HEADER CELL ADHESION 19-DEC-13 4CJD TITLE CRYSTAL STRUCTURE OF NEISSERIA MENINGITIDIS TRIMERIC TITLE 2 AUTOTRANSPORTER AND VACCINE ANTIGEN NADA COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ADHESIN A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 487; SOURCE 4 STRAIN: M01-240320; SOURCE 5 VARIANT: VARIANT 5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET21B KEYWDS CELL ADHESION, TRIMERIC AUTO-TRANSPORTER (TAA), COILED-COIL EXPDTA X-RAY DIFFRACTION AUTHOR E.MALITO,M.BIANCUCCI,G.SPRAGGON,M.J.BOTTOMLEY REVDAT 2 17-DEC-14 4CJD 1 JRNL REVDAT 1 26-NOV-14 4CJD 0 JRNL AUTH E.MALITO,M.BIANCUCCI,A.FALERI,I.FERLENGHI,M.SCARSELLI, JRNL AUTH 2 G.MARUGGI,P.LO SURDO,D.VEGGI,A.LIGUORI,L.SANTINI,I.BERTOLDI, JRNL AUTH 3 R.PETRACCA,S.MARCHI,G.ROMAGNOLI,E.CARTOCCI,I.VERCELLINO, JRNL AUTH 4 S.SAVINO,G.SPRAGGON,N.NORAIS,M.PIZZA,R.RAPPUOLI,V.MASIGNANI, JRNL AUTH 5 M.J.BOTTOMLEY JRNL TITL STRUCTURE OF THE MENINGOCOCCAL VACCINE ANTIGEN NADA AND JRNL TITL 2 EPITOPE MAPPING OF A BACTERICIDAL ANTIBODY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 17128 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 25404323 JRNL DOI 10.1073/PNAS.1419686111 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.056 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.162 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 3.50 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.30 REMARK 3 NUMBER OF REFLECTIONS : 34948 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1830 REMARK 3 R VALUE (WORKING SET) : 0.1818 REMARK 3 FREE R VALUE : 0.2071 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 1744 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1750 - 4.7063 1.00 2791 150 0.2441 0.2704 REMARK 3 2 4.7063 - 3.7360 1.00 2805 150 0.1741 0.1870 REMARK 3 3 3.7360 - 3.2639 1.00 2795 143 0.1501 0.1764 REMARK 3 4 3.2639 - 2.9655 1.00 2788 138 0.1618 0.1967 REMARK 3 5 2.9655 - 2.7530 1.00 2799 149 0.1436 0.1627 REMARK 3 6 2.7530 - 2.5907 1.00 2781 148 0.1467 0.1729 REMARK 3 7 2.5907 - 2.4609 1.00 2737 140 0.1583 0.1867 REMARK 3 8 2.4609 - 2.3538 1.00 2816 149 0.1623 0.1857 REMARK 3 9 2.3538 - 2.2632 1.00 2785 151 0.1716 0.2495 REMARK 3 10 2.2632 - 2.1851 1.00 2797 146 0.2008 0.2365 REMARK 3 11 2.1851 - 2.1168 1.00 2747 144 0.2167 0.2339 REMARK 3 12 2.1168 - 2.0563 0.92 2563 136 0.2825 0.2686 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.18 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 912 REMARK 3 ANGLE : 1.207 1237 REMARK 3 CHIRALITY : 0.054 148 REMARK 3 PLANARITY : 0.005 168 REMARK 3 DIHEDRAL : 12.817 332 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3629 6.2872 192.2606 REMARK 3 T TENSOR REMARK 3 T11: 0.0407 T22: 0.0272 REMARK 3 T33: 0.2796 T12: 0.0188 REMARK 3 T13: 0.0011 T23: 0.0320 REMARK 3 L TENSOR REMARK 3 L11: 1.2573 L22: 1.3739 REMARK 3 L33: 1.2486 L12: 0.0776 REMARK 3 L13: -0.4166 L23: -0.2558 REMARK 3 S TENSOR REMARK 3 S11: -0.0341 S12: -0.0148 S13: 0.0884 REMARK 3 S21: 0.0472 S22: -0.0859 S23: -0.0650 REMARK 3 S31: 0.0234 S32: -0.0201 S33: -0.0932 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1022 -8.0610 116.1676 REMARK 3 T TENSOR REMARK 3 T11: 1.6923 T22: 1.3171 REMARK 3 T33: 0.6072 T12: 0.1033 REMARK 3 T13: 0.0247 T23: -0.0689 REMARK 3 L TENSOR REMARK 3 L11: 0.1222 L22: 0.0072 REMARK 3 L33: 1.6896 L12: 0.0275 REMARK 3 L13: 0.4263 L23: 0.0796 REMARK 3 S TENSOR REMARK 3 S11: -0.0371 S12: -0.2146 S13: 0.1191 REMARK 3 S21: 0.1965 S22: -0.2688 S23: 0.2034 REMARK 3 S31: 0.7775 S32: -0.0357 S33: 0.2310 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 210 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9936 -15.9615 21.3989 REMARK 3 T TENSOR REMARK 3 T11: 0.5918 T22: 1.2094 REMARK 3 T33: 0.8443 T12: -0.0076 REMARK 3 T13: -0.0128 T23: -0.1648 REMARK 3 L TENSOR REMARK 3 L11: 3.3593 L22: 5.3301 REMARK 3 L33: 3.3830 L12: -0.6843 REMARK 3 L13: -0.0659 L23: -0.8350 REMARK 3 S TENSOR REMARK 3 S11: 0.0674 S12: 0.2279 S13: 0.1434 REMARK 3 S21: -0.1330 S22: 0.3335 S23: -0.8821 REMARK 3 S31: -0.0349 S32: 0.6461 S33: -0.2883 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 RESIDUES 138-198 OF THE ORIGINAL CONSTRUCT WERE NOT REMARK 3 MODELLED BECAUSE OF WEAK OR MISSING ELECTRON DENSITY, REMARK 3 LIKELY DUE TO DISORDER. REMARK 4 REMARK 4 4CJD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-DEC-13. REMARK 100 THE PDBE ID CODE IS EBI-59271. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 2M) REMARK 200 DETECTOR MANUFACTURER : PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34971 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.05 REMARK 200 RESOLUTION RANGE LOW (A) : 48.10 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 9.4 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06 REMARK 200 FOR THE DATA SET : 22.75 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.3 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.82 REMARK 200 FOR SHELL : 2.18 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% TACSIMATE PH 4.0, 20% PEG REMARK 280 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 25.61350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 14.78796 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 192.64733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 25.61350 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 14.78796 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 192.64733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 25.61350 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 14.78796 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 192.64733 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 25.61350 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 14.78796 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 192.64733 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 25.61350 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 14.78796 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 192.64733 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 25.61350 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 14.78796 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 192.64733 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 29.57592 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 385.29467 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 29.57592 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 385.29467 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 29.57592 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 385.29467 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 29.57592 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 385.29467 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 29.57592 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 385.29467 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 29.57592 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 385.29467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2034 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2077 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 22 REMARK 465 LYS A 23 REMARK 465 ASP A 24 REMARK 465 ASN A 25 REMARK 465 PRO A 26 REMARK 465 ILE A 138 REMARK 465 ALA A 139 REMARK 465 THR A 140 REMARK 465 LYS A 141 REMARK 465 ALA A 142 REMARK 465 ASP A 143 REMARK 465 LYS A 144 REMARK 465 THR A 145 REMARK 465 GLU A 146 REMARK 465 LEU A 147 REMARK 465 ASP A 148 REMARK 465 GLU A 149 REMARK 465 VAL A 150 REMARK 465 SER A 151 REMARK 465 GLY A 152 REMARK 465 LYS A 153 REMARK 465 VAL A 154 REMARK 465 THR A 155 REMARK 465 ALA A 156 REMARK 465 ASN A 157 REMARK 465 GLU A 158 REMARK 465 THR A 159 REMARK 465 ALA A 160 REMARK 465 ILE A 161 REMARK 465 GLY A 162 REMARK 465 LYS A 163 REMARK 465 LYS A 164 REMARK 465 ALA A 165 REMARK 465 ASN A 166 REMARK 465 SER A 167 REMARK 465 ALA A 168 REMARK 465 ASP A 169 REMARK 465 VAL A 170 REMARK 465 TYR A 171 REMARK 465 THR A 172 REMARK 465 LYS A 173 REMARK 465 ALA A 174 REMARK 465 GLU A 175 REMARK 465 VAL A 176 REMARK 465 TYR A 177 REMARK 465 THR A 178 REMARK 465 LYS A 179 REMARK 465 GLN A 180 REMARK 465 GLU A 181 REMARK 465 SER A 182 REMARK 465 ASP A 183 REMARK 465 ASN A 184 REMARK 465 ARG A 185 REMARK 465 PHE A 186 REMARK 465 VAL A 187 REMARK 465 LYS A 188 REMARK 465 ILE A 189 REMARK 465 GLY A 190 REMARK 465 ASP A 191 REMARK 465 ARG A 192 REMARK 465 ILE A 193 REMARK 465 GLY A 194 REMARK 465 ASN A 195 REMARK 465 LEU A 196 REMARK 465 ASN A 197 REMARK 465 THR A 198 REMARK 465 GLU A 211 REMARK 465 LYS A 212 REMARK 465 SER A 213 REMARK 465 VAL A 214 REMARK 465 LYS A 215 REMARK 465 ASP A 216 REMARK 465 HIS A 217 REMARK 465 GLY A 218 REMARK 465 THR A 219 REMARK 465 ARG A 220 REMARK 465 ALA A 221 REMARK 465 SER A 222 REMARK 465 LYS A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 HIS A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2020 O HOH A 2021 2.17 REMARK 500 O HOH A 2035 O HOH A 2059 2.14 REMARK 500 O HOH A 2081 O HOH A 2087 2.13 REMARK 500 O HOH A 2087 O HOH A 2091 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2081 O HOH A 2088 3555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 209 4.46 -67.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A1002 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE UNIPROT SEQUENCE PROVIDED HEREIN (A0ELI2) DOES NOT MATCH WITH REMARK 999 THE SEQUENCE OF THE CLONE CRYSTALLISED, WHICH CORRESPONDS TO THE REMARK 999 NATURAL VARIANT 5 OF NADA AND WHICH AT THE MOMENT LACKS A GENBANK REMARK 999 OR UNIPROT ENTRY. DBREF 4CJD A 24 220 UNP A0ELI2 A0ELI2_NEIME 24 221 SEQADV 4CJD MET A 22 UNP A0ELI2 EXPRESSION TAG SEQADV 4CJD LYS A 23 UNP A0ELI2 EXPRESSION TAG SEQADV 4CJD ALA A 221 UNP A0ELI2 EXPRESSION TAG SEQADV 4CJD SER A 222 UNP A0ELI2 EXPRESSION TAG SEQADV 4CJD LYS A 223 UNP A0ELI2 EXPRESSION TAG SEQADV 4CJD HIS A 224 UNP A0ELI2 EXPRESSION TAG SEQADV 4CJD HIS A 225 UNP A0ELI2 EXPRESSION TAG SEQADV 4CJD HIS A 226 UNP A0ELI2 EXPRESSION TAG SEQADV 4CJD HIS A 227 UNP A0ELI2 EXPRESSION TAG SEQADV 4CJD HIS A 228 UNP A0ELI2 EXPRESSION TAG SEQADV 4CJD HIS A 229 UNP A0ELI2 EXPRESSION TAG SEQADV 4CJD GLY A 40 UNP A0ELI2 ASN 40 CONFLICT SEQADV 4CJD VAL A 41 UNP A0ELI2 SER 41 CONFLICT SEQADV 4CJD A UNP A0ELI2 GLY 50 DELETION SEQADV 4CJD GLU A 61 UNP A0ELI2 ASN 61 CONFLICT SEQADV 4CJD GLN A 64 UNP A0ELI2 LYS 65 CONFLICT SEQADV 4CJD PRO A 65 UNP A0ELI2 ILE 66 CONFLICT SEQADV 4CJD LYS A 66 UNP A0ELI2 THR 67 CONFLICT SEQADV 4CJD GLY A 67 UNP A0ELI2 ARG 68 CONFLICT SEQADV 4CJD ARG A 68 UNP A0ELI2 LYS 69 CONFLICT SEQADV 4CJD PRO A 69 UNP A0ELI2 THR 70 CONFLICT SEQADV 4CJD GLU A 104 UNP A0ELI2 ASP 105 CONFLICT SEQADV 4CJD ARG A 132 UNP A0ELI2 GLY 133 CONFLICT SEQADV 4CJD THR A 140 UNP A0ELI2 LYS 141 CONFLICT SEQADV 4CJD LYS A 144 UNP A0ELI2 GLN 145 CONFLICT SEQADV 4CJD GLU A 146 UNP A0ELI2 ALA 147 CONFLICT SEQADV 4CJD GLU A 149 UNP A0ELI2 ALA 150 CONFLICT SEQADV 4CJD GLY A 152 UNP A0ELI2 GLU 153 CONFLICT SEQADV 4CJD LYS A 215 UNP A0ELI2 ALA 216 CONFLICT SEQRES 1 A 208 MET LYS ASP ASN PRO PRO PRO SER THR ASP GLU ILE ALA SEQRES 2 A 208 LYS ALA ALA LEU VAL GLY VAL TYR ASN ASN THR GLN ASP SEQRES 3 A 208 ILE ASN GLY PHE LYS VAL GLY ASP THR ILE TYR ASP ILE SEQRES 4 A 208 GLU ASN GLY GLN PRO LYS GLY ARG PRO ALA THR GLU ASP SEQRES 5 A 208 ASP VAL LYS ALA ASP ASP PHE GLY GLY LEU GLY LEU LYS SEQRES 6 A 208 GLU VAL LEU ALA GLN HIS ASP GLN SER LEU ALA ASP LEU SEQRES 7 A 208 THR GLY THR VAL GLU GLU ASN SER GLU ALA LEU VAL LYS SEQRES 8 A 208 THR ALA GLU VAL VAL ASN ASP ILE SER ALA ASP VAL LYS SEQRES 9 A 208 ALA ASN THR ALA ALA ILE ARG GLU ASN LYS ALA ALA ILE SEQRES 10 A 208 ALA THR LYS ALA ASP LYS THR GLU LEU ASP GLU VAL SER SEQRES 11 A 208 GLY LYS VAL THR ALA ASN GLU THR ALA ILE GLY LYS LYS SEQRES 12 A 208 ALA ASN SER ALA ASP VAL TYR THR LYS ALA GLU VAL TYR SEQRES 13 A 208 THR LYS GLN GLU SER ASP ASN ARG PHE VAL LYS ILE GLY SEQRES 14 A 208 ASP ARG ILE GLY ASN LEU ASN THR THR ALA ASN GLY LEU SEQRES 15 A 208 GLU THR ARG LEU ALA ASP ALA GLU LYS SER VAL LYS ASP SEQRES 16 A 208 HIS GLY THR ARG ALA SER LYS HIS HIS HIS HIS HIS HIS HET IOD A1001 1 HET IOD A1002 1 HET IOD A1003 1 HET IOD A1004 1 HETNAM IOD IODIDE ION FORMUL 2 IOD 4(I 1-) FORMUL 3 HOH *100(H2 O) HELIX 1 1 SER A 29 GLY A 50 1 22 HELIX 2 2 THR A 71 ASP A 78 1 8 HELIX 3 3 GLY A 84 LYS A 135 1 52 HELIX 4 4 THR A 199 ASP A 209 1 11 SHEET 1 AA 2 THR A 56 GLU A 61 0 SHEET 2 AA 2 GLN A 64 PRO A 69 -1 O GLN A 64 N GLU A 61 SITE 1 AC1 1 ASN A 44 SITE 1 AC2 1 ASN A 106 CRYST1 51.227 51.227 577.942 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019521 0.011270 0.000000 0.00000 SCALE2 0.000000 0.022541 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001730 0.00000