HEADER TRANSFERASE 22-JAN-14 4CND TITLE CRYSTAL STRUCTURE OF E.COLI TRMJ COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (CYTIDINE/URIDINE-2'-O-)-METHYLTRANSFERASE TRMJ; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRNA (CYTIDINE(32)/URIDINE(32)-2'-O)-METHYLTRANSFERASE, TRNA COMPND 5 CM32/UM32 METHYLTRANSFERASE, TRMJ; COMPND 6 EC: 2.1.1.200; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28B KEYWDS TRANSFERASE, SPOUT EXPDTA X-RAY DIFFRACTION AUTHOR B.VAN LAER,J.SOMME,M.ROOVERS,J.STEYAERT,L.DROOGMANS,W.VERSEES REVDAT 3 20-DEC-23 4CND 1 REMARK REVDAT 2 30-JUL-14 4CND 1 JRNL REVDAT 1 02-JUL-14 4CND 0 JRNL AUTH J.SOMME,B.VAN LAER,M.ROOVERS,J.STEYAERT,W.VERSEES, JRNL AUTH 2 L.DROOGMANS JRNL TITL CHARACTERIZATION OF TWO HOMOLOGOUS 2'-O-METHYLTRANSFERASES JRNL TITL 2 SHOWING DIFFERENT SPECIFICITIES FOR THEIR TRNA SUBSTRATES. JRNL REF RNA V. 20 1257 2014 JRNL REFN ISSN 1355-8382 JRNL PMID 24951554 JRNL DOI 10.1261/RNA.044503.114 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 46569 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2451 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2789 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2478 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 207 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.39000 REMARK 3 B22 (A**2) : -0.45000 REMARK 3 B33 (A**2) : 0.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.13000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2539 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2504 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3459 ; 1.712 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5731 ; 3.647 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 330 ; 6.319 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;36.083 ;24.082 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 416 ;13.562 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.536 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 419 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2865 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 541 ; 0.019 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1326 ; 2.082 ; 1.788 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1325 ; 2.079 ; 1.786 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1651 ; 2.818 ; 2.668 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1213 ; 3.038 ; 2.123 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4CND COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1290059518. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93340 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49018 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.88000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ILK REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02M NA/KPO4, 0.1M MES PH6.5, 19% REMARK 280 PEG3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.51500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 ARG A -15 REMARK 465 GLY A -14 REMARK 465 SER A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 THR A -6 REMARK 465 GLU A 165 REMARK 465 ASN A 166 REMARK 465 GLY A 167 REMARK 465 GLU A 168 REMARK 465 GLN A 169 REMARK 465 VAL A 170 REMARK 465 GLU A 171 REMARK 465 HIS A 172 REMARK 465 GLU A 173 REMARK 465 GLU A 174 REMARK 465 THR A 175 REMARK 465 PRO A 176 REMARK 465 TYR A 177 REMARK 465 PRO A 178 REMARK 465 LEU A 179 REMARK 465 VAL A 180 REMARK 465 ASP A 181 REMARK 465 ASP A 182 REMARK 465 LEU A 183 REMARK 465 GLU A 184 REMARK 465 ARG A 185 REMARK 465 PHE A 186 REMARK 465 TYR A 187 REMARK 465 GLY A 188 REMARK 465 HIS A 189 REMARK 465 LEU A 190 REMARK 465 GLU A 191 REMARK 465 GLN A 192 REMARK 465 THR A 193 REMARK 465 LEU A 194 REMARK 465 LEU A 195 REMARK 465 ALA A 196 REMARK 465 THR A 197 REMARK 465 GLY A 198 REMARK 465 PHE A 199 REMARK 465 ILE A 200 REMARK 465 ARG A 201 REMARK 465 GLU A 202 REMARK 465 ASN A 203 REMARK 465 HIS A 204 REMARK 465 PRO A 205 REMARK 465 GLY A 206 REMARK 465 GLN A 207 REMARK 465 VAL A 208 REMARK 465 MET A 209 REMARK 465 ASN A 210 REMARK 465 LYS A 211 REMARK 465 LEU A 212 REMARK 465 ARG A 213 REMARK 465 ARG A 214 REMARK 465 LEU A 215 REMARK 465 PHE A 216 REMARK 465 THR A 217 REMARK 465 ARG A 218 REMARK 465 ALA A 219 REMARK 465 ARG A 220 REMARK 465 PRO A 221 REMARK 465 GLU A 222 REMARK 465 SER A 223 REMARK 465 GLN A 224 REMARK 465 GLU A 225 REMARK 465 LEU A 226 REMARK 465 ASN A 227 REMARK 465 ILE A 228 REMARK 465 LEU A 229 REMARK 465 ARG A 230 REMARK 465 GLY A 231 REMARK 465 ILE A 232 REMARK 465 LEU A 233 REMARK 465 ALA A 234 REMARK 465 SER A 235 REMARK 465 ILE A 236 REMARK 465 GLU A 237 REMARK 465 GLN A 238 REMARK 465 GLN A 239 REMARK 465 ASN A 240 REMARK 465 LYS A 241 REMARK 465 GLY A 242 REMARK 465 ASN A 243 REMARK 465 LYS A 244 REMARK 465 ALA A 245 REMARK 465 GLU A 246 REMARK 465 GLY A 247 REMARK 465 LEU A 248 REMARK 465 CYS A 249 REMARK 465 GLY A 250 REMARK 465 ARG A 251 REMARK 465 MET B -16 REMARK 465 ARG B -15 REMARK 465 GLY B -14 REMARK 465 SER B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 THR B -6 REMARK 465 SER B 44 REMARK 465 GLN B 45 REMARK 465 ALA B 46 REMARK 465 ILE B 47 REMARK 465 ALA B 48 REMARK 465 LEU B 49 REMARK 465 ALA B 50 REMARK 465 GLU B 165 REMARK 465 ASN B 166 REMARK 465 GLY B 167 REMARK 465 GLU B 168 REMARK 465 GLN B 169 REMARK 465 VAL B 170 REMARK 465 GLU B 171 REMARK 465 HIS B 172 REMARK 465 GLU B 173 REMARK 465 GLU B 174 REMARK 465 THR B 175 REMARK 465 PRO B 176 REMARK 465 TYR B 177 REMARK 465 PRO B 178 REMARK 465 LEU B 179 REMARK 465 VAL B 180 REMARK 465 ASP B 181 REMARK 465 ASP B 182 REMARK 465 LEU B 183 REMARK 465 GLU B 184 REMARK 465 ARG B 185 REMARK 465 PHE B 186 REMARK 465 TYR B 187 REMARK 465 GLY B 188 REMARK 465 HIS B 189 REMARK 465 LEU B 190 REMARK 465 GLU B 191 REMARK 465 GLN B 192 REMARK 465 THR B 193 REMARK 465 LEU B 194 REMARK 465 LEU B 195 REMARK 465 ALA B 196 REMARK 465 THR B 197 REMARK 465 GLY B 198 REMARK 465 PHE B 199 REMARK 465 ILE B 200 REMARK 465 ARG B 201 REMARK 465 GLU B 202 REMARK 465 ASN B 203 REMARK 465 HIS B 204 REMARK 465 PRO B 205 REMARK 465 GLY B 206 REMARK 465 GLN B 207 REMARK 465 VAL B 208 REMARK 465 MET B 209 REMARK 465 ASN B 210 REMARK 465 LYS B 211 REMARK 465 LEU B 212 REMARK 465 ARG B 213 REMARK 465 ARG B 214 REMARK 465 LEU B 215 REMARK 465 PHE B 216 REMARK 465 THR B 217 REMARK 465 ARG B 218 REMARK 465 ALA B 219 REMARK 465 ARG B 220 REMARK 465 PRO B 221 REMARK 465 GLU B 222 REMARK 465 SER B 223 REMARK 465 GLN B 224 REMARK 465 GLU B 225 REMARK 465 LEU B 226 REMARK 465 ASN B 227 REMARK 465 ILE B 228 REMARK 465 LEU B 229 REMARK 465 ARG B 230 REMARK 465 GLY B 231 REMARK 465 ILE B 232 REMARK 465 LEU B 233 REMARK 465 ALA B 234 REMARK 465 SER B 235 REMARK 465 ILE B 236 REMARK 465 GLU B 237 REMARK 465 GLN B 238 REMARK 465 GLN B 239 REMARK 465 ASN B 240 REMARK 465 LYS B 241 REMARK 465 GLY B 242 REMARK 465 ASN B 243 REMARK 465 LYS B 244 REMARK 465 ALA B 245 REMARK 465 GLU B 246 REMARK 465 GLY B 247 REMARK 465 LEU B 248 REMARK 465 CYS B 249 REMARK 465 GLY B 250 REMARK 465 ARG B 251 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 43 -163.99 -124.23 REMARK 500 ALA A 51 -121.57 52.77 REMARK 500 SER A 80 144.51 -170.40 REMARK 500 ARG A 117 -55.64 67.71 REMARK 500 TYR A 140 78.97 -160.71 REMARK 500 LYS B 41 151.95 -46.98 REMARK 500 ARG B 117 -49.15 76.46 REMARK 500 TYR B 140 87.54 -164.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 140 SER A 141 -149.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2001 DISTANCE = 6.09 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 1165 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CNE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E.COLI TRMJ IN COMPLEX WITH S- ADENOSYL-L- REMARK 900 HOMOCYSTEINE DBREF 4CND A 1 246 UNP P0AE01 TRMJ_ECOLI 1 246 DBREF 4CND B 1 246 UNP P0AE01 TRMJ_ECOLI 1 246 SEQADV 4CND MET A -16 UNP P0AE01 EXPRESSION TAG SEQADV 4CND ARG A -15 UNP P0AE01 EXPRESSION TAG SEQADV 4CND GLY A -14 UNP P0AE01 EXPRESSION TAG SEQADV 4CND SER A -13 UNP P0AE01 EXPRESSION TAG SEQADV 4CND HIS A -12 UNP P0AE01 EXPRESSION TAG SEQADV 4CND HIS A -11 UNP P0AE01 EXPRESSION TAG SEQADV 4CND HIS A -10 UNP P0AE01 EXPRESSION TAG SEQADV 4CND HIS A -9 UNP P0AE01 EXPRESSION TAG SEQADV 4CND HIS A -8 UNP P0AE01 EXPRESSION TAG SEQADV 4CND HIS A -7 UNP P0AE01 EXPRESSION TAG SEQADV 4CND THR A -6 UNP P0AE01 EXPRESSION TAG SEQADV 4CND ASP A -5 UNP P0AE01 EXPRESSION TAG SEQADV 4CND PRO A -4 UNP P0AE01 EXPRESSION TAG SEQADV 4CND ALA A -3 UNP P0AE01 EXPRESSION TAG SEQADV 4CND LEU A -2 UNP P0AE01 EXPRESSION TAG SEQADV 4CND ARG A -1 UNP P0AE01 EXPRESSION TAG SEQADV 4CND ALA A 1 UNP P0AE01 MET 1 ENGINEERED MUTATION SEQADV 4CND GLY A 247 UNP P0AE01 EXPRESSION TAG SEQADV 4CND LEU A 248 UNP P0AE01 EXPRESSION TAG SEQADV 4CND CYS A 249 UNP P0AE01 EXPRESSION TAG SEQADV 4CND GLY A 250 UNP P0AE01 EXPRESSION TAG SEQADV 4CND ARG A 251 UNP P0AE01 EXPRESSION TAG SEQADV 4CND MET B -16 UNP P0AE01 EXPRESSION TAG SEQADV 4CND ARG B -15 UNP P0AE01 EXPRESSION TAG SEQADV 4CND GLY B -14 UNP P0AE01 EXPRESSION TAG SEQADV 4CND SER B -13 UNP P0AE01 EXPRESSION TAG SEQADV 4CND HIS B -12 UNP P0AE01 EXPRESSION TAG SEQADV 4CND HIS B -11 UNP P0AE01 EXPRESSION TAG SEQADV 4CND HIS B -10 UNP P0AE01 EXPRESSION TAG SEQADV 4CND HIS B -9 UNP P0AE01 EXPRESSION TAG SEQADV 4CND HIS B -8 UNP P0AE01 EXPRESSION TAG SEQADV 4CND HIS B -7 UNP P0AE01 EXPRESSION TAG SEQADV 4CND THR B -6 UNP P0AE01 EXPRESSION TAG SEQADV 4CND ASP B -5 UNP P0AE01 EXPRESSION TAG SEQADV 4CND PRO B -4 UNP P0AE01 EXPRESSION TAG SEQADV 4CND ALA B -3 UNP P0AE01 EXPRESSION TAG SEQADV 4CND LEU B -2 UNP P0AE01 EXPRESSION TAG SEQADV 4CND ARG B -1 UNP P0AE01 EXPRESSION TAG SEQADV 4CND ALA B 1 UNP P0AE01 MET 1 ENGINEERED MUTATION SEQADV 4CND GLY B 247 UNP P0AE01 EXPRESSION TAG SEQADV 4CND LEU B 248 UNP P0AE01 EXPRESSION TAG SEQADV 4CND CYS B 249 UNP P0AE01 EXPRESSION TAG SEQADV 4CND GLY B 250 UNP P0AE01 EXPRESSION TAG SEQADV 4CND ARG B 251 UNP P0AE01 EXPRESSION TAG SEQRES 1 A 267 MET ARG GLY SER HIS HIS HIS HIS HIS HIS THR ASP PRO SEQRES 2 A 267 ALA LEU ARG ALA LEU GLN ASN ILE ARG ILE VAL LEU VAL SEQRES 3 A 267 GLU THR SER HIS THR GLY ASN MET GLY SER VAL ALA ARG SEQRES 4 A 267 ALA MET LYS THR MET GLY LEU THR ASN LEU TRP LEU VAL SEQRES 5 A 267 ASN PRO LEU VAL LYS PRO ASP SER GLN ALA ILE ALA LEU SEQRES 6 A 267 ALA ALA GLY ALA SER ASP VAL ILE GLY ASN ALA HIS ILE SEQRES 7 A 267 VAL ASP THR LEU ASP GLU ALA LEU ALA GLY CYS SER LEU SEQRES 8 A 267 VAL VAL GLY THR SER ALA ARG SER ARG THR LEU PRO TRP SEQRES 9 A 267 PRO MET LEU ASP PRO ARG GLU CYS GLY LEU LYS SER VAL SEQRES 10 A 267 ALA GLU ALA ALA ASN THR PRO VAL ALA LEU VAL PHE GLY SEQRES 11 A 267 ARG GLU ARG VAL GLY LEU THR ASN GLU GLU LEU GLN LYS SEQRES 12 A 267 CYS HIS TYR HIS VAL ALA ILE ALA ALA ASN PRO GLU TYR SEQRES 13 A 267 SER SER LEU ASN LEU ALA MET ALA VAL GLN VAL ILE ALA SEQRES 14 A 267 TYR GLU VAL ARG MET ALA TRP LEU ALA THR GLN GLU ASN SEQRES 15 A 267 GLY GLU GLN VAL GLU HIS GLU GLU THR PRO TYR PRO LEU SEQRES 16 A 267 VAL ASP ASP LEU GLU ARG PHE TYR GLY HIS LEU GLU GLN SEQRES 17 A 267 THR LEU LEU ALA THR GLY PHE ILE ARG GLU ASN HIS PRO SEQRES 18 A 267 GLY GLN VAL MET ASN LYS LEU ARG ARG LEU PHE THR ARG SEQRES 19 A 267 ALA ARG PRO GLU SER GLN GLU LEU ASN ILE LEU ARG GLY SEQRES 20 A 267 ILE LEU ALA SER ILE GLU GLN GLN ASN LYS GLY ASN LYS SEQRES 21 A 267 ALA GLU GLY LEU CYS GLY ARG SEQRES 1 B 267 MET ARG GLY SER HIS HIS HIS HIS HIS HIS THR ASP PRO SEQRES 2 B 267 ALA LEU ARG ALA LEU GLN ASN ILE ARG ILE VAL LEU VAL SEQRES 3 B 267 GLU THR SER HIS THR GLY ASN MET GLY SER VAL ALA ARG SEQRES 4 B 267 ALA MET LYS THR MET GLY LEU THR ASN LEU TRP LEU VAL SEQRES 5 B 267 ASN PRO LEU VAL LYS PRO ASP SER GLN ALA ILE ALA LEU SEQRES 6 B 267 ALA ALA GLY ALA SER ASP VAL ILE GLY ASN ALA HIS ILE SEQRES 7 B 267 VAL ASP THR LEU ASP GLU ALA LEU ALA GLY CYS SER LEU SEQRES 8 B 267 VAL VAL GLY THR SER ALA ARG SER ARG THR LEU PRO TRP SEQRES 9 B 267 PRO MET LEU ASP PRO ARG GLU CYS GLY LEU LYS SER VAL SEQRES 10 B 267 ALA GLU ALA ALA ASN THR PRO VAL ALA LEU VAL PHE GLY SEQRES 11 B 267 ARG GLU ARG VAL GLY LEU THR ASN GLU GLU LEU GLN LYS SEQRES 12 B 267 CYS HIS TYR HIS VAL ALA ILE ALA ALA ASN PRO GLU TYR SEQRES 13 B 267 SER SER LEU ASN LEU ALA MET ALA VAL GLN VAL ILE ALA SEQRES 14 B 267 TYR GLU VAL ARG MET ALA TRP LEU ALA THR GLN GLU ASN SEQRES 15 B 267 GLY GLU GLN VAL GLU HIS GLU GLU THR PRO TYR PRO LEU SEQRES 16 B 267 VAL ASP ASP LEU GLU ARG PHE TYR GLY HIS LEU GLU GLN SEQRES 17 B 267 THR LEU LEU ALA THR GLY PHE ILE ARG GLU ASN HIS PRO SEQRES 18 B 267 GLY GLN VAL MET ASN LYS LEU ARG ARG LEU PHE THR ARG SEQRES 19 B 267 ALA ARG PRO GLU SER GLN GLU LEU ASN ILE LEU ARG GLY SEQRES 20 B 267 ILE LEU ALA SER ILE GLU GLN GLN ASN LYS GLY ASN LYS SEQRES 21 B 267 ALA GLU GLY LEU CYS GLY ARG HET PEG B1165 7 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 PEG C4 H10 O3 FORMUL 4 HOH *207(H2 O) HELIX 1 1 ALA A -3 GLN A 3 1 6 HELIX 2 2 HIS A 14 MET A 28 1 15 HELIX 3 3 ASP A 43 ALA A 51 1 9 HELIX 4 4 ALA A 53 ASN A 59 1 7 HELIX 5 5 THR A 65 ALA A 71 1 7 HELIX 6 6 ASP A 92 ALA A 105 1 14 HELIX 7 7 THR A 121 GLN A 126 1 6 HELIX 8 8 ASN A 144 THR A 163 1 20 HELIX 9 9 ALA B -3 GLN B 3 1 6 HELIX 10 10 HIS B 14 MET B 28 1 15 HELIX 11 11 ALA B 53 ASN B 59 1 7 HELIX 12 12 THR B 65 ALA B 71 1 7 HELIX 13 13 ASP B 92 ALA B 105 1 14 HELIX 14 14 THR B 121 GLN B 126 1 6 HELIX 15 15 ASN B 144 THR B 163 1 20 SHEET 1 AA 7 HIS A 61 VAL A 63 0 SHEET 2 AA 7 ASN A 32 VAL A 36 1 O LEU A 33 N HIS A 61 SHEET 3 AA 7 ILE A 5 VAL A 10 1 O ILE A 5 N ASN A 32 SHEET 4 AA 7 VAL A 109 PHE A 113 1 O VAL A 109 N ARG A 6 SHEET 5 AA 7 LEU A 75 THR A 79 1 O LEU A 75 N ALA A 110 SHEET 6 AA 7 TYR A 130 VAL A 132 1 O TYR A 130 N GLY A 78 SHEET 7 AA 7 MET A 90 LEU A 91 1 N LEU A 91 O HIS A 131 SHEET 1 BA 7 HIS B 61 VAL B 63 0 SHEET 2 BA 7 ASN B 32 VAL B 36 1 O LEU B 33 N HIS B 61 SHEET 3 BA 7 ILE B 5 VAL B 10 1 O ILE B 5 N ASN B 32 SHEET 4 BA 7 VAL B 109 PHE B 113 1 O VAL B 109 N ARG B 6 SHEET 5 BA 7 LEU B 75 THR B 79 1 O LEU B 75 N ALA B 110 SHEET 6 BA 7 TYR B 130 VAL B 132 1 O TYR B 130 N GLY B 78 SHEET 7 BA 7 MET B 90 LEU B 91 1 N LEU B 91 O HIS B 131 SITE 1 AC1 3 PRO B 89 HIS B 129 TYR B 130 CRYST1 42.400 73.030 53.330 90.00 105.13 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023585 0.000000 0.006377 0.00000 SCALE2 0.000000 0.013693 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019425 0.00000