HEADER RECEPTOR 09-JAN-14 4CKV TITLE CRYSTAL STRUCTURE OF VEGFR-1 DOMAIN 2 IN PRESENCE OF ZN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 1; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: DOMAIN-2, RESIDUES 132-225; COMPND 5 SYNONYM: VEGFR-1, FMS-LIKE TYROSINE KINASE 1, FLT-1, TYROSINE-PROTEIN COMPND 6 KINASE FRT, TYROSINE-PROTEIN KINASE RECEPTOR FLT, FLT, VASCULAR COMPND 7 PERMEABILITY FACTOR RECEPTOR; COMPND 8 EC: 2.7.10.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA-GAMI PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET22 KEYWDS RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR J.-F.GAUCHER,M.REILLE-SEROUSSI,N.GAGEY-EILSTEIN,S.BROUSSY,P.CORIC, AUTHOR 2 B.SEIJO,M.-B.LASCOMBE,B.GAUTIER,W.-Q.LIU,F.HUGUENOT,N.INGUIMBERT, AUTHOR 3 S.BOUAZIZ,M.VIDAL,I.BROUTIN REVDAT 5 20-DEC-23 4CKV 1 REMARK LINK REVDAT 4 08-MAY-19 4CKV 1 REMARK REVDAT 3 06-MAR-19 4CKV 1 REMARK ATOM REVDAT 2 01-FEB-17 4CKV 1 JRNL REVDAT 1 28-JAN-15 4CKV 0 JRNL AUTH J.-F.GAUCHER,M.REILLE-SEROUSSI,N.GAGEY-EILSTEIN,S.BROUSSY, JRNL AUTH 2 P.CORIC,B.SEIJO,M.-B.LASCOMBE,B.GAUTIER,W.-Q.LIU,F.HUGUENOT, JRNL AUTH 3 N.INGUIMBERT,S.BOUAZIZ,M.VIDAL,I.BROUTIN JRNL TITL BIOPHYSICAL STUDIES OF THE INDUCED DIMERIZATION OF HUMAN JRNL TITL 2 VEGF R RECEPTOR 1 BINDING DOMAIN BY DIVALENT METALS JRNL TITL 3 COMPETING WITH VEGF-A JRNL REF PLOS ONE V. 11 67755 2016 JRNL REFN ESSN 1932-6203 JRNL PMID 27942001 JRNL DOI 10.1371/JOURNAL.PONE.0167755 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.940 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 8562 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 731 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8780 - 3.5143 0.96 2977 157 0.1593 0.1888 REMARK 3 2 3.5143 - 2.7894 0.97 2989 140 0.1519 0.1909 REMARK 3 3 2.7894 - 2.4369 0.97 3026 154 0.1709 0.2449 REMARK 3 4 2.4369 - 2.2141 0.97 2979 148 0.1739 0.2086 REMARK 3 5 2.2141 - 2.0554 0.82 2562 132 0.1843 0.2621 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.50 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 835 REMARK 3 ANGLE : 1.091 1131 REMARK 3 CHIRALITY : 0.076 129 REMARK 3 PLANARITY : 0.006 143 REMARK 3 DIHEDRAL : 13.741 323 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN X AND RESID 132:137) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0395 -28.6157 12.0867 REMARK 3 T TENSOR REMARK 3 T11: 0.2432 T22: 0.2228 REMARK 3 T33: 0.1548 T12: 0.0669 REMARK 3 T13: 0.0363 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.2139 L22: 0.0535 REMARK 3 L33: 0.0208 L12: -0.0480 REMARK 3 L13: -0.0125 L23: 0.0278 REMARK 3 S TENSOR REMARK 3 S11: 0.1318 S12: -0.2799 S13: 0.1837 REMARK 3 S21: 0.3313 S22: 0.3110 S23: 0.1254 REMARK 3 S31: -0.2721 S32: 0.1428 S33: 0.0378 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN X AND RESID 138:144) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8743 -29.5948 10.5401 REMARK 3 T TENSOR REMARK 3 T11: 0.2867 T22: 0.3220 REMARK 3 T33: 0.1954 T12: -0.0301 REMARK 3 T13: -0.0419 T23: -0.0294 REMARK 3 L TENSOR REMARK 3 L11: 0.2067 L22: 0.1097 REMARK 3 L33: 0.0941 L12: 0.0243 REMARK 3 L13: -0.0326 L23: -0.0109 REMARK 3 S TENSOR REMARK 3 S11: -0.4786 S12: -0.1783 S13: 0.2255 REMARK 3 S21: 0.2848 S22: 0.0860 S23: -0.0276 REMARK 3 S31: -0.0992 S32: 0.3652 S33: -0.0113 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN X AND RESID 145:153) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5716 -45.4141 0.3170 REMARK 3 T TENSOR REMARK 3 T11: 0.2771 T22: 0.2235 REMARK 3 T33: 0.4089 T12: 0.0190 REMARK 3 T13: -0.0128 T23: -0.0827 REMARK 3 L TENSOR REMARK 3 L11: 0.0840 L22: 0.0168 REMARK 3 L33: 0.3747 L12: 0.0346 REMARK 3 L13: 0.0859 L23: 0.0296 REMARK 3 S TENSOR REMARK 3 S11: 0.0371 S12: 0.3083 S13: -0.2124 REMARK 3 S21: 0.2704 S22: 0.2945 S23: -0.4049 REMARK 3 S31: 0.6117 S32: 0.5946 S33: 0.0018 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN X AND RESID 154:170) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9071 -31.8933 3.9696 REMARK 3 T TENSOR REMARK 3 T11: 0.1688 T22: 0.1372 REMARK 3 T33: 0.1526 T12: 0.0406 REMARK 3 T13: 0.0126 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 0.2663 L22: 0.3907 REMARK 3 L33: 0.2966 L12: 0.2048 REMARK 3 L13: 0.2589 L23: 0.3025 REMARK 3 S TENSOR REMARK 3 S11: 0.0536 S12: 0.1092 S13: 0.1866 REMARK 3 S21: 0.1808 S22: 0.0022 S23: -0.0008 REMARK 3 S31: 0.0299 S32: -0.1605 S33: 0.0154 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN X AND RESID 171:182) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5936 -32.2397 -7.4430 REMARK 3 T TENSOR REMARK 3 T11: 0.1679 T22: 0.3095 REMARK 3 T33: 0.1551 T12: -0.0136 REMARK 3 T13: -0.0107 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.3064 L22: 0.7947 REMARK 3 L33: 0.1512 L12: 0.1169 REMARK 3 L13: 0.1667 L23: -0.1656 REMARK 3 S TENSOR REMARK 3 S11: 0.2064 S12: 0.1155 S13: 0.0731 REMARK 3 S21: -0.2497 S22: -0.3118 S23: 0.2138 REMARK 3 S31: 0.1824 S32: 0.4225 S33: -0.0204 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN X AND RESID 183:190) REMARK 3 ORIGIN FOR THE GROUP (A): -20.9227 -38.2803 -0.5648 REMARK 3 T TENSOR REMARK 3 T11: 0.2343 T22: 0.1582 REMARK 3 T33: 0.1748 T12: -0.0066 REMARK 3 T13: 0.0278 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 0.0676 L22: -0.0011 REMARK 3 L33: 0.8991 L12: -0.0066 REMARK 3 L13: 0.2526 L23: 0.0097 REMARK 3 S TENSOR REMARK 3 S11: 0.0435 S12: 0.2118 S13: -0.2655 REMARK 3 S21: 0.0612 S22: 0.0747 S23: -0.1059 REMARK 3 S31: 0.5402 S32: -0.7051 S33: 0.0446 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN X AND RESID 191:199) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9329 -42.1695 -5.0924 REMARK 3 T TENSOR REMARK 3 T11: 0.1483 T22: 0.2537 REMARK 3 T33: 0.1578 T12: -0.0549 REMARK 3 T13: -0.0666 T23: -0.1884 REMARK 3 L TENSOR REMARK 3 L11: 0.5647 L22: 3.1161 REMARK 3 L33: 1.8053 L12: -0.4235 REMARK 3 L13: -0.0022 L23: -1.4125 REMARK 3 S TENSOR REMARK 3 S11: 0.0157 S12: 0.2161 S13: -0.4413 REMARK 3 S21: -0.4090 S22: 0.4880 S23: 0.2255 REMARK 3 S31: -0.2361 S32: 0.5054 S33: 0.8729 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN X AND RESID 200:205) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8522 -36.0209 -3.5873 REMARK 3 T TENSOR REMARK 3 T11: 0.2109 T22: 0.3476 REMARK 3 T33: 0.2261 T12: -0.0688 REMARK 3 T13: -0.0090 T23: -0.0512 REMARK 3 L TENSOR REMARK 3 L11: 0.0269 L22: 0.0212 REMARK 3 L33: 0.0337 L12: 0.0070 REMARK 3 L13: 0.0369 L23: 0.0056 REMARK 3 S TENSOR REMARK 3 S11: -0.1994 S12: 0.1783 S13: -0.1307 REMARK 3 S21: -0.2685 S22: 0.4650 S23: -0.0578 REMARK 3 S31: -0.1251 S32: -0.1618 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN X AND RESID 206:218) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7956 -21.9103 5.4366 REMARK 3 T TENSOR REMARK 3 T11: 0.2057 T22: 0.1393 REMARK 3 T33: 0.1814 T12: 0.0055 REMARK 3 T13: 0.0135 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.0110 L22: 0.0973 REMARK 3 L33: 0.1077 L12: -0.0350 REMARK 3 L13: -0.0025 L23: 0.0959 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: 0.0692 S13: 0.1734 REMARK 3 S21: -0.0236 S22: 0.0980 S23: -0.1601 REMARK 3 S31: -0.1281 S32: -0.0660 S33: 0.0101 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN X AND RESID 219:224) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1341 -37.8844 2.8738 REMARK 3 T TENSOR REMARK 3 T11: 0.2091 T22: 0.3024 REMARK 3 T33: 0.2926 T12: 0.0780 REMARK 3 T13: 0.0108 T23: -0.0657 REMARK 3 L TENSOR REMARK 3 L11: 0.0784 L22: 0.0776 REMARK 3 L33: 0.2058 L12: 0.0527 REMARK 3 L13: -0.1309 L23: -0.0165 REMARK 3 S TENSOR REMARK 3 S11: -0.1271 S12: -0.0865 S13: -0.4251 REMARK 3 S21: -0.2887 S22: -0.2522 S23: 0.0640 REMARK 3 S31: 0.1355 S32: 0.5447 S33: -0.0066 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CKV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1290059346. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN COOLED CHANNEL REMARK 200 -CUT SILICON MONOCHROMATOR REMARK 200 OPTICS : CYLINDRICAL GRAZING INCIDENCE REMARK 200 MIRROR BENT TO APPROXIMATE TO A REMARK 200 TOROIDAL CURVATURE REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8564 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 47.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.16000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 1FLT REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION METHOD, MOTHER REMARK 280 LIQUOR:1MM VEGFR-1-D2,0.1%(W/V) DDM,4MM LAXAPHYCINE-A,5MM HEPES/ REMARK 280 NAOH PH 7.5. RESERVOIR:18% (W/V) PEG8000,100MM HEPES/NAOH PH 7.5, REMARK 280 18C, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 13.73500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 13.73500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.86500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.19500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 47.86500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.19500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.73500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.86500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.19500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 13.73500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 47.86500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.19500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 13.73500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN X1226 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH X 2038 O HOH X 2068 2.16 REMARK 500 OH TYR X 220 O HOH X 2006 2.17 REMARK 500 OG SER X 195 O HOH X 2059 2.17 REMARK 500 OE1 GLU X 150 O HOH X 2023 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO X 157 42.29 -87.88 REMARK 500 LYS X 182 -79.67 -139.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X1226 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS X 147 NE2 REMARK 620 2 HIS X 147 NE2 111.8 REMARK 620 3 HIS X 223 NE2 111.8 104.1 REMARK 620 4 HIS X 223 NE2 104.1 111.7 113.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN X 1226 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO X 1227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO X 1228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO X 1229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO X 1230 DBREF 4CKV X 132 225 UNP P17948 VGFR1_HUMAN 132 225 SEQRES 1 X 94 GLY ARG PRO PHE VAL GLU MET TYR SER GLU ILE PRO GLU SEQRES 2 X 94 ILE ILE HIS MET THR GLU GLY ARG GLU LEU VAL ILE PRO SEQRES 3 X 94 CYS ARG VAL THR SER PRO ASN ILE THR VAL THR LEU LYS SEQRES 4 X 94 LYS PHE PRO LEU ASP THR LEU ILE PRO ASP GLY LYS ARG SEQRES 5 X 94 ILE ILE TRP ASP SER ARG LYS GLY PHE ILE ILE SER ASN SEQRES 6 X 94 ALA THR TYR LYS GLU ILE GLY LEU LEU THR CYS GLU ALA SEQRES 7 X 94 THR VAL ASN GLY HIS LEU TYR LYS THR ASN TYR LEU THR SEQRES 8 X 94 HIS ARG GLN HET ZN X1226 1 HET EDO X1227 4 HET EDO X1228 4 HET EDO X1229 4 HET EDO X1230 4 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN ZN 2+ FORMUL 3 EDO 4(C2 H6 O2) FORMUL 7 HOH *81(H2 O) HELIX 1 1 THR X 198 ILE X 202 5 5 SHEET 1 XA 5 GLU X 144 MET X 148 0 SHEET 2 XA 5 HIS X 214 ARG X 224 1 O ASN X 219 N GLU X 144 SHEET 3 XA 5 GLY X 203 VAL X 211 -1 O GLY X 203 N THR X 222 SHEET 4 XA 5 VAL X 167 LYS X 171 -1 O THR X 168 N GLU X 208 SHEET 5 XA 5 ASP X 175 LEU X 177 -1 O ASP X 175 N LYS X 171 SHEET 1 XB 3 LEU X 154 ILE X 156 0 SHEET 2 XB 3 GLY X 191 ILE X 194 -1 O PHE X 192 N ILE X 156 SHEET 3 XB 3 ILE X 184 ASP X 187 -1 O ILE X 185 N ILE X 193 SSBOND 1 CYS X 158 CYS X 207 1555 1555 2.07 LINK NE2 HIS X 147 ZN ZN X1226 1555 1555 2.34 LINK NE2 HIS X 147 ZN ZN X1226 3555 1555 2.34 LINK NE2 HIS X 223 ZN ZN X1226 1555 1555 2.19 LINK NE2 HIS X 223 ZN ZN X1226 3555 1555 2.19 CISPEP 1 PHE X 172 PRO X 173 0 -3.56 SITE 1 AC1 2 HIS X 147 HIS X 223 SITE 1 AC2 6 PRO X 179 ASP X 180 THR X 210 ASN X 212 SITE 2 AC2 6 GLY X 213 EDO X1230 SITE 1 AC3 5 THR X 161 THR X 166 THR X 210 HOH X2034 SITE 2 AC3 5 HOH X2042 SITE 1 AC4 2 ARG X 152 GLU X 153 SITE 1 AC5 7 ASN X 164 ILE X 165 THR X 166 ILE X 178 SITE 2 AC5 7 THR X 210 EDO X1227 HOH X2056 CRYST1 95.730 102.390 27.470 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010446 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009767 0.000000 0.00000 SCALE3 0.000000 0.000000 0.036403 0.00000