HEADER TRANSFERASE 06-JAN-14 4CKJ TITLE CRYSTAL STRUCTURE OF RET TYROSINE KINASE DOMAIN BOUND TO ADENOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RECEPTOR RET; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 705-1013; COMPND 5 SYNONYM: CADHERIN FAMILY MEMBER 12, PROTO-ONCOGENE C-RET; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.PLAZA-MENACHO,K.BARNOUIN,K.GOODMAN,R.J.MARTINEZ-TORRES,A.BORG, AUTHOR 2 J.MURRAY-RUST,S.MOUILLERON,P.KNOWLES,N.Q.MCDONALD REVDAT 4 20-DEC-23 4CKJ 1 REMARK LINK REVDAT 3 28-FEB-18 4CKJ 1 JRNL REVDAT 2 19-MAR-14 4CKJ 1 JRNL REMARK REVDAT 1 05-MAR-14 4CKJ 0 JRNL AUTH I.PLAZA-MENACHO,K.BARNOUIN,K.GOODMAN,R.J.MARTINEZ-TORRES, JRNL AUTH 2 A.BORG,J.MURRAY-RUST,S.MOUILLERON,P.KNOWLES,N.Q.MCDONALD JRNL TITL ONCOGENIC RET KINASE DOMAIN MUTATIONS PERTURB THE JRNL TITL 2 AUTOPHOSPHORYLATION TRAJECTORY BY ENHANCING SUBSTRATE JRNL TITL 3 PRESENTATION IN TRANS. JRNL REF MOL. CELL V. 53 738 2014 JRNL REFN ISSN 1097-4164 JRNL PMID 24560924 JRNL DOI 10.1016/J.MOLCEL.2014.01.015 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 3 NUMBER OF REFLECTIONS : 41491 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7582 - 4.0686 0.88 2657 130 0.1570 0.1729 REMARK 3 2 4.0686 - 3.2295 0.90 2631 159 0.1437 0.1444 REMARK 3 3 3.2295 - 2.8213 0.90 2645 126 0.1433 0.1941 REMARK 3 4 2.8213 - 2.5634 0.91 2656 144 0.1541 0.2019 REMARK 3 5 2.5634 - 2.3797 0.90 2632 141 0.1429 0.1826 REMARK 3 6 2.3797 - 2.2394 0.87 2568 134 0.1455 0.1547 REMARK 3 7 2.2394 - 2.1272 0.89 2609 133 0.1370 0.1837 REMARK 3 8 2.1272 - 2.0346 0.88 2572 126 0.1362 0.1720 REMARK 3 9 2.0346 - 1.9563 0.90 2630 146 0.1384 0.1936 REMARK 3 10 1.9563 - 1.8888 0.90 2611 144 0.1537 0.2044 REMARK 3 11 1.8888 - 1.8297 0.89 2588 130 0.1745 0.2378 REMARK 3 12 1.8297 - 1.7774 0.92 2691 142 0.1888 0.2293 REMARK 3 13 1.7774 - 1.7306 0.92 2666 154 0.2141 0.2582 REMARK 3 14 1.7306 - 1.6884 0.90 2637 131 0.2503 0.2922 REMARK 3 15 1.6884 - 1.6500 0.89 2608 150 0.2683 0.3306 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 2540 REMARK 3 ANGLE : 1.838 3437 REMARK 3 CHIRALITY : 0.115 378 REMARK 3 PLANARITY : 0.010 433 REMARK 3 DIHEDRAL : 15.030 958 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 700 THROUGH 781 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7632 3.4378 2.7365 REMARK 3 T TENSOR REMARK 3 T11: 0.1572 T22: 0.1639 REMARK 3 T33: 0.2632 T12: 0.0042 REMARK 3 T13: -0.0025 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.7812 L22: 1.7448 REMARK 3 L33: 0.4238 L12: -1.0751 REMARK 3 L13: -0.5677 L23: 0.6981 REMARK 3 S TENSOR REMARK 3 S11: -0.0430 S12: 0.1811 S13: -0.0873 REMARK 3 S21: -0.0325 S22: 0.0358 S23: 0.2568 REMARK 3 S31: 0.0370 S32: -0.1170 S33: 0.0136 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 782 THROUGH 847 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0660 9.4253 14.6998 REMARK 3 T TENSOR REMARK 3 T11: 0.2446 T22: 0.1636 REMARK 3 T33: 0.2172 T12: 0.0320 REMARK 3 T13: -0.0040 T23: -0.0231 REMARK 3 L TENSOR REMARK 3 L11: 1.4250 L22: 1.0594 REMARK 3 L33: 1.6314 L12: -0.4316 REMARK 3 L13: 0.1252 L23: -0.2805 REMARK 3 S TENSOR REMARK 3 S11: -0.0762 S12: -0.0787 S13: 0.1893 REMARK 3 S21: 0.1374 S22: -0.0426 S23: 0.1489 REMARK 3 S31: -0.2644 S32: -0.0331 S33: 0.0406 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 848 THROUGH 1013 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8849 -1.5304 20.8626 REMARK 3 T TENSOR REMARK 3 T11: 0.2219 T22: 0.2458 REMARK 3 T33: 0.1488 T12: 0.0132 REMARK 3 T13: -0.0078 T23: 0.0379 REMARK 3 L TENSOR REMARK 3 L11: 1.6255 L22: 0.9812 REMARK 3 L33: 1.4471 L12: -0.5368 REMARK 3 L13: -0.4606 L23: 0.4027 REMARK 3 S TENSOR REMARK 3 S11: -0.0831 S12: -0.3991 S13: -0.1519 REMARK 3 S21: 0.1921 S22: 0.0013 S23: -0.0058 REMARK 3 S31: -0.0682 S32: 0.1194 S33: -0.0052 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CKJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1290059341. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.970 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46229 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2IVT REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.59500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.54500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.59500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.54500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 73.19000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A3000 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 823 REMARK 465 PRO A 824 REMARK 465 GLY A 825 REMARK 465 TYR A 826 REMARK 465 LEU A 827 REMARK 465 GLY A 828 REMARK 465 SER A 829 REMARK 465 GLY A 830 REMARK 465 GLY A 831 REMARK 465 SER A 832 REMARK 465 ARG A 833 REMARK 465 ASN A 834 REMARK 465 SER A 835 REMARK 465 SER A 836 REMARK 465 SER A 837 REMARK 465 LEU A 838 REMARK 465 ASP A 839 REMARK 465 HIS A 840 REMARK 465 PRO A 841 REMARK 465 ASP A 842 REMARK 465 GLU A 843 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 711 CG1 CG2 CD1 REMARK 470 LEU A 712 CG CD1 CD2 REMARK 470 LYS A 789 CE NZ REMARK 470 ASP A 797 CG OD1 OD2 REMARK 470 ARG A 820 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 822 CG1 CG2 REMARK 470 GLU A 901 CG CD OE1 OE2 REMARK 470 GLU A 902 CG CD OE1 OE2 REMARK 470 ARG A 959 CD NE CZ NH1 NH2 REMARK 470 GLU A 971 CD OE1 OE2 REMARK 470 GLU A 978 CG CD OE1 OE2 REMARK 470 GLU A 979 CG CD OE1 OE2 REMARK 470 ARG A 982 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 986 CD OE1 NE2 REMARK 470 LYS A 994 CD CE NZ REMARK 470 LYS A1003 CE NZ REMARK 470 LYS A1007 CD CE NZ REMARK 470 LYS A1011 CE NZ REMARK 470 ARG A1012 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1013 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 762 O HOH A 3038 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 886 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 713 79.64 -119.43 REMARK 500 ARG A 873 -13.67 77.65 REMARK 500 GLU A 884 124.31 -29.26 REMARK 500 ASP A 892 74.35 61.96 REMARK 500 ASP A 974 -71.63 -51.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADN A 2014 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2015 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2016 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2017 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2018 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2019 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2020 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2021 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2022 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2023 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2024 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2025 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2026 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2027 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2028 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2029 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2030 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CKI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ONCOGENIC RET TYROSINE KINASE M918T BOUND TO REMARK 900 ADENOSINE REMARK 999 REMARK 999 SEQUENCE REMARK 999 N TERMINAL RESIDUES GPLSL ARE VECTOR DERIVES RESIDUES. DBREF 4CKJ A 705 1013 UNP P07949 RET_HUMAN 705 1013 SEQADV 4CKJ GLY A 700 UNP P07949 EXPRESSION TAG SEQADV 4CKJ PRO A 701 UNP P07949 EXPRESSION TAG SEQADV 4CKJ LEU A 702 UNP P07949 EXPRESSION TAG SEQADV 4CKJ SER A 703 UNP P07949 EXPRESSION TAG SEQADV 4CKJ LEU A 704 UNP P07949 EXPRESSION TAG SEQRES 1 A 314 GLY PRO LEU SER LEU SER VAL ASP ALA PHE LYS ILE LEU SEQRES 2 A 314 GLU ASP PRO LYS TRP GLU PHE PRO ARG LYS ASN LEU VAL SEQRES 3 A 314 LEU GLY LYS THR LEU GLY GLU GLY GLU PHE GLY LYS VAL SEQRES 4 A 314 VAL LYS ALA THR ALA PHE HIS LEU LYS GLY ARG ALA GLY SEQRES 5 A 314 TYR THR THR VAL ALA VAL LYS MET LEU LYS GLU ASN ALA SEQRES 6 A 314 SER PRO SER GLU LEU ARG ASP LEU LEU SER GLU PHE ASN SEQRES 7 A 314 VAL LEU LYS GLN VAL ASN HIS PRO HIS VAL ILE LYS LEU SEQRES 8 A 314 TYR GLY ALA CYS SER GLN ASP GLY PRO LEU LEU LEU ILE SEQRES 9 A 314 VAL GLU TYR ALA LYS TYR GLY SER LEU ARG GLY PHE LEU SEQRES 10 A 314 ARG GLU SER ARG LYS VAL GLY PRO GLY TYR LEU GLY SER SEQRES 11 A 314 GLY GLY SER ARG ASN SER SER SER LEU ASP HIS PRO ASP SEQRES 12 A 314 GLU ARG ALA LEU THR MET GLY ASP LEU ILE SER PHE ALA SEQRES 13 A 314 TRP GLN ILE SER GLN GLY MET GLN TYR LEU ALA GLU MET SEQRES 14 A 314 LYS LEU VAL HIS ARG ASP LEU ALA ALA ARG ASN ILE LEU SEQRES 15 A 314 VAL ALA GLU GLY ARG LYS MET LYS ILE SER ASP PHE GLY SEQRES 16 A 314 LEU SER ARG ASP VAL TYR GLU GLU ASP SER PTR VAL LYS SEQRES 17 A 314 ARG SER GLN GLY ARG ILE PRO VAL LYS TRP MET ALA ILE SEQRES 18 A 314 GLU SER LEU PHE ASP HIS ILE TYR THR THR GLN SER ASP SEQRES 19 A 314 VAL TRP SER PHE GLY VAL LEU LEU TRP GLU ILE VAL THR SEQRES 20 A 314 LEU GLY GLY ASN PRO TYR PRO GLY ILE PRO PRO GLU ARG SEQRES 21 A 314 LEU PHE ASN LEU LEU LYS THR GLY HIS ARG MET GLU ARG SEQRES 22 A 314 PRO ASP ASN CYS SER GLU GLU MET TYR ARG LEU MET LEU SEQRES 23 A 314 GLN CYS TRP LYS GLN GLU PRO ASP LYS ARG PRO VAL PHE SEQRES 24 A 314 ALA ASP ILE SER LYS ASP LEU GLU LYS MET MET VAL LYS SEQRES 25 A 314 ARG ARG MODRES 4CKJ PTR A 905 TYR O-PHOSPHOTYROSINE HET PTR A 905 16 HET ADN A2014 19 HET FMT A2015 3 HET FMT A2016 3 HET FMT A2017 3 HET FMT A2018 3 HET FMT A2019 3 HET FMT A2020 3 HET FMT A2021 3 HET FMT A2022 3 HET FMT A2023 3 HET FMT A2024 3 HET FMT A2025 3 HET FMT A2026 3 HET FMT A2027 3 HET FMT A2028 3 HET FMT A2029 3 HET FMT A2030 3 HETNAM PTR O-PHOSPHOTYROSINE HETNAM ADN ADENOSINE HETNAM FMT FORMIC ACID HETSYN PTR PHOSPHONOTYROSINE FORMUL 1 PTR C9 H12 N O6 P FORMUL 2 ADN C10 H13 N5 O4 FORMUL 3 FMT 16(C H2 O2) FORMUL 19 HOH *107(H2 O) HELIX 1 1 GLY A 700 LEU A 712 1 13 HELIX 2 2 PRO A 720 LYS A 722 5 3 HELIX 3 3 SER A 765 LYS A 780 1 16 HELIX 4 4 SER A 811 GLU A 818 1 8 HELIX 5 5 THR A 847 MET A 868 1 22 HELIX 6 6 ALA A 876 ARG A 878 5 3 HELIX 7 7 PRO A 914 MET A 918 5 5 HELIX 8 8 ALA A 919 HIS A 926 1 8 HELIX 9 9 THR A 929 THR A 946 1 18 HELIX 10 10 PRO A 956 GLU A 958 5 3 HELIX 11 11 ARG A 959 THR A 966 1 8 HELIX 12 12 SER A 977 TRP A 988 1 12 HELIX 13 13 GLU A 991 ARG A 995 5 5 HELIX 14 14 VAL A 997 ARG A 1013 1 17 SHEET 1 AA 5 LEU A 724 GLU A 732 0 SHEET 2 AA 5 GLY A 736 PHE A 744 -1 O VAL A 738 N LEU A 730 SHEET 3 AA 5 TYR A 752 LEU A 760 -1 O THR A 753 N ALA A 743 SHEET 4 AA 5 LEU A 801 GLU A 805 -1 O LEU A 802 N LYS A 758 SHEET 5 AA 5 LEU A 790 CYS A 794 -1 N TYR A 791 O ILE A 803 SHEET 1 AB 2 ARG A 820 LYS A 821 0 SHEET 2 AB 2 ALA A 845 LEU A 846 1 N LEU A 846 O ARG A 820 SHEET 1 AC 2 LEU A 870 VAL A 871 0 SHEET 2 AC 2 ARG A 897 ASP A 898 -1 O ARG A 897 N VAL A 871 SHEET 1 AD 2 ILE A 880 ALA A 883 0 SHEET 2 AD 2 LYS A 887 ILE A 890 -1 O LYS A 887 N ALA A 883 SHEET 1 AE 2 PTR A 905 VAL A 906 0 SHEET 2 AE 2 ILE A 927 TYR A 928 -1 O TYR A 928 N PTR A 905 LINK C SER A 904 N PTR A 905 1555 1555 1.33 LINK C PTR A 905 N VAL A 906 1555 1555 1.33 SITE 1 AC1 11 LEU A 730 GLY A 731 ALA A 756 GLU A 805 SITE 2 AC1 11 ALA A 807 SER A 811 LEU A 881 FMT A2016 SITE 3 AC1 11 HOH A3053 HOH A3069 HOH A3073 SITE 1 AC2 4 LYS A 728 LYS A 740 TYR A 806 FMT A2016 SITE 1 AC3 6 LEU A 730 ALA A 807 LYS A 808 GLY A 810 SITE 2 AC3 6 ADN A2014 FMT A2015 SITE 1 AC4 4 LYS A 722 ASN A 723 ARG A 908 FMT A2023 SITE 1 AC5 3 LYS A 737 LYS A 761 GLU A 762 SITE 1 AC6 8 GLY A 700 PRO A 701 LEU A 702 SER A 703 SITE 2 AC6 8 GLN A 910 LEU A 923 PHE A 924 HIS A 926 SITE 1 AC7 6 ARG A 770 LYS A 907 SER A 909 GLN A 910 SITE 2 AC7 6 ARG A 912 HOH A3040 SITE 1 AC8 3 THR A 946 LEU A 947 GLY A 948 SITE 1 AC9 5 ARG A 873 LEU A 895 LYS A 907 GLY A 911 SITE 2 AC9 5 ARG A 912 SITE 1 BC1 3 LYS A 722 ARG A 908 FMT A2017 SITE 1 BC2 8 PRO A 766 SER A 909 GLN A 910 GLY A 911 SITE 2 BC2 8 SER A 922 HIS A 926 TYR A 928 HOH A3080 SITE 1 BC3 4 SER A 703 PHE A 961 LYS A 965 HOH A3106 SITE 1 BC4 3 ASP A 903 THR A 929 THR A 930 SITE 1 BC5 3 ARG A 770 LEU A 773 SER A 774 SITE 1 BC6 4 LYS A 808 TYR A 809 GLU A 884 GLY A 885 SITE 1 BC7 2 HIS A 786 GLN A 860 SITE 1 BC8 7 LEU A 779 VAL A 782 ILE A 788 LYS A 789 SITE 2 BC8 7 LEU A 790 HOH A3044 HOH A3046 CRYST1 73.190 69.090 78.640 90.00 101.76 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013663 0.000000 0.002844 0.00000 SCALE2 0.000000 0.014474 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012989 0.00000