HEADER TRANSFERASE 16-JAN-14 4CMD TITLE THE (R)-SELECTIVE TRANSAMINASE FROM NECTRIA HAEMATOCOCCA COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.6.1.42; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: SCHIFF BASE BETEWEEN LYS179 AND PLP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NECTRIA HAEMATOCOCCA MPVI; SOURCE 3 ORGANISM_TAXID: 70791; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.SAYER,M.ISUPOV,R.J.MARTINEZ-TORRES,N.RICHTER,H.C.HAILES,J.WARD, AUTHOR 2 J.LITTLECHILD REVDAT 3 20-DEC-23 4CMD 1 REMARK LINK REVDAT 2 14-MAY-14 4CMD 1 JRNL REVDAT 1 26-MAR-14 4CMD 0 JRNL AUTH C.SAYER,R.J.MARTINEZ-TORRES,N.RICHTER,M.N.ISUPOV,H.C.HAILES, JRNL AUTH 2 J.A.LITTLECHILD,J.M.WARD JRNL TITL THE SUBSTRATE SPECIFICITY, ENANTIOSELECTIVITY AND STRUCTURE JRNL TITL 2 OF THE (R)-SELECTIVE AMINE:PYRUVATE TRANSAMINASE FROM JRNL TITL 3 NECTRIA HAEMATOCOCCA. JRNL REF FEBS J. V. 281 2240 2014 JRNL REFN ISSN 1742-464X JRNL PMID 24618038 JRNL DOI 10.1111/FEBS.12778 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 93564 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4941 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.73 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6535 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE SET COUNT : 337 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5096 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 1085 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.48000 REMARK 3 B22 (A**2) : 2.21000 REMARK 3 B33 (A**2) : -1.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.086 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.232 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5734 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7883 ; 1.386 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 779 ; 5.347 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 263 ;30.157 ;23.460 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1046 ;13.142 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;17.235 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 873 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4394 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2717 ; 2.763 ; 4.396 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3429 ; 3.670 ; 7.357 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3017 ; 3.696 ; 5.073 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4CMD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1290059436. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93564 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 29.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.84000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1WRV REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 53.03100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.94700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.03100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.94700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2108 O HOH B 2119 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2424 O HOH B 2424 2755 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 2 -18.62 -149.97 REMARK 500 HIS A 53 25.06 -140.88 REMARK 500 SER A 54 45.52 38.91 REMARK 500 ASP A 207 29.86 -142.06 REMARK 500 THR A 211 -98.80 -114.89 REMARK 500 LYS A 290 -112.17 48.77 REMARK 500 LYS A 290 -115.50 53.69 REMARK 500 ALA B 2 6.49 -168.67 REMARK 500 HIS B 53 26.34 -141.91 REMARK 500 SER B 54 44.34 37.28 REMARK 500 ASP B 207 28.21 -142.13 REMARK 500 THR B 211 -97.20 -117.29 REMARK 500 LYS B 290 -114.82 49.60 REMARK 500 LYS B 290 -112.70 46.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2013 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A2037 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A2140 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A2148 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A2316 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH A2594 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A2595 DISTANCE = 7.73 ANGSTROMS REMARK 525 HOH B2018 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH B2093 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH B2127 DISTANCE = 6.61 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 1179 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP B 1179 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 350 DBREF 4CMD A 1 320 UNP C7YVL8 C7YVL8_NECH7 1 320 DBREF 4CMD B 1 320 UNP C7YVL8 C7YVL8_NECH7 1 320 SEQADV 4CMD LEU A 321 UNP C7YVL8 EXPRESSION TAG SEQADV 4CMD GLU A 322 UNP C7YVL8 EXPRESSION TAG SEQADV 4CMD LEU B 321 UNP C7YVL8 EXPRESSION TAG SEQADV 4CMD GLU B 322 UNP C7YVL8 EXPRESSION TAG SEQRES 1 A 322 MET ALA THR MET ASP LYS VAL PHE ALA GLY TYR ALA GLU SEQRES 2 A 322 ARG GLN ALA VAL LEU GLU ALA SER LYS ASN PRO LEU ALA SEQRES 3 A 322 LYS GLY VAL ALA TRP ILE GLN GLY GLU LEU VAL PRO LEU SEQRES 4 A 322 HIS GLU ALA ARG ILE PRO LEU LEU ASP GLN GLY PHE MET SEQRES 5 A 322 HIS SER ASP LEU THR TYR ASP VAL PRO SER VAL TRP ASP SEQRES 6 A 322 GLY ARG PHE PHE ARG LEU GLU ASP HIS LEU ASN ARG LEU SEQRES 7 A 322 GLU ALA SER CYS LYS LYS MET ARG LEU ARG MET PRO LEU SEQRES 8 A 322 PRO ARG GLU GLU VAL ILE LYS THR LEU VAL ASP MET VAL SEQRES 9 A 322 ALA LYS SER GLY ILE ARG ASP ALA PHE VAL GLU LEU ILE SEQRES 10 A 322 VAL THR ARG GLY LEU THR GLY VAL ARG GLY ALA LYS PRO SEQRES 11 A 322 GLU GLU LEU LEU ASN ASN ASN LEU TYR MET PHE ILE GLN SEQRES 12 A 322 PRO TYR VAL TRP VAL MET ASP PRO ASP VAL GLN TYR THR SEQRES 13 A 322 GLY GLY ARG ALA ILE VAL ALA ARG THR VAL ARG ARG VAL SEQRES 14 A 322 PRO PRO GLY SER ILE ASP PRO THR ILE LYS ASN LEU GLN SEQRES 15 A 322 TRP GLY ASP LEU VAL ARG GLY LEU PHE GLU ALA ASN ASP SEQRES 16 A 322 ARG GLY ALA THR TYR PRO PHE LEU THR ASP GLY ASP ALA SEQRES 17 A 322 ASN LEU THR GLU GLY SER GLY PHE ASN VAL VAL LEU ILE SEQRES 18 A 322 LYS ASP GLY VAL LEU TYR THR PRO ASP ARG GLY VAL LEU SEQRES 19 A 322 GLN GLY ILE THR ARG LYS SER VAL ILE ASP ALA ALA ARG SEQRES 20 A 322 SER CYS GLY TYR GLU ILE ARG VAL GLU HIS VAL PRO ILE SEQRES 21 A 322 GLU ALA THR TYR GLN ALA ASP GLU ILE LEU MET CYS THR SEQRES 22 A 322 THR ALA GLY GLY ILE MET PRO ILE THR THR LEU ASP ASP SEQRES 23 A 322 LYS PRO VAL LYS ASP GLY LYS VAL GLY PRO ILE THR LYS SEQRES 24 A 322 ALA ILE TRP ASP ARG TYR TRP ALA MET HIS TRP GLU ASP SEQRES 25 A 322 GLU PHE SER PHE LYS ILE ASN TYR LEU GLU SEQRES 1 B 322 MET ALA THR MET ASP LYS VAL PHE ALA GLY TYR ALA GLU SEQRES 2 B 322 ARG GLN ALA VAL LEU GLU ALA SER LYS ASN PRO LEU ALA SEQRES 3 B 322 LYS GLY VAL ALA TRP ILE GLN GLY GLU LEU VAL PRO LEU SEQRES 4 B 322 HIS GLU ALA ARG ILE PRO LEU LEU ASP GLN GLY PHE MET SEQRES 5 B 322 HIS SER ASP LEU THR TYR ASP VAL PRO SER VAL TRP ASP SEQRES 6 B 322 GLY ARG PHE PHE ARG LEU GLU ASP HIS LEU ASN ARG LEU SEQRES 7 B 322 GLU ALA SER CYS LYS LYS MET ARG LEU ARG MET PRO LEU SEQRES 8 B 322 PRO ARG GLU GLU VAL ILE LYS THR LEU VAL ASP MET VAL SEQRES 9 B 322 ALA LYS SER GLY ILE ARG ASP ALA PHE VAL GLU LEU ILE SEQRES 10 B 322 VAL THR ARG GLY LEU THR GLY VAL ARG GLY ALA LYS PRO SEQRES 11 B 322 GLU GLU LEU LEU ASN ASN ASN LEU TYR MET PHE ILE GLN SEQRES 12 B 322 PRO TYR VAL TRP VAL MET ASP PRO ASP VAL GLN TYR THR SEQRES 13 B 322 GLY GLY ARG ALA ILE VAL ALA ARG THR VAL ARG ARG VAL SEQRES 14 B 322 PRO PRO GLY SER ILE ASP PRO THR ILE LYS ASN LEU GLN SEQRES 15 B 322 TRP GLY ASP LEU VAL ARG GLY LEU PHE GLU ALA ASN ASP SEQRES 16 B 322 ARG GLY ALA THR TYR PRO PHE LEU THR ASP GLY ASP ALA SEQRES 17 B 322 ASN LEU THR GLU GLY SER GLY PHE ASN VAL VAL LEU ILE SEQRES 18 B 322 LYS ASP GLY VAL LEU TYR THR PRO ASP ARG GLY VAL LEU SEQRES 19 B 322 GLN GLY ILE THR ARG LYS SER VAL ILE ASP ALA ALA ARG SEQRES 20 B 322 SER CYS GLY TYR GLU ILE ARG VAL GLU HIS VAL PRO ILE SEQRES 21 B 322 GLU ALA THR TYR GLN ALA ASP GLU ILE LEU MET CYS THR SEQRES 22 B 322 THR ALA GLY GLY ILE MET PRO ILE THR THR LEU ASP ASP SEQRES 23 B 322 LYS PRO VAL LYS ASP GLY LYS VAL GLY PRO ILE THR LYS SEQRES 24 B 322 ALA ILE TRP ASP ARG TYR TRP ALA MET HIS TRP GLU ASP SEQRES 25 B 322 GLU PHE SER PHE LYS ILE ASN TYR LEU GLU HET MES A 350 12 HET PLP A1179 15 HET MES B 350 12 HET PLP B1179 15 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 3 MES 2(C6 H13 N O4 S) FORMUL 4 PLP 2(C8 H10 N O6 P) FORMUL 7 HOH *1085(H2 O) HELIX 1 1 THR A 3 SER A 21 1 19 HELIX 2 2 ASN A 23 LYS A 27 5 5 HELIX 3 3 ASP A 48 HIS A 53 1 6 HELIX 4 4 ARG A 70 MET A 85 1 16 HELIX 5 5 PRO A 92 GLY A 108 1 17 HELIX 6 6 LYS A 129 LEU A 133 5 5 HELIX 7 7 ASP A 150 TYR A 155 1 6 HELIX 8 8 TRP A 183 ARG A 196 1 14 HELIX 9 9 GLY A 236 GLY A 250 1 15 HELIX 10 10 ILE A 260 ALA A 266 1 7 HELIX 11 11 GLY A 295 MET A 308 1 14 HELIX 12 12 HIS A 309 GLU A 311 5 3 HELIX 13 13 THR B 3 SER B 21 1 19 HELIX 14 14 ASP B 48 HIS B 53 1 6 HELIX 15 15 ARG B 70 ARG B 86 1 17 HELIX 16 16 PRO B 92 GLY B 108 1 17 HELIX 17 17 LYS B 129 LEU B 133 5 5 HELIX 18 18 ASP B 150 GLY B 157 1 8 HELIX 19 19 TRP B 183 ARG B 196 1 14 HELIX 20 20 GLY B 236 CYS B 249 1 14 HELIX 21 21 ILE B 260 ALA B 266 1 7 HELIX 22 22 GLY B 295 MET B 308 1 14 HELIX 23 23 HIS B 309 GLU B 311 5 3 SHEET 1 AA 7 GLU A 35 PRO A 38 0 SHEET 2 AA 7 VAL A 29 ILE A 32 -1 O ALA A 30 N VAL A 37 SHEET 3 AA 7 ASN A 137 PRO A 144 -1 O MET A 140 N TRP A 31 SHEET 4 AA 7 ALA A 112 THR A 119 -1 O PHE A 113 N GLN A 143 SHEET 5 AA 7 SER A 62 TRP A 64 -1 O VAL A 63 N ALA A 112 SHEET 6 AA 7 ARG A 67 PHE A 69 -1 O ARG A 67 N TRP A 64 SHEET 7 AA 7 SER A 315 LYS A 317 -1 O PHE A 316 N PHE A 68 SHEET 1 AB 5 GLU A 35 PRO A 38 0 SHEET 2 AB 5 VAL A 29 ILE A 32 -1 O ALA A 30 N VAL A 37 SHEET 3 AB 5 ASN A 137 PRO A 144 -1 O MET A 140 N TRP A 31 SHEET 4 AB 5 ALA A 112 THR A 119 -1 O PHE A 113 N GLN A 143 SHEET 5 AB 5 LEU A 56 ASP A 59 -1 O THR A 57 N VAL A 118 SHEET 1 AC 2 ARG A 43 PRO A 45 0 SHEET 2 AC 2 ARG B 43 PRO B 45 -1 O ILE B 44 N ILE A 44 SHEET 1 AD 5 LEU A 210 GLY A 213 0 SHEET 2 AD 5 TYR A 200 THR A 204 -1 O LEU A 203 N THR A 211 SHEET 3 AD 5 GLY A 158 VAL A 162 1 O ILE A 161 N PHE A 202 SHEET 4 AD 5 GLY A 277 LEU A 284 1 O PRO A 280 N GLY A 158 SHEET 5 AD 5 LYS A 287 PRO A 288 -1 O LYS A 287 N LEU A 284 SHEET 1 AE 8 LEU A 210 GLY A 213 0 SHEET 2 AE 8 TYR A 200 THR A 204 -1 O LEU A 203 N THR A 211 SHEET 3 AE 8 GLY A 158 VAL A 162 1 O ILE A 161 N PHE A 202 SHEET 4 AE 8 GLY A 277 LEU A 284 1 O PRO A 280 N GLY A 158 SHEET 5 AE 8 GLU A 268 THR A 273 -1 O ILE A 269 N ILE A 281 SHEET 6 AE 8 ASN A 217 LYS A 222 -1 O ASN A 217 N CYS A 272 SHEET 7 AE 8 VAL A 225 THR A 228 -1 O VAL A 225 N LYS A 222 SHEET 8 AE 8 ILE A 253 VAL A 255 1 O ARG A 254 N THR A 228 SHEET 1 AF 2 LYS A 287 PRO A 288 0 SHEET 2 AF 2 GLY A 277 LEU A 284 -1 O LEU A 284 N LYS A 287 SHEET 1 BA 7 GLU B 35 PRO B 38 0 SHEET 2 BA 7 VAL B 29 ILE B 32 -1 O ALA B 30 N VAL B 37 SHEET 3 BA 7 ASN B 137 PRO B 144 -1 O MET B 140 N TRP B 31 SHEET 4 BA 7 ALA B 112 THR B 119 -1 O PHE B 113 N GLN B 143 SHEET 5 BA 7 SER B 62 TRP B 64 -1 O VAL B 63 N ALA B 112 SHEET 6 BA 7 ARG B 67 PHE B 69 -1 O ARG B 67 N TRP B 64 SHEET 7 BA 7 SER B 315 LYS B 317 -1 O PHE B 316 N PHE B 68 SHEET 1 BB 5 GLU B 35 PRO B 38 0 SHEET 2 BB 5 VAL B 29 ILE B 32 -1 O ALA B 30 N VAL B 37 SHEET 3 BB 5 ASN B 137 PRO B 144 -1 O MET B 140 N TRP B 31 SHEET 4 BB 5 ALA B 112 THR B 119 -1 O PHE B 113 N GLN B 143 SHEET 5 BB 5 LEU B 56 ASP B 59 -1 O THR B 57 N VAL B 118 SHEET 1 BC 5 LEU B 210 GLY B 213 0 SHEET 2 BC 5 TYR B 200 THR B 204 -1 O LEU B 203 N THR B 211 SHEET 3 BC 5 GLY B 158 VAL B 162 1 O ILE B 161 N PHE B 202 SHEET 4 BC 5 GLY B 277 LEU B 284 1 O PRO B 280 N GLY B 158 SHEET 5 BC 5 LYS B 287 PRO B 288 -1 O LYS B 287 N LEU B 284 SHEET 1 BD 8 LEU B 210 GLY B 213 0 SHEET 2 BD 8 TYR B 200 THR B 204 -1 O LEU B 203 N THR B 211 SHEET 3 BD 8 GLY B 158 VAL B 162 1 O ILE B 161 N PHE B 202 SHEET 4 BD 8 GLY B 277 LEU B 284 1 O PRO B 280 N GLY B 158 SHEET 5 BD 8 GLU B 268 THR B 273 -1 O ILE B 269 N ILE B 281 SHEET 6 BD 8 ASN B 217 LYS B 222 -1 O ASN B 217 N CYS B 272 SHEET 7 BD 8 VAL B 225 THR B 228 -1 O VAL B 225 N LYS B 222 SHEET 8 BD 8 GLU B 252 VAL B 255 1 O GLU B 252 N LEU B 226 SHEET 1 BE 2 LYS B 287 PRO B 288 0 SHEET 2 BE 2 GLY B 277 LEU B 284 -1 O LEU B 284 N LYS B 287 LINK NZ LYS A 179 C4A PLP A1179 1555 1555 1.46 LINK NZ LYS B 179 C4A PLP B1179 1555 1555 1.44 SITE 1 AC1 15 ARG A 77 LYS A 179 GLU A 212 GLY A 215 SITE 2 AC1 15 PHE A 216 LEU A 234 GLY A 236 ILE A 237 SITE 3 AC1 15 THR A 238 THR A 274 MES A 350 HOH A2210 SITE 4 AC1 15 HOH A2211 HOH A2438 HOH A2439 SITE 1 AC2 9 PHE A 113 VAL A 146 LYS A 179 GLY A 215 SITE 2 AC2 9 PLP A1179 HOH A2591 HOH A2593 HIS B 53 SITE 3 AC2 9 ARG B 126 SITE 1 AC3 17 TYR B 58 ARG B 77 LYS B 179 GLU B 212 SITE 2 AC3 17 GLY B 215 PHE B 216 LEU B 234 GLY B 236 SITE 3 AC3 17 ILE B 237 THR B 238 THR B 273 THR B 274 SITE 4 AC3 17 MES B 350 HOH B2137 HOH B2138 HOH B2335 SITE 5 AC3 17 HOH B2336 SITE 1 AC4 10 HIS A 53 ARG A 126 HOH A2185 HOH A2192 SITE 2 AC4 10 PHE B 113 VAL B 146 LYS B 179 GLY B 215 SITE 3 AC4 10 PLP B1179 HOH B2373 CRYST1 106.062 133.894 61.666 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009428 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007469 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016216 0.00000 MTRIX1 1 -0.350000 -0.937000 -0.002000 143.16023 1 MTRIX2 1 -0.937000 0.350000 0.004000 99.23195 1 MTRIX3 1 -0.003000 0.003000 -1.000000 65.34525 1