HEADER HYDROLASE 16-JAN-14 4CMN TITLE CRYSTAL STRUCTURE OF OCRL IN COMPLEX WITH A PHOSPHATE ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL POLYPHOSPHATE 5-PHOSPHATASE OCRL-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: 5-PHOSPHATASE CATALYTIC DOMAIN, RESIDUES 215-560; COMPND 5 SYNONYM: LOWE OCULOCEREBRORENAL SYNDROME PROTEIN, INOSITOL COMPND 6 POLYPHOSPHATE 5-PHOSPHATASE OCRL-1 ISOFORM 1; COMPND 7 EC: 3.1.3.36; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3 PRARE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-CH2; SOURCE 11 OTHER_DETAILS: MAMMALIAN GENE COLLECTION KEYWDS HYDROLASE, INOSITOL SIGNALLING, SGC STOCKHOLM, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, LOWE SYNDROME, DENT DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR L.TRESAUGUES,M.MOCHE,C.H.ARROWSMITH,H.BERGLUND,C.BOUNTRA,A.M.EDWARDS, AUTHOR 2 T.EKBLAD,S.FLODIN,S.GRASLUND,T.KARLBERG,T.NYMAN,H.SCHULER, AUTHOR 3 C.SILVANDER,A.G.THORSELL,J.WEIGELT,M.WELIN,P.NORDLUND REVDAT 3 20-DEC-23 4CMN 1 REMARK LINK REVDAT 2 21-MAY-14 4CMN 1 JRNL REVDAT 1 16-APR-14 4CMN 0 JRNL AUTH L.TRESAUGUES,C.SILVANDER,S.FLODIN,M.WELIN,T.NYMAN, JRNL AUTH 2 S.GRASLUND,M.HAMMARSTROM,H.BERGLUND,P.NORDLUND JRNL TITL STRUCTURAL BASIS FOR PHOSPHOINOSITIDE SUBSTRATE RECOGNITION, JRNL TITL 2 CATALYSIS, AND MEMBRANE INTERACTIONS IN HUMAN INOSITOL JRNL TITL 3 POLYPHOSPHATE 5-PHOSPHATASES. JRNL REF STRUCTURE V. 22 744 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 24704254 JRNL DOI 10.1016/J.STR.2014.01.013 REMARK 2 REMARK 2 RESOLUTION. 3.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 10030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9280 - 5.9853 1.00 1392 169 0.2402 0.2888 REMARK 3 2 5.9853 - 4.7520 1.00 1295 154 0.1856 0.2325 REMARK 3 3 4.7520 - 4.1516 1.00 1267 149 0.1687 0.2131 REMARK 3 4 4.1516 - 3.7722 1.00 1270 138 0.2016 0.2676 REMARK 3 5 3.7722 - 3.5019 1.00 1266 144 0.2151 0.2837 REMARK 3 6 3.5019 - 3.2955 1.00 1277 111 0.2181 0.2878 REMARK 3 7 3.2955 - 3.1305 1.00 1260 138 0.2449 0.3510 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 68.42 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 106.1 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2766 REMARK 3 ANGLE : 0.997 3748 REMARK 3 CHIRALITY : 0.062 406 REMARK 3 PLANARITY : 0.004 487 REMARK 3 DIHEDRAL : 15.241 991 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 217:306) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8051 35.3749 -31.3425 REMARK 3 T TENSOR REMARK 3 T11: 0.5804 T22: 1.2481 REMARK 3 T33: 0.5022 T12: -0.2098 REMARK 3 T13: 0.1158 T23: -0.2746 REMARK 3 L TENSOR REMARK 3 L11: 3.1305 L22: 3.6415 REMARK 3 L33: 0.5317 L12: -0.1065 REMARK 3 L13: -1.3576 L23: -1.7852 REMARK 3 S TENSOR REMARK 3 S11: -0.0248 S12: 0.0778 S13: 0.1415 REMARK 3 S21: 0.0606 S22: 0.2999 S23: 0.6658 REMARK 3 S31: -0.0487 S32: -0.0135 S33: -0.1051 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 307:379) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0655 32.9778 -27.3381 REMARK 3 T TENSOR REMARK 3 T11: 0.4028 T22: 1.5453 REMARK 3 T33: 0.7308 T12: -0.2238 REMARK 3 T13: 0.3581 T23: -0.3775 REMARK 3 L TENSOR REMARK 3 L11: 2.9902 L22: 5.1587 REMARK 3 L33: 1.0741 L12: -0.8981 REMARK 3 L13: 0.5601 L23: -0.4247 REMARK 3 S TENSOR REMARK 3 S11: -0.3608 S12: -0.1370 S13: -0.4140 REMARK 3 S21: -0.0407 S22: 1.0069 S23: -1.0277 REMARK 3 S31: 0.3678 S32: 0.9066 S33: 0.0749 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 380:411) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0763 31.0453 -12.8437 REMARK 3 T TENSOR REMARK 3 T11: 0.8478 T22: 1.8251 REMARK 3 T33: 0.9303 T12: 0.3619 REMARK 3 T13: -0.1425 T23: -0.1169 REMARK 3 L TENSOR REMARK 3 L11: 3.3924 L22: 6.4146 REMARK 3 L33: 1.7297 L12: 0.5525 REMARK 3 L13: -2.0850 L23: -1.3244 REMARK 3 S TENSOR REMARK 3 S11: -0.0611 S12: -0.5303 S13: -0.9672 REMARK 3 S21: 1.1634 S22: 0.8965 S23: -1.5475 REMARK 3 S31: 0.8711 S32: 0.9407 S33: 0.3975 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 412:480) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7291 38.8463 -13.2044 REMARK 3 T TENSOR REMARK 3 T11: 0.5384 T22: 1.1876 REMARK 3 T33: 0.7012 T12: 0.0401 REMARK 3 T13: 0.3600 T23: -0.2335 REMARK 3 L TENSOR REMARK 3 L11: 4.5559 L22: 3.1484 REMARK 3 L33: 4.1484 L12: -0.6204 REMARK 3 L13: -1.5190 L23: -1.4778 REMARK 3 S TENSOR REMARK 3 S11: -0.1389 S12: 0.3631 S13: -0.2085 REMARK 3 S21: 1.1679 S22: 0.5488 S23: 0.6010 REMARK 3 S31: -0.5305 S32: 0.1462 S33: -0.1810 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 481:541) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3246 39.0610 -24.0590 REMARK 3 T TENSOR REMARK 3 T11: 0.6324 T22: 1.3231 REMARK 3 T33: 0.8273 T12: -0.1143 REMARK 3 T13: 0.1043 T23: -0.1378 REMARK 3 L TENSOR REMARK 3 L11: 2.1431 L22: 1.9134 REMARK 3 L33: 0.9994 L12: -0.1115 REMARK 3 L13: -0.9689 L23: -1.1421 REMARK 3 S TENSOR REMARK 3 S11: -0.0448 S12: 0.2391 S13: -0.2216 REMARK 3 S21: 0.2950 S22: 0.4591 S23: 0.7403 REMARK 3 S31: 0.1409 S32: -0.0007 S33: -0.1634 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 542:559) REMARK 3 ORIGIN FOR THE GROUP (A): 28.2081 58.3513 -33.8091 REMARK 3 T TENSOR REMARK 3 T11: 0.3976 T22: 1.5783 REMARK 3 T33: 0.7795 T12: -0.4261 REMARK 3 T13: 0.7007 T23: -0.1790 REMARK 3 L TENSOR REMARK 3 L11: 0.1387 L22: 2.0260 REMARK 3 L33: 5.3378 L12: 0.6906 REMARK 3 L13: -0.7031 L23: -0.2655 REMARK 3 S TENSOR REMARK 3 S11: -0.1805 S12: 0.5226 S13: -0.6391 REMARK 3 S21: 0.0945 S22: 0.1946 S23: -1.6128 REMARK 3 S31: 1.0041 S32: -0.6737 S33: 0.0333 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CMN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1290059486. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10068 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.130 REMARK 200 RESOLUTION RANGE LOW (A) : 103.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 40.50 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 42.40 REMARK 200 R MERGE FOR SHELL (I) : 0.79000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3MTC REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M ZINC ACETATE, 0.1 M NA REMARK 280 -CACODYLATE PH 6.5, 10% ISOPROPANOL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 73.38300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.38300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 73.38300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.38300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 73.38300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 73.38300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 73.38300 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 73.38300 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 73.38300 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 73.38300 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 73.38300 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 73.38300 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 73.38300 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 73.38300 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 73.38300 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 73.38300 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 73.38300 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 73.38300 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 110.07450 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 36.69150 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 36.69150 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 110.07450 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 110.07450 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 110.07450 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 36.69150 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 36.69150 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 110.07450 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 36.69150 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 110.07450 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 36.69150 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 110.07450 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 36.69150 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 36.69150 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 36.69150 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 110.07450 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 36.69150 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 110.07450 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 110.07450 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 110.07450 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 36.69150 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 36.69150 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 110.07450 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 110.07450 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 36.69150 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 36.69150 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 36.69150 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 36.69150 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 110.07450 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 36.69150 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 110.07450 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 36.69150 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 110.07450 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 110.07450 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 110.07450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 214 REMARK 465 GLN A 215 REMARK 465 SER A 216 REMARK 465 GLY A 217 REMARK 465 GLN A 218 REMARK 465 GLN A 404 REMARK 465 THR A 405 REMARK 465 ASP A 560 REMARK 465 ALA A 561 REMARK 465 HIS A 562 REMARK 465 HIS A 563 REMARK 465 HIS A 564 REMARK 465 HIS A 565 REMARK 465 HIS A 566 REMARK 465 HIS A 567 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 219 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 GLU A 290 CG CD OE1 OE2 REMARK 470 LYS A 308 CD CE NZ REMARK 470 LYS A 310 CG CD CE NZ REMARK 470 LYS A 312 CG CD CE NZ REMARK 470 LYS A 330 CG CD CE NZ REMARK 470 LYS A 351 CG CD CE NZ REMARK 470 LYS A 391 CG CD CE NZ REMARK 470 ASN A 403 CG OD1 ND2 REMARK 470 LEU A 406 CG CD1 CD2 REMARK 470 LYS A 413 CG CD CE NZ REMARK 470 LYS A 436 CD CE NZ REMARK 470 LYS A 441 CG CD CE NZ REMARK 470 LYS A 442 CG CD CE NZ REMARK 470 ARG A 446 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 460 CD CE NZ REMARK 470 LYS A 461 CD CE NZ REMARK 470 LYS A 482 CD CE NZ REMARK 470 LYS A 525 CD CE NZ REMARK 470 LYS A 536 CG CD CE NZ REMARK 470 ARG A 542 CD NE CZ NH1 NH2 REMARK 470 LYS A 545 CG CD CE NZ REMARK 470 ARG A 552 CD NE CZ NH1 NH2 REMARK 470 ARG A 556 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 234 32.55 -140.83 REMARK 500 ASN A 263 44.19 -109.01 REMARK 500 ALA A 309 132.60 -172.74 REMARK 500 VAL A 320 -100.16 64.46 REMARK 500 HIS A 365 -131.82 53.48 REMARK 500 ASN A 366 47.30 -106.38 REMARK 500 HIS A 379 129.95 81.80 REMARK 500 ASP A 382 47.48 -91.53 REMARK 500 ASP A 431 103.04 -56.13 REMARK 500 LYS A 442 -14.67 81.83 REMARK 500 SER A 489 162.64 -49.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1561 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 250 OD1 REMARK 620 2 GLU A 278 OE1 91.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1560 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1561 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1562 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1563 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CML RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF INPP5B IN COMPLEX WITH PHOSPHATIDYLINOSITOL 3, REMARK 900 4-BISPHOSPHATE REMARK 999 REMARK 999 SEQUENCE REMARK 999 AN ALANINE FOLLOWED BY A HEXAHISTIDINE TAG WAS ADDED TO REMARK 999 THE C-TERMINUS. DBREF 4CMN A 215 560 UNP Q01968 OCRL_HUMAN 215 560 SEQADV 4CMN MET A 214 UNP Q01968 EXPRESSION TAG SEQADV 4CMN ALA A 561 UNP Q01968 EXPRESSION TAG SEQADV 4CMN HIS A 562 UNP Q01968 EXPRESSION TAG SEQADV 4CMN HIS A 563 UNP Q01968 EXPRESSION TAG SEQADV 4CMN HIS A 564 UNP Q01968 EXPRESSION TAG SEQADV 4CMN HIS A 565 UNP Q01968 EXPRESSION TAG SEQADV 4CMN HIS A 566 UNP Q01968 EXPRESSION TAG SEQADV 4CMN HIS A 567 UNP Q01968 EXPRESSION TAG SEQADV 4CMN GLY A 428 UNP Q01968 CYS 428 ENGINEERED MUTATION SEQRES 1 A 354 MET GLN SER GLY GLN ARG GLU GLY LEU ILE LYS HIS ILE SEQRES 2 A 354 LEU ALA LYS ARG GLU LYS GLU TYR VAL ASN ILE GLN THR SEQRES 3 A 354 PHE ARG PHE PHE VAL GLY THR TRP ASN VAL ASN GLY GLN SEQRES 4 A 354 SER PRO ASP SER GLY LEU GLU PRO TRP LEU ASN CYS ASP SEQRES 5 A 354 PRO ASN PRO PRO ASP ILE TYR CYS ILE GLY PHE GLN GLU SEQRES 6 A 354 LEU ASP LEU SER THR GLU ALA PHE PHE TYR PHE GLU SER SEQRES 7 A 354 VAL LYS GLU GLN GLU TRP SER MET ALA VAL GLU ARG GLY SEQRES 8 A 354 LEU HIS SER LYS ALA LYS TYR LYS LYS VAL GLN LEU VAL SEQRES 9 A 354 ARG LEU VAL GLY MET MET LEU LEU ILE PHE ALA ARG LYS SEQRES 10 A 354 ASP GLN CYS ARG TYR ILE ARG ASP ILE ALA THR GLU THR SEQRES 11 A 354 VAL GLY THR GLY ILE MET GLY LYS MET GLY ASN LYS GLY SEQRES 12 A 354 GLY VAL ALA VAL ARG PHE VAL PHE HIS ASN THR THR PHE SEQRES 13 A 354 CYS ILE VAL ASN SER HIS LEU ALA ALA HIS VAL GLU ASP SEQRES 14 A 354 PHE GLU ARG ARG ASN GLN ASP TYR LYS ASP ILE CYS ALA SEQRES 15 A 354 ARG MET SER PHE VAL VAL PRO ASN GLN THR LEU PRO GLN SEQRES 16 A 354 LEU ASN ILE MET LYS HIS GLU VAL VAL ILE TRP LEU GLY SEQRES 17 A 354 ASP LEU ASN TYR ARG LEU GLY MET PRO ASP ALA ASN GLU SEQRES 18 A 354 VAL LYS SER LEU ILE ASN LYS LYS ASP LEU GLN ARG LEU SEQRES 19 A 354 LEU LYS PHE ASP GLN LEU ASN ILE GLN ARG THR GLN LYS SEQRES 20 A 354 LYS ALA PHE VAL ASP PHE ASN GLU GLY GLU ILE LYS PHE SEQRES 21 A 354 ILE PRO THR TYR LYS TYR ASP SER LYS THR ASP ARG TRP SEQRES 22 A 354 ASP SER SER GLY LYS CYS ARG VAL PRO ALA TRP CYS ASP SEQRES 23 A 354 ARG ILE LEU TRP ARG GLY THR ASN VAL ASN GLN LEU ASN SEQRES 24 A 354 TYR ARG SER HIS MET GLU LEU LYS THR SER ASP HIS LYS SEQRES 25 A 354 PRO VAL SER ALA LEU PHE HIS ILE GLY VAL LYS VAL VAL SEQRES 26 A 354 ASP GLU ARG ARG TYR ARG LYS VAL PHE GLU ASP SER VAL SEQRES 27 A 354 ARG ILE MET ASP ARG MET GLU ASN ASP ALA HIS HIS HIS SEQRES 28 A 354 HIS HIS HIS HET PO4 A1560 5 HET MG A1561 1 HET GOL A1562 6 HET GOL A1563 6 HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PO4 O4 P 3- FORMUL 3 MG MG 2+ FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *4(H2 O) HELIX 1 1 GLY A 221 ARG A 230 1 10 HELIX 2 2 GLU A 231 GLU A 233 5 3 HELIX 3 3 LEU A 258 ASN A 263 1 6 HELIX 4 4 SER A 282 PHE A 287 1 6 HELIX 5 5 SER A 291 LEU A 305 1 15 HELIX 6 6 ASP A 331 ARG A 334 5 4 HELIX 7 7 GLY A 347 LYS A 351 5 5 HELIX 8 8 ASP A 382 MET A 397 1 16 HELIX 9 9 MET A 412 HIS A 414 5 3 HELIX 10 10 ASP A 431 LYS A 441 1 11 HELIX 11 11 ASP A 443 LYS A 449 1 7 HELIX 12 12 ASP A 451 GLN A 459 1 9 HELIX 13 13 ASP A 539 MET A 557 1 19 SHEET 1 AA 6 TYR A 311 LEU A 319 0 SHEET 2 AA 6 MET A 322 ARG A 329 -1 O MET A 322 N LEU A 319 SHEET 3 AA 6 ILE A 271 GLN A 277 -1 O TYR A 272 N PHE A 327 SHEET 4 AA 6 VAL A 235 ASN A 248 1 O PHE A 243 N CYS A 273 SHEET 5 AA 6 VAL A 527 VAL A 538 -1 O VAL A 527 N THR A 246 SHEET 6 AA 6 ARG A 514 SER A 515 -1 O ARG A 514 N SER A 528 SHEET 1 AB 6 TYR A 311 LEU A 319 0 SHEET 2 AB 6 MET A 322 ARG A 329 -1 O MET A 322 N LEU A 319 SHEET 3 AB 6 ILE A 271 GLN A 277 -1 O TYR A 272 N PHE A 327 SHEET 4 AB 6 VAL A 235 ASN A 248 1 O PHE A 243 N CYS A 273 SHEET 5 AB 6 VAL A 527 VAL A 538 -1 O VAL A 527 N THR A 246 SHEET 6 AB 6 VAL A 508 GLN A 510 -1 O ASN A 509 N HIS A 532 SHEET 1 AC 2 ARG A 514 SER A 515 0 SHEET 2 AC 2 VAL A 527 VAL A 538 -1 O SER A 528 N ARG A 514 SHEET 1 AD 5 ILE A 336 GLY A 345 0 SHEET 2 AD 5 GLY A 356 PHE A 364 -1 O GLY A 357 N VAL A 344 SHEET 3 AD 5 THR A 367 HIS A 375 -1 O THR A 367 N PHE A 364 SHEET 4 AD 5 VAL A 416 ASP A 422 1 O VAL A 416 N CYS A 370 SHEET 5 AD 5 ASP A 499 ARG A 504 -1 O ARG A 500 N GLY A 421 SHEET 1 AE 2 SER A 398 PHE A 399 0 SHEET 2 AE 2 LEU A 409 ASN A 410 -1 O LEU A 409 N PHE A 399 LINK OD1 ASN A 250 MG MG A1561 1555 1555 2.69 LINK OE1 GLU A 278 MG MG A1561 1555 1555 2.31 CISPEP 1 VAL A 401 PRO A 402 0 -2.36 CISPEP 2 VAL A 464 ASP A 465 0 -8.04 CISPEP 3 TYR A 477 LYS A 478 0 -6.76 SITE 1 AC1 7 ASN A 248 GLU A 278 TYR A 477 ASP A 523 SITE 2 AC1 7 HIS A 524 MG A1561 HOH A2002 SITE 1 AC2 3 ASN A 250 GLU A 278 PO4 A1560 SITE 1 AC3 4 LYS A 229 ASN A 354 LYS A 355 HIS A 379 SITE 1 AC4 3 ASN A 454 ARG A 457 THR A 458 CRYST1 146.766 146.766 146.766 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006814 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006814 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006814 0.00000