HEADER HYDROLASE 18-JAN-14 4CMW TITLE CRYSTAL STRUCTURE OF RV3378C COMPND MOL_ID: 1; COMPND 2 MOLECULE: DITERPENE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ISOTUBERCULOSINOL SYNTHASE, NOSYBERKOL SYNTHASE, COMPND 5 TUBERCULOSINOL SYNTHASE, RV3378C; COMPND 6 EC: 3.1.7.9, 3.1.7.8; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS HYDROLASE, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.LAYRE,H.J.LEE,D.C.YOUNG,A.J.MARTINOT,J.BUTER,A.J.MINNAARD, AUTHOR 2 J.W.ANNAND,S.M.FORTUNE,B.B.SNIDER,I.MATSUNAGA,E.J.RUBIN,T.ALBER, AUTHOR 3 D.B.MOODY REVDAT 3 20-DEC-23 4CMW 1 REMARK REVDAT 2 12-MAR-14 4CMW 1 JRNL REVDAT 1 19-FEB-14 4CMW 0 JRNL AUTH E.LAYRE,H.J.LEE,D.C.YOUNG,A.JEZEK MARTINOT,J.BUTER, JRNL AUTH 2 A.J.MINNAARD,J.W.ANNAND,S.M.FORTUNE,B.B.SNIDER,I.MATSUNAGA, JRNL AUTH 3 E.J.RUBIN,T.ALBER,D.B.MOODY JRNL TITL MOLECULAR PROFILING OF MYCOBACTERIUM TUBERCULOSIS IDENTIFIES JRNL TITL 2 TUBERCULOSINYL NUCLEOSIDE PRODUCTS OF THE JRNL TITL 3 VIRULENCE-ASSOCIATED ENZYME RV3378C. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 2978 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 24516143 JRNL DOI 10.1073/PNAS.1315883111 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 37194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.1409 - 5.3187 1.00 2689 146 0.1958 0.2006 REMARK 3 2 5.3187 - 4.2236 1.00 2590 146 0.1428 0.2044 REMARK 3 3 4.2236 - 3.6902 1.00 2539 146 0.1512 0.1982 REMARK 3 4 3.6902 - 3.3531 1.00 2525 142 0.1584 0.2366 REMARK 3 5 3.3531 - 3.1129 1.00 2540 140 0.1712 0.2318 REMARK 3 6 3.1129 - 2.9294 1.00 2503 145 0.1791 0.2190 REMARK 3 7 2.9294 - 2.7828 1.00 2523 144 0.1756 0.2145 REMARK 3 8 2.7828 - 2.6617 1.00 2473 136 0.1862 0.2529 REMARK 3 9 2.6617 - 2.5592 1.00 2513 150 0.1895 0.2451 REMARK 3 10 2.5592 - 2.4709 1.00 2493 139 0.2030 0.2776 REMARK 3 11 2.4709 - 2.3937 1.00 2504 134 0.2045 0.3105 REMARK 3 12 2.3937 - 2.3253 1.00 2479 139 0.2126 0.2857 REMARK 3 13 2.3253 - 2.2641 1.00 2476 153 0.2370 0.3026 REMARK 3 14 2.2641 - 2.2088 0.95 2357 130 0.2579 0.3338 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4934 REMARK 3 ANGLE : 1.171 6697 REMARK 3 CHIRALITY : 0.083 709 REMARK 3 PLANARITY : 0.005 870 REMARK 3 DIHEDRAL : 13.182 1831 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 2 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7848 10.7609 19.1016 REMARK 3 T TENSOR REMARK 3 T11: 0.1540 T22: 0.2312 REMARK 3 T33: 0.2501 T12: -0.0171 REMARK 3 T13: 0.0283 T23: -0.0673 REMARK 3 L TENSOR REMARK 3 L11: 4.0543 L22: 4.9802 REMARK 3 L33: 2.3484 L12: 0.3476 REMARK 3 L13: 0.7838 L23: 1.7052 REMARK 3 S TENSOR REMARK 3 S11: -0.1971 S12: 0.1703 S13: 0.1723 REMARK 3 S21: -0.4696 S22: 0.4004 S23: -0.6723 REMARK 3 S31: -0.0173 S32: 0.4078 S33: -0.2053 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 70 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3879 15.0546 4.4621 REMARK 3 T TENSOR REMARK 3 T11: 0.1823 T22: 0.2104 REMARK 3 T33: 0.1734 T12: -0.0255 REMARK 3 T13: 0.0546 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 4.0516 L22: 4.2743 REMARK 3 L33: 5.2598 L12: -0.3964 REMARK 3 L13: -0.6246 L23: -2.1250 REMARK 3 S TENSOR REMARK 3 S11: 0.1493 S12: 0.4045 S13: 0.2424 REMARK 3 S21: -0.1296 S22: -0.1239 S23: -0.0159 REMARK 3 S31: -0.3181 S32: 0.1857 S33: -0.0259 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 166 THROUGH 236 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0090 16.6516 15.9970 REMARK 3 T TENSOR REMARK 3 T11: 0.1754 T22: 0.1029 REMARK 3 T33: 0.1319 T12: 0.0008 REMARK 3 T13: 0.0306 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 4.8209 L22: 1.6475 REMARK 3 L33: 3.2809 L12: -0.5756 REMARK 3 L13: 2.3654 L23: 0.3401 REMARK 3 S TENSOR REMARK 3 S11: 0.0731 S12: 0.1072 S13: -0.0716 REMARK 3 S21: -0.1694 S22: -0.0388 S23: -0.0387 REMARK 3 S31: 0.0101 S32: -0.1664 S33: -0.0201 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 237 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2059 17.4993 39.9276 REMARK 3 T TENSOR REMARK 3 T11: 0.3588 T22: 0.3315 REMARK 3 T33: 0.3364 T12: 0.0502 REMARK 3 T13: -0.1112 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 1.0804 L22: 3.6223 REMARK 3 L33: 3.9057 L12: -1.0143 REMARK 3 L13: 0.6909 L23: 1.9018 REMARK 3 S TENSOR REMARK 3 S11: -0.1363 S12: -0.4830 S13: -0.0375 REMARK 3 S21: 0.8480 S22: 0.1815 S23: -0.1073 REMARK 3 S31: 0.4792 S32: -0.0780 S33: -0.0024 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESID 3 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2231 32.5763 40.6918 REMARK 3 T TENSOR REMARK 3 T11: 0.4360 T22: 0.2587 REMARK 3 T33: 0.2070 T12: -0.0062 REMARK 3 T13: -0.0104 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 3.7858 L22: 2.3149 REMARK 3 L33: 3.9304 L12: -0.4500 REMARK 3 L13: 0.6778 L23: 0.2649 REMARK 3 S TENSOR REMARK 3 S11: 0.0768 S12: -0.6149 S13: -0.2727 REMARK 3 S21: 0.6441 S22: -0.0021 S23: -0.0092 REMARK 3 S31: 0.3800 S32: -0.2659 S33: -0.0309 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESID 91 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0231 29.9168 34.3511 REMARK 3 T TENSOR REMARK 3 T11: 0.2216 T22: 0.2843 REMARK 3 T33: 0.1648 T12: -0.0046 REMARK 3 T13: 0.0255 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 5.2240 L22: 4.3300 REMARK 3 L33: 5.1656 L12: 2.1107 REMARK 3 L13: -1.5993 L23: 0.7443 REMARK 3 S TENSOR REMARK 3 S11: -0.0714 S12: -0.2073 S13: 0.0618 REMARK 3 S21: 0.4655 S22: -0.0256 S23: 0.4717 REMARK 3 S31: 0.3392 S32: -0.7125 S33: 0.0692 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESID 166 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5374 29.5235 25.0115 REMARK 3 T TENSOR REMARK 3 T11: 0.1929 T22: 0.1424 REMARK 3 T33: 0.1103 T12: -0.0187 REMARK 3 T13: 0.0358 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 3.2596 L22: 1.5643 REMARK 3 L33: 1.7890 L12: -0.0987 REMARK 3 L13: 1.5847 L23: 0.6310 REMARK 3 S TENSOR REMARK 3 S11: -0.0057 S12: 0.0627 S13: 0.1823 REMARK 3 S21: 0.1496 S22: -0.0646 S23: -0.0690 REMARK 3 S31: -0.0818 S32: -0.0478 S33: 0.0588 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESID 250 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2459 24.1662 29.0215 REMARK 3 T TENSOR REMARK 3 T11: 0.2959 T22: 0.3984 REMARK 3 T33: 0.5082 T12: -0.0296 REMARK 3 T13: -0.1343 T23: -0.0761 REMARK 3 L TENSOR REMARK 3 L11: 6.3023 L22: 4.2464 REMARK 3 L33: 2.3257 L12: 2.2427 REMARK 3 L13: -2.7204 L23: 0.7996 REMARK 3 S TENSOR REMARK 3 S11: 0.0878 S12: -0.5857 S13: 0.1757 REMARK 3 S21: 0.0002 S22: 0.0171 S23: -0.8989 REMARK 3 S31: 0.0673 S32: 1.0479 S33: -0.1643 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CMW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1290059504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1111 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL, SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37194 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.63000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4CMV REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.58250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.64200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.63100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.64200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.58250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.63100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 84 REMARK 465 ASP A 85 REMARK 465 ARG A 86 REMARK 465 GLY A 87 REMARK 465 ASP A 88 REMARK 465 ARG A 89 REMARK 465 TYR A 90 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ASP B 81 REMARK 465 ASP B 82 REMARK 465 LEU B 83 REMARK 465 LEU B 84 REMARK 465 ASP B 85 REMARK 465 ARG B 86 REMARK 465 GLN B 277 REMARK 465 PRO B 278 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2085 O HOH B 2137 2.10 REMARK 500 O HOH A 2029 O HOH A 2087 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2013 O HOH B 2085 3545 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 92 -66.46 51.23 REMARK 500 GLN A 93 -73.34 -127.91 REMARK 500 SER A 130 39.50 -86.70 REMARK 500 LEU A 217 -14.05 76.65 REMARK 500 SER B 130 39.33 -84.85 REMARK 500 LEU B 217 -18.09 76.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 94 LEU A 95 141.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1297 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1297 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 1300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CMV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RV3378C REMARK 900 RELATED ID: 4CMX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RV3378C REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 1 AND 84-90 ARE DISORDERED REMARK 999 RESIDUES 1-2, 81-86, AND 277-278 ARE DISORDERED DBREF 4CMW A 1 296 UNP O50407 TUBOL_MYCTU 1 296 DBREF 4CMW B 1 296 UNP O50407 TUBOL_MYCTU 1 296 SEQRES 1 A 296 MET ASN LEU VAL SER GLU LYS GLU PHE LEU ASP LEU PRO SEQRES 2 A 296 LEU VAL SER VAL ALA GLU ILE VAL ARG CYS ARG GLY PRO SEQRES 3 A 296 LYS VAL SER VAL PHE PRO PHE ASP GLY THR ARG ARG TRP SEQRES 4 A 296 PHE HIS LEU GLU CYS ASN PRO GLN TYR ASP ASP TYR GLN SEQRES 5 A 296 GLN ALA ALA LEU ARG GLN SER ILE ARG ILE LEU LYS MET SEQRES 6 A 296 LEU PHE GLU HIS GLY ILE GLU THR VAL ILE SER PRO ILE SEQRES 7 A 296 PHE SER ASP ASP LEU LEU ASP ARG GLY ASP ARG TYR ILE SEQRES 8 A 296 VAL GLN ALA LEU GLU GLY MET ALA LEU LEU ALA ASN ASP SEQRES 9 A 296 GLU GLU ILE LEU SER PHE TYR LYS GLU HIS GLU VAL HIS SEQRES 10 A 296 VAL LEU PHE TYR GLY ASP TYR LYS LYS ARG LEU PRO SER SEQRES 11 A 296 THR ALA GLN GLY ALA ALA VAL VAL LYS SER PHE ASP ASP SEQRES 12 A 296 LEU THR ILE SER THR SER SER ASN THR GLU HIS ARG LEU SEQRES 13 A 296 CYS PHE GLY VAL PHE GLY ASN ASP ALA ALA GLU SER VAL SEQRES 14 A 296 ALA GLN PHE SER ILE SER TRP ASN GLU THR HIS GLY LYS SEQRES 15 A 296 PRO PRO THR ARG ARG GLU ILE ILE GLU GLY TYR TYR GLY SEQRES 16 A 296 GLU TYR VAL ASP LYS ALA ASP MET PHE ILE GLY PHE GLY SEQRES 17 A 296 ARG PHE SER THR PHE ASP PHE PRO LEU LEU SER SER GLY SEQRES 18 A 296 LYS THR SER LEU TYR PHE THR VAL ALA PRO SER TYR TYR SEQRES 19 A 296 MET THR GLU THR THR LEU ARG ARG ILE LEU TYR ASP HIS SEQRES 20 A 296 ILE TYR LEU ARG HIS PHE ARG PRO LYS PRO ASP TYR SER SEQRES 21 A 296 ALA MET SER ALA ASP GLN LEU ASN VAL LEU ARG ASN ARG SEQRES 22 A 296 TYR ARG ALA GLN PRO ASP ARG VAL PHE GLY VAL GLY CYS SEQRES 23 A 296 VAL HIS ASP GLY ILE TRP PHE ALA GLU GLY SEQRES 1 B 296 MET ASN LEU VAL SER GLU LYS GLU PHE LEU ASP LEU PRO SEQRES 2 B 296 LEU VAL SER VAL ALA GLU ILE VAL ARG CYS ARG GLY PRO SEQRES 3 B 296 LYS VAL SER VAL PHE PRO PHE ASP GLY THR ARG ARG TRP SEQRES 4 B 296 PHE HIS LEU GLU CYS ASN PRO GLN TYR ASP ASP TYR GLN SEQRES 5 B 296 GLN ALA ALA LEU ARG GLN SER ILE ARG ILE LEU LYS MET SEQRES 6 B 296 LEU PHE GLU HIS GLY ILE GLU THR VAL ILE SER PRO ILE SEQRES 7 B 296 PHE SER ASP ASP LEU LEU ASP ARG GLY ASP ARG TYR ILE SEQRES 8 B 296 VAL GLN ALA LEU GLU GLY MET ALA LEU LEU ALA ASN ASP SEQRES 9 B 296 GLU GLU ILE LEU SER PHE TYR LYS GLU HIS GLU VAL HIS SEQRES 10 B 296 VAL LEU PHE TYR GLY ASP TYR LYS LYS ARG LEU PRO SER SEQRES 11 B 296 THR ALA GLN GLY ALA ALA VAL VAL LYS SER PHE ASP ASP SEQRES 12 B 296 LEU THR ILE SER THR SER SER ASN THR GLU HIS ARG LEU SEQRES 13 B 296 CYS PHE GLY VAL PHE GLY ASN ASP ALA ALA GLU SER VAL SEQRES 14 B 296 ALA GLN PHE SER ILE SER TRP ASN GLU THR HIS GLY LYS SEQRES 15 B 296 PRO PRO THR ARG ARG GLU ILE ILE GLU GLY TYR TYR GLY SEQRES 16 B 296 GLU TYR VAL ASP LYS ALA ASP MET PHE ILE GLY PHE GLY SEQRES 17 B 296 ARG PHE SER THR PHE ASP PHE PRO LEU LEU SER SER GLY SEQRES 18 B 296 LYS THR SER LEU TYR PHE THR VAL ALA PRO SER TYR TYR SEQRES 19 B 296 MET THR GLU THR THR LEU ARG ARG ILE LEU TYR ASP HIS SEQRES 20 B 296 ILE TYR LEU ARG HIS PHE ARG PRO LYS PRO ASP TYR SER SEQRES 21 B 296 ALA MET SER ALA ASP GLN LEU ASN VAL LEU ARG ASN ARG SEQRES 22 B 296 TYR ARG ALA GLN PRO ASP ARG VAL PHE GLY VAL GLY CYS SEQRES 23 B 296 VAL HIS ASP GLY ILE TRP PHE ALA GLU GLY HET EDO A1297 4 HET EDO A1298 4 HET PEG A1299 7 HET CIT A1300 13 HET EDO B1297 4 HET PEG B1298 7 HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM CIT CITRIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 3(C2 H6 O2) FORMUL 5 PEG 2(C4 H10 O3) FORMUL 6 CIT C6 H8 O7 FORMUL 9 HOH *311(H2 O) HELIX 1 1 SER A 5 LEU A 12 1 8 HELIX 2 2 PRO A 13 GLY A 25 1 13 HELIX 3 3 GLY A 35 CYS A 44 1 10 HELIX 4 4 ASP A 50 HIS A 69 1 20 HELIX 5 5 LEU A 95 ASP A 104 1 10 HELIX 6 6 ASP A 104 HIS A 114 1 11 HELIX 7 7 ASP A 123 LEU A 128 1 6 HELIX 8 8 THR A 131 THR A 148 1 18 HELIX 9 9 ALA A 165 GLY A 181 1 17 HELIX 10 10 THR A 185 GLY A 195 1 11 HELIX 11 11 PRO A 231 MET A 235 5 5 HELIX 12 12 THR A 236 LEU A 250 1 15 HELIX 13 13 ASP A 258 MET A 262 5 5 HELIX 14 14 SER A 263 GLN A 277 1 15 HELIX 15 15 SER B 5 LEU B 12 1 8 HELIX 16 16 PRO B 13 GLY B 25 1 13 HELIX 17 17 GLY B 35 CYS B 44 1 10 HELIX 18 18 ASP B 50 HIS B 69 1 20 HELIX 19 19 TYR B 90 ASP B 104 1 15 HELIX 20 20 ASP B 104 HIS B 114 1 11 HELIX 21 21 ASP B 123 LEU B 128 1 6 HELIX 22 22 THR B 131 THR B 148 1 18 HELIX 23 23 ALA B 165 GLY B 181 1 17 HELIX 24 24 THR B 185 GLY B 195 1 11 HELIX 25 25 PRO B 231 MET B 235 5 5 HELIX 26 26 THR B 236 LEU B 250 1 15 HELIX 27 27 ASP B 258 MET B 262 5 5 HELIX 28 28 SER B 263 ALA B 276 1 14 SHEET 1 AA 7 VAL A 116 TYR A 121 0 SHEET 2 AA 7 HIS A 154 VAL A 160 1 O HIS A 154 N HIS A 117 SHEET 3 AA 7 THR A 73 PHE A 79 1 O VAL A 74 N CYS A 157 SHEET 4 AA 7 VAL A 28 VAL A 30 1 O SER A 29 N ILE A 75 SHEET 5 AA 7 MET A 203 PHE A 207 1 O MET A 203 N VAL A 30 SHEET 6 AA 7 SER A 224 THR A 228 1 O SER A 224 N PHE A 204 SHEET 7 AA 7 VAL B 281 PHE B 282 -1 O PHE B 282 N PHE A 227 SHEET 1 AB 7 VAL A 281 PHE A 282 0 SHEET 2 AB 7 SER B 224 THR B 228 -1 O PHE B 227 N PHE A 282 SHEET 3 AB 7 MET B 203 PHE B 207 1 O PHE B 204 N TYR B 226 SHEET 4 AB 7 VAL B 28 VAL B 30 1 O VAL B 30 N ILE B 205 SHEET 5 AB 7 THR B 73 PHE B 79 1 O THR B 73 N SER B 29 SHEET 6 AB 7 HIS B 154 VAL B 160 1 O ARG B 155 N VAL B 74 SHEET 7 AB 7 VAL B 116 TYR B 121 1 O HIS B 117 N LEU B 156 SHEET 1 AC 2 GLY A 285 HIS A 288 0 SHEET 2 AC 2 ILE A 291 ALA A 294 -1 O ILE A 291 N HIS A 288 SHEET 1 BA 2 GLY B 285 HIS B 288 0 SHEET 2 BA 2 ILE B 291 ALA B 294 -1 O ILE B 291 N HIS B 288 CISPEP 1 GLY A 25 PRO A 26 0 2.01 CISPEP 2 ARG A 254 PRO A 255 0 0.80 CISPEP 3 GLY B 25 PRO B 26 0 3.72 CISPEP 4 ARG B 254 PRO B 255 0 1.74 SITE 1 AC1 8 LEU A 119 PHE A 120 TYR A 124 THR A 145 SITE 2 AC1 8 TYR A 194 GLY A 195 HOH A2075 HOH A2159 SITE 1 AC2 7 GLY A 221 SER A 224 ARG A 251 HIS A 252 SITE 2 AC2 7 HOH A2132 ARG B 209 SER B 211 SITE 1 AC3 7 ARG A 38 PHE A 207 GLY A 208 ARG A 209 SITE 2 AC3 7 TRP A 292 CIT A1300 HOH A2134 SITE 1 AC4 9 SER A 220 GLY A 221 HOH A2116 SER B 80 SITE 2 AC4 9 ASN B 163 PHE B 213 ASP B 214 HOH B2134 SITE 3 AC4 9 HOH B2152 SITE 1 AC5 10 THR A 212 PHE A 215 SER A 219 HOH A2124 SITE 2 AC5 10 HOH A2125 ASP B 214 PHE B 215 PRO B 216 SITE 3 AC5 10 SER B 219 HOH B2135 SITE 1 AC6 8 GLY A 35 THR A 36 ARG A 37 ARG A 38 SITE 2 AC6 8 PEG A1299 LYS B 256 PRO B 257 TYR B 259 CRYST1 77.165 101.262 93.284 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012959 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009875 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010720 0.00000