N ASP C 120 SHEET 17 AA20 ILE C 77 MET C 81 -1 O ILE C 77 N PHE C 15 SHEET 18 AA20 LEU C 65 TYR C 69 -1 O ALA C 66 N GLU C 80 SHEET 19 AA20 GLN C 55 PHE C 59 -1 O GLN C 55 N TYR C 69 SHEET 20 AA20 PHE C 43 PRO C 45 -1 O LEU C 44 N ALA C 58 SHEET 1 AB 2 VAL A 140 SER A 142 0 SHEET 2 AB 2 ILE A 230 PHE A 232 -1 O GLN A 231 N THR A 141 SHEET 1 BA20 PHE B 43 PRO B 45 0 SHEET 2 BA20 GLN B 55 PHE B 59 -1 O ALA B 58 N LEU B 44 SHEET 3 BA20 LEU B 65 TYR B 69 -1 O LEU B 65 N PHE B 59 SHEET 4 BA20 ILE B 77 MET B 81 -1 O HIS B 78 N TYR B 68 SHEET 5 BA20 LEU B 4 PHE B 15 -1 O LEU B 11 N MET B 81 SHEET 6 BA20 VAL B 110 ASP B 121 -1 O ASN B 111 N THR B 14 SHEET 7 BA20 ASN B 193 ARG B 200 -1 O ASN B 193 N ASP B 121 SHEET 8 BA20 ILE B 174 GLU B 180 -1 O GLN B 175 N GLN B 198 SHEET 9 BA20 THR B 160 PHE B 167 -1 O HIS B 163 N GLU B 180 SHEET 10 BA20 LYS B 146 VAL B 154 -1 O ARG B 148 N TYR B 166 SHEET 11 BA20 LYS D 146 VAL D 154 -1 O ALA D 147 N ILE B 153 SHEET 12 BA20 THR D 160 PHE D 167 -1 N ILE D 161 O ASN D 152 SHEET 13 BA20 ILE D 174 GLU D 180 -1 O VAL D 176 N PHE D 167 SHEET 14 BA20 ASN D 193 ARG D 200 -1 O ARG D 194 N TYR D 179 SHEET 15 BA20 VAL D 110 ASP D 121 -1 O LEU D 115 N LEU D 199 SHEET 16 BA20 LEU D 4 PHE D 15 -1 O LYS D 5 N ASP D 120 SHEET 17 BA20 ILE D 77 MET D 81 -1 O ILE D 77 N PHE D 15 SHEET 18 BA20 LEU D 65 TYR D 69 -1 O ALA D 66 N GLU D 80 SHEET 19 BA20 GLN D 55 PHE D 59 -1 O GLN D 55 N TYR D 69 SHEET 20 BA20 PHE D 43 PRO D 45 -1 O LEU D 44 N ALA D 58 SHEET 1 BB 2 VAL B 140 SER B 142 0 SHEET 2 BB 2 ILE B 230 PHE B 232 -1 O GLN B 231 N THR B 141 SHEET 1 CA 2 VAL C 140 SER C 142 0 SHEET 2 CA 2 ILE C 230 PHE C 232 -1 O GLN C 231 N THR C 141 SHEET 1 DA 2 VAL D 140 SER D 142 0 SHEET 2 DA 2 ILE D 230 PHE D 232 -1 O GLN D 231 N THR D 141 CRYST1 66.111 136.848 149.157 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015126 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007307 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006704 0.00000