HEADER SIGNALING PROTEIN 24-JAN-14 4CNU TITLE CRYSTAL STRUCTURE OF WT HUMAN CRMP-4 FROM LATTICE TRANSLOCATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROPYRIMIDINASE-LIKE 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DRP-3, COLLAPSIN RESPONSE MEDIATOR PROTEIN 4, CRMP-4, UNC- COMPND 5 33-LIKE PHOSPHOPROTEIN 1, ULIP-1, DIHYDROPYRIMIDINASE-RELATED PROTEIN COMPND 6 3, DIHYDROPYRIMIDINASE-LIKE 3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS SIGNALING PROTEIN, NEUROGENESIS, AXONAL OUTGROWTH, DEVELOPMENTAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.PONNUSAMY,A.LEBEDEV,B.LOHKAMP REVDAT 3 20-DEC-23 4CNU 1 REMARK REVDAT 2 17-JAN-18 4CNU 1 REMARK REVDAT 1 18-JUN-14 4CNU 0 JRNL AUTH R.PONNUSAMY,A.LEBEDEV,S.PAHLOW,B.LOHKAMP JRNL TITL CRYSTAL STRUCTURE OF HUMAN CRMP-4: CORRECTION OF INTENSITIES JRNL TITL 2 FOR LATTICE-TRANSLOCATION DISORDER JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 1680 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 24914979 JRNL DOI 10.1107/S1399004714006634 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 27454 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.257 REMARK 3 R VALUE (WORKING SET) : 0.255 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1465 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1785 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.3690 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.4510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7512 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.74000 REMARK 3 B22 (A**2) : -1.53000 REMARK 3 B33 (A**2) : -1.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.450 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.329 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.095 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7670 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7258 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10402 ; 0.981 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16746 ; 0.698 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 974 ; 5.603 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 332 ;36.627 ;24.940 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1300 ;13.973 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;13.657 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1162 ; 0.055 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8738 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1686 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3902 ; 1.424 ; 4.593 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3901 ; 1.421 ; 4.592 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4874 ; 2.429 ; 6.883 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3768 ; 1.184 ; 4.724 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 12 499 B 12 499 31445 0.02 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. DATA WERE CORRECTED REMARK 3 FOR LATTICE TRANSLOCATION DISORDER ITERATIVELY BEFORE REFINEMENT. REMARK 4 REMARK 4 4CNU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1290059562. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07068 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28951 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 39.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.24000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 1.21000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4CNS REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% (W/V) PEG 3350, 200 MM NA REMARK 280 TARTRATE, 100 MM BIS-TRIS PROPANE PH 7.0, 50 MM NA FLUORIDE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 48.12000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.11000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.12000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.11000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 62230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 48.12000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 -54.11000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 118.19000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 -48.12000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 54.11000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 118.19000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 62230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 96.24000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 108.22000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 48.12000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 54.11000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 118.19000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 48.12000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 54.11000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 118.19000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 TYR A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 5 REMARK 465 LYS A 6 REMARK 465 LYS A 7 REMARK 465 ASN A 8 REMARK 465 ILE A 9 REMARK 465 PRO A 10 REMARK 465 ARG A 11 REMARK 465 ASP A 500 REMARK 465 GLY A 501 REMARK 465 PRO A 502 REMARK 465 VAL A 503 REMARK 465 PHE A 504 REMARK 465 ASP A 505 REMARK 465 LEU A 506 REMARK 465 THR A 507 REMARK 465 THR A 508 REMARK 465 THR A 509 REMARK 465 PRO A 510 REMARK 465 LYS A 511 REMARK 465 GLY A 512 REMARK 465 GLY A 513 REMARK 465 THR A 514 REMARK 465 PRO A 515 REMARK 465 ALA A 516 REMARK 465 GLY A 517 REMARK 465 SER A 518 REMARK 465 ALA A 519 REMARK 465 ARG A 520 REMARK 465 GLY A 521 REMARK 465 SER A 522 REMARK 465 PRO A 523 REMARK 465 THR A 524 REMARK 465 ARG A 525 REMARK 465 PRO A 526 REMARK 465 ASN A 527 REMARK 465 PRO A 528 REMARK 465 PRO A 529 REMARK 465 VAL A 530 REMARK 465 ARG A 531 REMARK 465 ASN A 532 REMARK 465 LEU A 533 REMARK 465 HIS A 534 REMARK 465 GLN A 535 REMARK 465 SER A 536 REMARK 465 GLY A 537 REMARK 465 PHE A 538 REMARK 465 SER A 539 REMARK 465 LEU A 540 REMARK 465 SER A 541 REMARK 465 GLY A 542 REMARK 465 THR A 543 REMARK 465 GLN A 544 REMARK 465 VAL A 545 REMARK 465 ASP A 546 REMARK 465 GLU A 547 REMARK 465 GLY A 548 REMARK 465 VAL A 549 REMARK 465 ARG A 550 REMARK 465 SER A 551 REMARK 465 ALA A 552 REMARK 465 SER A 553 REMARK 465 LYS A 554 REMARK 465 ARG A 555 REMARK 465 ILE A 556 REMARK 465 VAL A 557 REMARK 465 ALA A 558 REMARK 465 PRO A 559 REMARK 465 PRO A 560 REMARK 465 GLY A 561 REMARK 465 GLY A 562 REMARK 465 ARG A 563 REMARK 465 SER A 564 REMARK 465 ASN A 565 REMARK 465 ILE A 566 REMARK 465 THR A 567 REMARK 465 SER A 568 REMARK 465 LEU A 569 REMARK 465 SER A 570 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 TYR B 3 REMARK 465 GLN B 4 REMARK 465 GLY B 5 REMARK 465 LYS B 6 REMARK 465 LYS B 7 REMARK 465 ASN B 8 REMARK 465 ILE B 9 REMARK 465 PRO B 10 REMARK 465 ARG B 11 REMARK 465 ASP B 500 REMARK 465 GLY B 501 REMARK 465 PRO B 502 REMARK 465 VAL B 503 REMARK 465 PHE B 504 REMARK 465 ASP B 505 REMARK 465 LEU B 506 REMARK 465 THR B 507 REMARK 465 THR B 508 REMARK 465 THR B 509 REMARK 465 PRO B 510 REMARK 465 LYS B 511 REMARK 465 GLY B 512 REMARK 465 GLY B 513 REMARK 465 THR B 514 REMARK 465 PRO B 515 REMARK 465 ALA B 516 REMARK 465 GLY B 517 REMARK 465 SER B 518 REMARK 465 ALA B 519 REMARK 465 ARG B 520 REMARK 465 GLY B 521 REMARK 465 SER B 522 REMARK 465 PRO B 523 REMARK 465 THR B 524 REMARK 465 ARG B 525 REMARK 465 PRO B 526 REMARK 465 ASN B 527 REMARK 465 PRO B 528 REMARK 465 PRO B 529 REMARK 465 VAL B 530 REMARK 465 ARG B 531 REMARK 465 ASN B 532 REMARK 465 LEU B 533 REMARK 465 HIS B 534 REMARK 465 GLN B 535 REMARK 465 SER B 536 REMARK 465 GLY B 537 REMARK 465 PHE B 538 REMARK 465 SER B 539 REMARK 465 LEU B 540 REMARK 465 SER B 541 REMARK 465 GLY B 542 REMARK 465 THR B 543 REMARK 465 GLN B 544 REMARK 465 VAL B 545 REMARK 465 ASP B 546 REMARK 465 GLU B 547 REMARK 465 GLY B 548 REMARK 465 VAL B 549 REMARK 465 ARG B 550 REMARK 465 SER B 551 REMARK 465 ALA B 552 REMARK 465 SER B 553 REMARK 465 LYS B 554 REMARK 465 ARG B 555 REMARK 465 ILE B 556 REMARK 465 VAL B 557 REMARK 465 ALA B 558 REMARK 465 PRO B 559 REMARK 465 PRO B 560 REMARK 465 GLY B 561 REMARK 465 GLY B 562 REMARK 465 ARG B 563 REMARK 465 SER B 564 REMARK 465 ASN B 565 REMARK 465 ILE B 566 REMARK 465 THR B 567 REMARK 465 SER B 568 REMARK 465 LEU B 569 REMARK 465 SER B 570 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 48 71.69 47.64 REMARK 500 GLN A 77 51.75 31.01 REMARK 500 TYR A 80 103.65 -163.42 REMARK 500 TYR A 170 70.42 55.95 REMARK 500 LEU A 173 -74.89 -150.78 REMARK 500 LYS A 254 70.91 37.95 REMARK 500 CYS A 334 72.99 -152.06 REMARK 500 ASN A 347 107.56 -167.37 REMARK 500 SER A 385 -58.71 -140.33 REMARK 500 ASN A 393 34.56 71.85 REMARK 500 GLN A 449 29.52 49.92 REMARK 500 LYS A 487 34.67 -89.84 REMARK 500 ASN B 48 70.94 47.98 REMARK 500 GLN B 77 51.98 31.20 REMARK 500 TYR B 80 103.14 -163.26 REMARK 500 TYR B 170 70.63 55.76 REMARK 500 LEU B 173 -74.92 -151.27 REMARK 500 LYS B 254 70.08 38.48 REMARK 500 CYS B 334 72.76 -151.62 REMARK 500 ASN B 347 107.32 -167.48 REMARK 500 SER B 385 -58.63 -140.60 REMARK 500 ASN B 393 33.26 72.06 REMARK 500 LYS B 487 35.67 -90.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CNS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TRUNCATED HUMAN CRMP-4 REMARK 900 RELATED ID: 4CNT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF WT HUMAN CRMP-4 REMARK 999 REMARK 999 SEQUENCE REMARK 999 ISOFORM 2 GENBANK REF NP_001378.1 DBREF 4CNU A 1 570 UNP Q14195 DPYL3_HUMAN 1 570 DBREF 4CNU B 1 570 UNP Q14195 DPYL3_HUMAN 1 570 SEQADV 4CNU TYR A 76 UNP Q14195 PHE 76 CONFLICT SEQADV 4CNU TYR B 76 UNP Q14195 PHE 76 CONFLICT SEQRES 1 A 570 MET SER TYR GLN GLY LYS LYS ASN ILE PRO ARG ILE THR SEQRES 2 A 570 SER ASP ARG LEU LEU ILE LYS GLY GLY ARG ILE VAL ASN SEQRES 3 A 570 ASP ASP GLN SER PHE TYR ALA ASP ILE TYR MET GLU ASP SEQRES 4 A 570 GLY LEU ILE LYS GLN ILE GLY ASP ASN LEU ILE VAL PRO SEQRES 5 A 570 GLY GLY VAL LYS THR ILE GLU ALA ASN GLY LYS MET VAL SEQRES 6 A 570 ILE PRO GLY GLY ILE ASP VAL HIS THR HIS TYR GLN MET SEQRES 7 A 570 PRO TYR LYS GLY MET THR THR VAL ASP ASP PHE PHE GLN SEQRES 8 A 570 GLY THR LYS ALA ALA LEU ALA GLY GLY THR THR MET ILE SEQRES 9 A 570 ILE ASP HIS VAL VAL PRO GLU PRO GLU SER SER LEU THR SEQRES 10 A 570 GLU ALA TYR GLU LYS TRP ARG GLU TRP ALA ASP GLY LYS SEQRES 11 A 570 SER CYS CYS ASP TYR ALA LEU HIS VAL ASP ILE THR HIS SEQRES 12 A 570 TRP ASN ASP SER VAL LYS GLN GLU VAL GLN ASN LEU ILE SEQRES 13 A 570 LYS ASP LYS GLY VAL ASN SER PHE MET VAL TYR MET ALA SEQRES 14 A 570 TYR LYS ASP LEU TYR GLN VAL SER ASN THR GLU LEU TYR SEQRES 15 A 570 GLU ILE PHE THR CYS LEU GLY GLU LEU GLY ALA ILE ALA SEQRES 16 A 570 GLN VAL HIS ALA GLU ASN GLY ASP ILE ILE ALA GLN GLU SEQRES 17 A 570 GLN THR ARG MET LEU GLU MET GLY ILE THR GLY PRO GLU SEQRES 18 A 570 GLY HIS VAL LEU SER ARG PRO GLU GLU LEU GLU ALA GLU SEQRES 19 A 570 ALA VAL PHE ARG ALA ILE THR ILE ALA SER GLN THR ASN SEQRES 20 A 570 CYS PRO LEU TYR VAL THR LYS VAL MET SER LYS SER ALA SEQRES 21 A 570 ALA ASP LEU ILE SER GLN ALA ARG LYS LYS GLY ASN VAL SEQRES 22 A 570 VAL PHE GLY GLU PRO ILE THR ALA SER LEU GLY ILE ASP SEQRES 23 A 570 GLY THR HIS TYR TRP SER LYS ASN TRP ALA LYS ALA ALA SEQRES 24 A 570 ALA PHE VAL THR SER PRO PRO LEU SER PRO ASP PRO THR SEQRES 25 A 570 THR PRO ASP TYR ILE ASN SER LEU LEU ALA SER GLY ASP SEQRES 26 A 570 LEU GLN LEU SER GLY SER ALA HIS CYS THR PHE SER THR SEQRES 27 A 570 ALA GLN LYS ALA ILE GLY LYS ASP ASN PHE THR ALA ILE SEQRES 28 A 570 PRO GLU GLY THR ASN GLY VAL GLU GLU ARG MET SER VAL SEQRES 29 A 570 ILE TRP ASP LYS ALA VAL ALA THR GLY LYS MET ASP GLU SEQRES 30 A 570 ASN GLN PHE VAL ALA VAL THR SER THR ASN ALA ALA LYS SEQRES 31 A 570 ILE PHE ASN LEU TYR PRO ARG LYS GLY ARG ILE SER VAL SEQRES 32 A 570 GLY SER ASP SER ASP LEU VAL ILE TRP ASP PRO ASP ALA SEQRES 33 A 570 VAL LYS ILE VAL SER ALA LYS ASN HIS GLN SER ALA ALA SEQRES 34 A 570 GLU TYR ASN ILE PHE GLU GLY MET GLU LEU ARG GLY ALA SEQRES 35 A 570 PRO LEU VAL VAL ILE CYS GLN GLY LYS ILE MET LEU GLU SEQRES 36 A 570 ASP GLY ASN LEU HIS VAL THR GLN GLY ALA GLY ARG PHE SEQRES 37 A 570 ILE PRO CYS SER PRO PHE SER ASP TYR VAL TYR LYS ARG SEQRES 38 A 570 ILE LYS ALA ARG ARG LYS MET ALA ASP LEU HIS ALA VAL SEQRES 39 A 570 PRO ARG GLY MET TYR ASP GLY PRO VAL PHE ASP LEU THR SEQRES 40 A 570 THR THR PRO LYS GLY GLY THR PRO ALA GLY SER ALA ARG SEQRES 41 A 570 GLY SER PRO THR ARG PRO ASN PRO PRO VAL ARG ASN LEU SEQRES 42 A 570 HIS GLN SER GLY PHE SER LEU SER GLY THR GLN VAL ASP SEQRES 43 A 570 GLU GLY VAL ARG SER ALA SER LYS ARG ILE VAL ALA PRO SEQRES 44 A 570 PRO GLY GLY ARG SER ASN ILE THR SER LEU SER SEQRES 1 B 570 MET SER TYR GLN GLY LYS LYS ASN ILE PRO ARG ILE THR SEQRES 2 B 570 SER ASP ARG LEU LEU ILE LYS GLY GLY ARG ILE VAL ASN SEQRES 3 B 570 ASP ASP GLN SER PHE TYR ALA ASP ILE TYR MET GLU ASP SEQRES 4 B 570 GLY LEU ILE LYS GLN ILE GLY ASP ASN LEU ILE VAL PRO SEQRES 5 B 570 GLY GLY VAL LYS THR ILE GLU ALA ASN GLY LYS MET VAL SEQRES 6 B 570 ILE PRO GLY GLY ILE ASP VAL HIS THR HIS TYR GLN MET SEQRES 7 B 570 PRO TYR LYS GLY MET THR THR VAL ASP ASP PHE PHE GLN SEQRES 8 B 570 GLY THR LYS ALA ALA LEU ALA GLY GLY THR THR MET ILE SEQRES 9 B 570 ILE ASP HIS VAL VAL PRO GLU PRO GLU SER SER LEU THR SEQRES 10 B 570 GLU ALA TYR GLU LYS TRP ARG GLU TRP ALA ASP GLY LYS SEQRES 11 B 570 SER CYS CYS ASP TYR ALA LEU HIS VAL ASP ILE THR HIS SEQRES 12 B 570 TRP ASN ASP SER VAL LYS GLN GLU VAL GLN ASN LEU ILE SEQRES 13 B 570 LYS ASP LYS GLY VAL ASN SER PHE MET VAL TYR MET ALA SEQRES 14 B 570 TYR LYS ASP LEU TYR GLN VAL SER ASN THR GLU LEU TYR SEQRES 15 B 570 GLU ILE PHE THR CYS LEU GLY GLU LEU GLY ALA ILE ALA SEQRES 16 B 570 GLN VAL HIS ALA GLU ASN GLY ASP ILE ILE ALA GLN GLU SEQRES 17 B 570 GLN THR ARG MET LEU GLU MET GLY ILE THR GLY PRO GLU SEQRES 18 B 570 GLY HIS VAL LEU SER ARG PRO GLU GLU LEU GLU ALA GLU SEQRES 19 B 570 ALA VAL PHE ARG ALA ILE THR ILE ALA SER GLN THR ASN SEQRES 20 B 570 CYS PRO LEU TYR VAL THR LYS VAL MET SER LYS SER ALA SEQRES 21 B 570 ALA ASP LEU ILE SER GLN ALA ARG LYS LYS GLY ASN VAL SEQRES 22 B 570 VAL PHE GLY GLU PRO ILE THR ALA SER LEU GLY ILE ASP SEQRES 23 B 570 GLY THR HIS TYR TRP SER LYS ASN TRP ALA LYS ALA ALA SEQRES 24 B 570 ALA PHE VAL THR SER PRO PRO LEU SER PRO ASP PRO THR SEQRES 25 B 570 THR PRO ASP TYR ILE ASN SER LEU LEU ALA SER GLY ASP SEQRES 26 B 570 LEU GLN LEU SER GLY SER ALA HIS CYS THR PHE SER THR SEQRES 27 B 570 ALA GLN LYS ALA ILE GLY LYS ASP ASN PHE THR ALA ILE SEQRES 28 B 570 PRO GLU GLY THR ASN GLY VAL GLU GLU ARG MET SER VAL SEQRES 29 B 570 ILE TRP ASP LYS ALA VAL ALA THR GLY LYS MET ASP GLU SEQRES 30 B 570 ASN GLN PHE VAL ALA VAL THR SER THR ASN ALA ALA LYS SEQRES 31 B 570 ILE PHE ASN LEU TYR PRO ARG LYS GLY ARG ILE SER VAL SEQRES 32 B 570 GLY SER ASP SER ASP LEU VAL ILE TRP ASP PRO ASP ALA SEQRES 33 B 570 VAL LYS ILE VAL SER ALA LYS ASN HIS GLN SER ALA ALA SEQRES 34 B 570 GLU TYR ASN ILE PHE GLU GLY MET GLU LEU ARG GLY ALA SEQRES 35 B 570 PRO LEU VAL VAL ILE CYS GLN GLY LYS ILE MET LEU GLU SEQRES 36 B 570 ASP GLY ASN LEU HIS VAL THR GLN GLY ALA GLY ARG PHE SEQRES 37 B 570 ILE PRO CYS SER PRO PHE SER ASP TYR VAL TYR LYS ARG SEQRES 38 B 570 ILE LYS ALA ARG ARG LYS MET ALA ASP LEU HIS ALA VAL SEQRES 39 B 570 PRO ARG GLY MET TYR ASP GLY PRO VAL PHE ASP LEU THR SEQRES 40 B 570 THR THR PRO LYS GLY GLY THR PRO ALA GLY SER ALA ARG SEQRES 41 B 570 GLY SER PRO THR ARG PRO ASN PRO PRO VAL ARG ASN LEU SEQRES 42 B 570 HIS GLN SER GLY PHE SER LEU SER GLY THR GLN VAL ASP SEQRES 43 B 570 GLU GLY VAL ARG SER ALA SER LYS ARG ILE VAL ALA PRO SEQRES 44 B 570 PRO GLY GLY ARG SER ASN ILE THR SER LEU SER HELIX 1 1 ASP A 88 GLY A 99 1 12 HELIX 2 2 SER A 115 SER A 131 1 17 HELIX 3 3 ASN A 145 ASP A 158 1 14 HELIX 4 4 SER A 177 GLY A 192 1 16 HELIX 5 5 ASN A 201 MET A 215 1 15 HELIX 6 6 PRO A 220 ARG A 227 1 8 HELIX 7 7 GLU A 229 THR A 246 1 18 HELIX 8 8 SER A 257 GLY A 271 1 15 HELIX 9 9 ILE A 279 ILE A 285 1 7 HELIX 10 10 ASP A 286 SER A 292 5 7 HELIX 11 11 ASN A 294 PHE A 301 1 8 HELIX 12 12 THR A 312 SER A 323 1 12 HELIX 13 13 SER A 337 ALA A 342 1 6 HELIX 14 14 ILE A 343 LYS A 345 5 3 HELIX 15 15 ASN A 347 ILE A 351 5 5 HELIX 16 16 GLU A 360 ALA A 369 1 10 HELIX 17 17 ASP A 376 SER A 385 1 10 HELIX 18 18 SER A 385 PHE A 392 1 8 HELIX 19 19 SER A 475 LYS A 487 1 13 HELIX 20 20 ASP B 88 GLY B 99 1 12 HELIX 21 21 SER B 115 SER B 131 1 17 HELIX 22 22 ASN B 145 ASP B 158 1 14 HELIX 23 23 SER B 177 GLY B 192 1 16 HELIX 24 24 ASN B 201 MET B 215 1 15 HELIX 25 25 PRO B 220 ARG B 227 1 8 HELIX 26 26 GLU B 229 THR B 246 1 18 HELIX 27 27 SER B 257 GLY B 271 1 15 HELIX 28 28 ILE B 279 ILE B 285 1 7 HELIX 29 29 ASP B 286 SER B 292 5 7 HELIX 30 30 ASN B 294 PHE B 301 1 8 HELIX 31 31 THR B 312 SER B 323 1 12 HELIX 32 32 SER B 337 ALA B 342 1 6 HELIX 33 33 ILE B 343 LYS B 345 5 3 HELIX 34 34 ASN B 347 ILE B 351 5 5 HELIX 35 35 GLU B 360 ALA B 369 1 10 HELIX 36 36 ASP B 376 SER B 385 1 10 HELIX 37 37 SER B 385 PHE B 392 1 8 HELIX 38 38 SER B 475 LYS B 487 1 13 SHEET 1 AA 8 LEU A 41 GLY A 46 0 SHEET 2 AA 8 SER A 30 GLU A 38 -1 O ASP A 34 N GLY A 46 SHEET 3 AA 8 LEU A 17 VAL A 25 -1 O LEU A 17 N MET A 37 SHEET 4 AA 8 MET A 64 PRO A 67 1 O VAL A 65 N VAL A 25 SHEET 5 AA 8 LEU A 409 ILE A 419 -1 O VAL A 410 N ILE A 66 SHEET 6 AA 8 GLU A 438 CYS A 448 -1 O LEU A 439 N LYS A 418 SHEET 7 AA 8 LYS A 451 GLU A 455 -1 O LYS A 451 N CYS A 448 SHEET 8 AA 8 ASN A 458 LEU A 459 -1 O ASN A 458 N GLU A 455 SHEET 1 AB 4 LEU A 41 GLY A 46 0 SHEET 2 AB 4 SER A 30 GLU A 38 -1 O ASP A 34 N GLY A 46 SHEET 3 AB 4 LEU A 17 VAL A 25 -1 O LEU A 17 N MET A 37 SHEET 4 AB 4 LYS A 56 GLU A 59 1 O LYS A 56 N LEU A 18 SHEET 1 AC 7 GLY A 69 THR A 74 0 SHEET 2 AC 7 THR A 101 VAL A 108 1 N THR A 102 O GLY A 69 SHEET 3 AC 7 ASP A 134 ASP A 140 1 O ASP A 134 N ILE A 104 SHEET 4 AC 7 SER A 163 TYR A 167 1 O SER A 163 N VAL A 139 SHEET 5 AC 7 ILE A 194 HIS A 198 1 O ILE A 194 N PHE A 164 SHEET 6 AC 7 LEU A 250 VAL A 255 1 O TYR A 251 N VAL A 197 SHEET 7 AC 7 VAL A 274 PRO A 278 1 O PHE A 275 N VAL A 252 SHEET 1 BA 8 LEU B 41 GLY B 46 0 SHEET 2 BA 8 SER B 30 GLU B 38 -1 O ASP B 34 N GLY B 46 SHEET 3 BA 8 LEU B 17 VAL B 25 -1 O LEU B 17 N MET B 37 SHEET 4 BA 8 MET B 64 PRO B 67 1 O VAL B 65 N VAL B 25 SHEET 5 BA 8 LEU B 409 ILE B 419 -1 O VAL B 410 N ILE B 66 SHEET 6 BA 8 GLU B 438 CYS B 448 -1 O LEU B 439 N LYS B 418 SHEET 7 BA 8 LYS B 451 GLU B 455 -1 O LYS B 451 N CYS B 448 SHEET 8 BA 8 ASN B 458 LEU B 459 -1 O ASN B 458 N GLU B 455 SHEET 1 BB 4 LEU B 41 GLY B 46 0 SHEET 2 BB 4 SER B 30 GLU B 38 -1 O ASP B 34 N GLY B 46 SHEET 3 BB 4 LEU B 17 VAL B 25 -1 O LEU B 17 N MET B 37 SHEET 4 BB 4 LYS B 56 GLU B 59 1 O LYS B 56 N LEU B 18 SHEET 1 BC 7 GLY B 69 THR B 74 0 SHEET 2 BC 7 THR B 101 VAL B 108 1 N THR B 102 O GLY B 69 SHEET 3 BC 7 ASP B 134 ASP B 140 1 O ASP B 134 N ILE B 104 SHEET 4 BC 7 SER B 163 TYR B 167 1 O SER B 163 N VAL B 139 SHEET 5 BC 7 ILE B 194 HIS B 198 1 O ILE B 194 N PHE B 164 SHEET 6 BC 7 LEU B 250 VAL B 255 1 O TYR B 251 N VAL B 197 SHEET 7 BC 7 VAL B 274 PRO B 278 1 O PHE B 275 N VAL B 252 CISPEP 1 SER A 304 PRO A 305 0 -10.17 CISPEP 2 TYR A 395 PRO A 396 0 2.90 CISPEP 3 SER B 304 PRO B 305 0 -10.69 CISPEP 4 TYR B 395 PRO B 396 0 3.28 CRYST1 96.240 108.220 118.190 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010391 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009240 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008461 0.00000 MTRIX1 1 0.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 0.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 0.000000 0.00000 1