HEADER SIGNALING PROTEIN 25-JAN-14 4CNZ TITLE STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM BRASILENSE TITLE 2 IN COMPLEX WITH ADENOSINE DIPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PII-LIKE PROTEIN PZ; COMPND 3 CHAIN: A, B, C, D, E, F SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AZOSPIRILLUM BRASILENSE; SOURCE 3 ORGANISM_TAXID: 192 KEYWDS SIGNALING PROTEIN, GLNK-LIKE EXPDTA X-RAY DIFFRACTION AUTHOR D.TRUAN,X.-D.LI,F.K.WINKLER REVDAT 7 20-DEC-23 4CNZ 1 REMARK SHEET REVDAT 6 06-FEB-19 4CNZ 1 REMARK REVDAT 5 30-JAN-19 4CNZ 1 REMARK REVDAT 4 13-AUG-14 4CNZ 1 ATOM ANISOU REVDAT 3 30-JUL-14 4CNZ 1 JRNL REVDAT 2 04-JUN-14 4CNZ 1 JRNL REVDAT 1 28-MAY-14 4CNZ 0 JRNL AUTH D.TRUAN,S.BJELIC,X.LI,F.K.WINKLER JRNL TITL STRUCTURE AND THERMODYNAMICS OF EFFECTOR MOLECULE BINDING TO JRNL TITL 2 THE NITROGEN SIGNAL TRANSDUCTION PII PROTEIN GLNZ FROM JRNL TITL 3 AZOSPIRILLUM BRASILENSE. JRNL REF J.MOL.BIOL. V. 426 2783 2014 JRNL REFN ISSN 0022-2836 JRNL PMID 24846646 JRNL DOI 10.1016/J.JMB.2014.05.008 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 74782 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8299 - 5.0975 0.99 2794 170 0.2168 0.2357 REMARK 3 2 5.0975 - 4.0469 1.00 2688 153 0.1572 0.1870 REMARK 3 3 4.0469 - 3.5356 1.00 2687 143 0.1671 0.1935 REMARK 3 4 3.5356 - 3.2125 1.00 2676 127 0.1674 0.1973 REMARK 3 5 3.2125 - 2.9823 1.00 2697 111 0.1807 0.2284 REMARK 3 6 2.9823 - 2.8065 1.00 2646 146 0.1831 0.2646 REMARK 3 7 2.8065 - 2.6659 1.00 2651 123 0.1997 0.2328 REMARK 3 8 2.6659 - 2.5499 1.00 2641 127 0.1903 0.2542 REMARK 3 9 2.5499 - 2.4517 1.00 2627 147 0.1950 0.2543 REMARK 3 10 2.4517 - 2.3671 1.00 2632 146 0.1885 0.2435 REMARK 3 11 2.3671 - 2.2931 1.00 2592 167 0.1873 0.2337 REMARK 3 12 2.2931 - 2.2276 1.00 2589 159 0.1930 0.2271 REMARK 3 13 2.2276 - 2.1690 1.00 2631 131 0.1956 0.2340 REMARK 3 14 2.1690 - 2.1160 1.00 2635 129 0.1899 0.2623 REMARK 3 15 2.1160 - 2.0679 1.00 2594 136 0.1978 0.2186 REMARK 3 16 2.0679 - 2.0239 1.00 2633 122 0.2052 0.2076 REMARK 3 17 2.0239 - 1.9834 1.00 2631 128 0.2022 0.2506 REMARK 3 18 1.9834 - 1.9460 1.00 2581 131 0.2037 0.2437 REMARK 3 19 1.9460 - 1.9113 1.00 2663 135 0.2013 0.2310 REMARK 3 20 1.9113 - 1.8789 1.00 2564 151 0.2090 0.2364 REMARK 3 21 1.8789 - 1.8485 1.00 2597 142 0.2243 0.2782 REMARK 3 22 1.8485 - 1.8201 1.00 2617 140 0.2397 0.2963 REMARK 3 23 1.8201 - 1.7933 1.00 2578 154 0.2460 0.2685 REMARK 3 24 1.7933 - 1.7681 1.00 2607 137 0.2675 0.3390 REMARK 3 25 1.7681 - 1.7442 1.00 2589 123 0.2625 0.2883 REMARK 3 26 1.7442 - 1.7215 1.00 2583 149 0.2673 0.2897 REMARK 3 27 1.7215 - 1.7000 1.00 2593 139 0.2807 0.3290 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.40 REMARK 3 SHRINKAGE RADIUS : 1.24 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 47.95 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79320 REMARK 3 B22 (A**2) : -2.48500 REMARK 3 B33 (A**2) : 1.69180 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4925 REMARK 3 ANGLE : 1.254 6695 REMARK 3 CHIRALITY : 0.073 817 REMARK 3 PLANARITY : 0.004 831 REMARK 3 DIHEDRAL : 16.929 1861 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A OR CHAIN B OR CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 38.6421 57.5801 18.3688 REMARK 3 T TENSOR REMARK 3 T11: 0.0673 T22: 0.1068 REMARK 3 T33: 0.0824 T12: 0.0204 REMARK 3 T13: -0.0348 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.1166 L22: 1.5061 REMARK 3 L33: 2.0662 L12: 0.1749 REMARK 3 L13: 0.2084 L23: 0.1878 REMARK 3 S TENSOR REMARK 3 S11: -0.0132 S12: 0.0907 S13: 0.0421 REMARK 3 S21: -0.2664 S22: -0.0630 S23: 0.1621 REMARK 3 S31: -0.0809 S32: -0.2414 S33: 0.0157 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN D OR CHAIN E OR CHAIN F REMARK 3 ORIGIN FOR THE GROUP (A): 59.0104 57.3935 41.4811 REMARK 3 T TENSOR REMARK 3 T11: 0.0681 T22: 0.0823 REMARK 3 T33: 0.1129 T12: -0.0083 REMARK 3 T13: -0.0311 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.3614 L22: 1.8054 REMARK 3 L33: 1.5119 L12: 0.0184 REMARK 3 L13: -0.0252 L23: 0.1739 REMARK 3 S TENSOR REMARK 3 S11: 0.0485 S12: -0.1160 S13: 0.0514 REMARK 3 S21: 0.1866 S22: 0.0024 S23: -0.2164 REMARK 3 S31: 0.0185 S32: 0.1028 S33: -0.0184 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CNZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1290059574. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR REMARK 200 OPTICS : VERTICALLY COLLIMATING MIRROR REMARK 200 FOLLOWED BY A BARTELS REMARK 200 MONOCHROMATOR AND A TOROIDAL REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74797 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 43.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.950 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.52 REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 4CNY REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0 MM ADP, 0.02 M CACL, 0.1 M NAAC PH REMARK 280 4.6, 30% MPD, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K, REMARK 280 PH 6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.16200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.84650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.67500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.84650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.16200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.67500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 42 REMARK 465 THR A 43 REMARK 465 GLU A 44 REMARK 465 ILE A 45 REMARK 465 TYR A 46 REMARK 465 ARG A 47 REMARK 465 GLY A 48 REMARK 465 ALA A 49 REMARK 465 GLU A 50 REMARK 465 TYR A 51 REMARK 465 SER A 52 REMARK 465 VAL A 53 REMARK 465 GLN B 42 REMARK 465 THR B 43 REMARK 465 GLU B 44 REMARK 465 ILE B 45 REMARK 465 TYR B 46 REMARK 465 ARG B 47 REMARK 465 GLY B 48 REMARK 465 ALA B 49 REMARK 465 GLU B 50 REMARK 465 TYR B 51 REMARK 465 SER B 52 REMARK 465 VAL B 53 REMARK 465 GLN C 42 REMARK 465 THR C 43 REMARK 465 GLU C 44 REMARK 465 ILE C 45 REMARK 465 TYR C 46 REMARK 465 ARG C 47 REMARK 465 GLY C 48 REMARK 465 ALA C 49 REMARK 465 GLU C 50 REMARK 465 TYR C 51 REMARK 465 SER C 52 REMARK 465 GLN D 42 REMARK 465 THR D 43 REMARK 465 GLU D 44 REMARK 465 ILE D 45 REMARK 465 TYR D 46 REMARK 465 ARG D 47 REMARK 465 GLY D 48 REMARK 465 ALA D 49 REMARK 465 GLU D 50 REMARK 465 TYR D 51 REMARK 465 SER D 52 REMARK 465 VAL D 53 REMARK 465 GLN F 42 REMARK 465 THR F 43 REMARK 465 GLU F 44 REMARK 465 ILE F 45 REMARK 465 TYR F 46 REMARK 465 ARG F 47 REMARK 465 GLY F 48 REMARK 465 ALA F 49 REMARK 465 GLU F 50 REMARK 465 TYR F 51 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 14 OD1 OD2 REMARK 470 GLN A 26 CG CD OE1 NE2 REMARK 470 LYS A 34 NZ REMARK 470 ARG A 38 CD NE CZ NH1 NH2 REMARK 470 LYS A 40 CG CD CE NZ REMARK 470 GLU A 75 CD OE1 OE2 REMARK 470 LYS A 79 CD CE NZ REMARK 470 GLU A 110 OE1 OE2 REMARK 470 GLU B 15 CG CD OE1 OE2 REMARK 470 ARG B 38 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 40 CD CE NZ REMARK 470 SER B 54 OG REMARK 470 LYS B 79 CG CD CE NZ REMARK 470 GLU B 110 CD OE1 OE2 REMARK 470 LYS C 40 CD CE NZ REMARK 470 VAL C 53 CG1 CG2 REMARK 470 LYS C 79 CD CE NZ REMARK 470 ARG D 38 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 40 CG CD CE NZ REMARK 470 GLN D 72 CD OE1 NE2 REMARK 470 GLU E 32 OE1 OE2 REMARK 470 ARG E 47 CG CD NE CZ NH1 NH2 REMARK 470 GLU E 50 CG CD OE1 OE2 REMARK 470 GLN E 72 OE1 NE2 REMARK 470 LYS E 79 CG CD CE NZ REMARK 470 LYS F 40 CG CD CE NZ REMARK 470 SER F 52 OG REMARK 470 VAL F 53 CG1 CG2 REMARK 470 LYS F 79 CG CD CE NZ REMARK 470 ARG F 85 NE CZ NH1 NH2 REMARK 470 GLU F 110 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 2004 O HOH C 2042 2.01 REMARK 500 OE1 GLN C 69 O HOH C 2040 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU C 75 NH2 ARG E 85 3745 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 26 -78.17 -63.04 REMARK 500 ASN A 108 -136.57 55.22 REMARK 500 ASN B 108 -136.18 55.24 REMARK 500 ASN C 108 -138.00 53.57 REMARK 500 ASN D 108 -137.51 57.42 REMARK 500 ASN E 108 -138.19 56.43 REMARK 500 ASN F 108 -140.02 56.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 1113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP C 1113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP D 1113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP E 1113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP F 1113 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CNY RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM BRASILENSE REMARK 900 RELATED ID: 4CO0 RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH ADENOSINE DIPHOSPHATE REMARK 900 RELATED ID: 4CO1 RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH ADENOSINE DIPHOSPHATE REMARK 900 RELATED ID: 4CO2 RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH ADENOSINE DIPHOSPHATE REMARK 900 RELATED ID: 4CO3 RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH ADENOSINE TRIPHOSPHATE REMARK 900 RELATED ID: 4CO4 RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH ADENOSINE TRIPHOSPHATE REMARK 900 RELATED ID: 4CO5 RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH TARTRATE REMARK 900 RELATED ID: 3MHY RELATED DB: PDB DBREF 4CNZ A 1 112 UNP P70731 P70731_AZOBR 1 112 DBREF 4CNZ B 1 112 UNP P70731 P70731_AZOBR 1 112 DBREF 4CNZ C 1 112 UNP P70731 P70731_AZOBR 1 112 DBREF 4CNZ D 1 112 UNP P70731 P70731_AZOBR 1 112 DBREF 4CNZ E 1 112 UNP P70731 P70731_AZOBR 1 112 DBREF 4CNZ F 1 112 UNP P70731 P70731_AZOBR 1 112 SEQRES 1 A 112 MET LYS LEU VAL MET ALA ILE ILE LYS PRO PHE LYS LEU SEQRES 2 A 112 ASP GLU VAL ARG GLU ALA LEU THR SER LEU GLY ILE GLN SEQRES 3 A 112 GLY LEU THR VAL SER GLU VAL LYS GLY PHE GLY ARG GLN SEQRES 4 A 112 LYS GLY GLN THR GLU ILE TYR ARG GLY ALA GLU TYR SER SEQRES 5 A 112 VAL SER PHE LEU PRO LYS VAL LYS VAL GLU VAL ALA VAL SEQRES 6 A 112 SER ASP ASP GLN TYR GLU GLN VAL VAL GLU ALA ILE GLN SEQRES 7 A 112 LYS ALA ALA ASN THR GLY ARG ILE GLY ASP GLY LYS ILE SEQRES 8 A 112 PHE VAL LEU ASP ILE ALA GLN ALA VAL ARG ILE ARG THR SEQRES 9 A 112 GLY GLU THR ASN THR GLU ALA LEU SEQRES 1 B 112 MET LYS LEU VAL MET ALA ILE ILE LYS PRO PHE LYS LEU SEQRES 2 B 112 ASP GLU VAL ARG GLU ALA LEU THR SER LEU GLY ILE GLN SEQRES 3 B 112 GLY LEU THR VAL SER GLU VAL LYS GLY PHE GLY ARG GLN SEQRES 4 B 112 LYS GLY GLN THR GLU ILE TYR ARG GLY ALA GLU TYR SER SEQRES 5 B 112 VAL SER PHE LEU PRO LYS VAL LYS VAL GLU VAL ALA VAL SEQRES 6 B 112 SER ASP ASP GLN TYR GLU GLN VAL VAL GLU ALA ILE GLN SEQRES 7 B 112 LYS ALA ALA ASN THR GLY ARG ILE GLY ASP GLY LYS ILE SEQRES 8 B 112 PHE VAL LEU ASP ILE ALA GLN ALA VAL ARG ILE ARG THR SEQRES 9 B 112 GLY GLU THR ASN THR GLU ALA LEU SEQRES 1 C 112 MET LYS LEU VAL MET ALA ILE ILE LYS PRO PHE LYS LEU SEQRES 2 C 112 ASP GLU VAL ARG GLU ALA LEU THR SER LEU GLY ILE GLN SEQRES 3 C 112 GLY LEU THR VAL SER GLU VAL LYS GLY PHE GLY ARG GLN SEQRES 4 C 112 LYS GLY GLN THR GLU ILE TYR ARG GLY ALA GLU TYR SER SEQRES 5 C 112 VAL SER PHE LEU PRO LYS VAL LYS VAL GLU VAL ALA VAL SEQRES 6 C 112 SER ASP ASP GLN TYR GLU GLN VAL VAL GLU ALA ILE GLN SEQRES 7 C 112 LYS ALA ALA ASN THR GLY ARG ILE GLY ASP GLY LYS ILE SEQRES 8 C 112 PHE VAL LEU ASP ILE ALA GLN ALA VAL ARG ILE ARG THR SEQRES 9 C 112 GLY GLU THR ASN THR GLU ALA LEU SEQRES 1 D 112 MET LYS LEU VAL MET ALA ILE ILE LYS PRO PHE LYS LEU SEQRES 2 D 112 ASP GLU VAL ARG GLU ALA LEU THR SER LEU GLY ILE GLN SEQRES 3 D 112 GLY LEU THR VAL SER GLU VAL LYS GLY PHE GLY ARG GLN SEQRES 4 D 112 LYS GLY GLN THR GLU ILE TYR ARG GLY ALA GLU TYR SER SEQRES 5 D 112 VAL SER PHE LEU PRO LYS VAL LYS VAL GLU VAL ALA VAL SEQRES 6 D 112 SER ASP ASP GLN TYR GLU GLN VAL VAL GLU ALA ILE GLN SEQRES 7 D 112 LYS ALA ALA ASN THR GLY ARG ILE GLY ASP GLY LYS ILE SEQRES 8 D 112 PHE VAL LEU ASP ILE ALA GLN ALA VAL ARG ILE ARG THR SEQRES 9 D 112 GLY GLU THR ASN THR GLU ALA LEU SEQRES 1 E 112 MET LYS LEU VAL MET ALA ILE ILE LYS PRO PHE LYS LEU SEQRES 2 E 112 ASP GLU VAL ARG GLU ALA LEU THR SER LEU GLY ILE GLN SEQRES 3 E 112 GLY LEU THR VAL SER GLU VAL LYS GLY PHE GLY ARG GLN SEQRES 4 E 112 LYS GLY GLN THR GLU ILE TYR ARG GLY ALA GLU TYR SER SEQRES 5 E 112 VAL SER PHE LEU PRO LYS VAL LYS VAL GLU VAL ALA VAL SEQRES 6 E 112 SER ASP ASP GLN TYR GLU GLN VAL VAL GLU ALA ILE GLN SEQRES 7 E 112 LYS ALA ALA ASN THR GLY ARG ILE GLY ASP GLY LYS ILE SEQRES 8 E 112 PHE VAL LEU ASP ILE ALA GLN ALA VAL ARG ILE ARG THR SEQRES 9 E 112 GLY GLU THR ASN THR GLU ALA LEU SEQRES 1 F 112 MET LYS LEU VAL MET ALA ILE ILE LYS PRO PHE LYS LEU SEQRES 2 F 112 ASP GLU VAL ARG GLU ALA LEU THR SER LEU GLY ILE GLN SEQRES 3 F 112 GLY LEU THR VAL SER GLU VAL LYS GLY PHE GLY ARG GLN SEQRES 4 F 112 LYS GLY GLN THR GLU ILE TYR ARG GLY ALA GLU TYR SER SEQRES 5 F 112 VAL SER PHE LEU PRO LYS VAL LYS VAL GLU VAL ALA VAL SEQRES 6 F 112 SER ASP ASP GLN TYR GLU GLN VAL VAL GLU ALA ILE GLN SEQRES 7 F 112 LYS ALA ALA ASN THR GLY ARG ILE GLY ASP GLY LYS ILE SEQRES 8 F 112 PHE VAL LEU ASP ILE ALA GLN ALA VAL ARG ILE ARG THR SEQRES 9 F 112 GLY GLU THR ASN THR GLU ALA LEU HET ADP A1113 27 HET ADP B1113 27 HET ADP C1113 27 HET ADP D1113 27 HET ADP E1113 27 HET ADP F1113 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 7 ADP 6(C10 H15 N5 O10 P2) FORMUL 13 HOH *394(H2 O) HELIX 1 1 LYS A 9 PHE A 11 5 3 HELIX 2 2 LYS A 12 LEU A 23 1 12 HELIX 3 3 GLN A 69 ASN A 82 1 14 HELIX 4 4 ASN A 108 LEU A 112 5 5 HELIX 5 5 LYS B 9 PHE B 11 5 3 HELIX 6 6 LYS B 12 LEU B 23 1 12 HELIX 7 7 GLN B 69 ASN B 82 1 14 HELIX 8 8 ASN B 108 LEU B 112 5 5 HELIX 9 9 LYS C 9 PHE C 11 5 3 HELIX 10 10 LYS C 12 LEU C 23 1 12 HELIX 11 11 GLN C 69 ASN C 82 1 14 HELIX 12 12 ASN C 108 LEU C 112 5 5 HELIX 13 13 LYS D 9 PHE D 11 5 3 HELIX 14 14 LYS D 12 LEU D 23 1 12 HELIX 15 15 GLN D 69 ASN D 82 1 14 HELIX 16 16 ASN D 108 LEU D 112 5 5 HELIX 17 17 LYS E 9 PHE E 11 5 3 HELIX 18 18 LYS E 12 LEU E 23 1 12 HELIX 19 19 GLY E 41 ARG E 47 1 7 HELIX 20 20 GLN E 69 ASN E 82 1 14 HELIX 21 21 ASN E 108 LEU E 112 5 5 HELIX 22 22 LYS F 9 PHE F 11 5 3 HELIX 23 23 LYS F 12 LEU F 23 1 12 HELIX 24 24 GLN F 69 ASN F 82 1 14 HELIX 25 25 ASN F 108 LEU F 112 5 5 SHEET 1 AA 6 GLN A 98 ARG A 101 0 SHEET 2 AA 6 LYS B 90 ASP B 95 -1 O ILE B 91 N VAL A 100 SHEET 3 AA 6 LYS B 2 ILE B 8 -1 O LEU B 3 N LEU B 94 SHEET 4 AA 6 LEU B 56 VAL B 65 -1 O VAL B 59 N ILE B 8 SHEET 5 AA 6 LEU B 28 PHE B 36 -1 O THR B 29 N GLU B 62 SHEET 6 AA 6 LEU A 28 PHE A 36 -1 O LEU A 28 N PHE B 36 SHEET 1 AB 2 GLN A 98 ARG A 101 0 SHEET 2 AB 2 LEU C 28 PHE C 36 1 O LYS C 34 N VAL B 30 SHEET 1 DA 6 GLN D 98 ARG D 101 0 SHEET 2 DA 6 LYS E 90 ASP E 95 -1 O ILE E 91 N VAL D 100 SHEET 3 DA 6 LYS E 2 ILE E 8 -1 O LEU E 3 N LEU E 94 SHEET 4 DA 6 LEU E 56 VAL E 65 -1 O VAL E 59 N ILE E 8 SHEET 5 DA 6 LEU E 28 PHE E 36 -1 O THR E 29 N GLU E 62 SHEET 6 DA 6 LEU D 28 PHE D 36 -1 O LEU D 28 N PHE E 36 SHEET 1 DB 2 GLN D 98 ARG D 101 0 SHEET 2 DB 2 LEU F 28 PHE F 36 1 O LYS F 34 N VAL E 30 SITE 1 AC1 24 ILE A 7 GLY A 35 PHE A 36 GLY A 37 SITE 2 AC1 24 ARG A 38 GLN A 39 LYS A 58 ILE A 86 SITE 3 AC1 24 GLY A 87 ASP A 88 GLY A 89 LYS A 90 SITE 4 AC1 24 HOH A2038 HOH A2055 HOH A2056 HOH A2081 SITE 5 AC1 24 GLY C 27 LEU C 28 THR C 29 GLU C 62 SITE 6 AC1 24 VAL C 63 ALA C 64 ARG C 101 ARG C 103 SITE 1 AC2 22 GLY A 27 LEU A 28 THR A 29 GLU A 62 SITE 2 AC2 22 VAL A 63 ALA A 64 ARG A 101 ARG A 103 SITE 3 AC2 22 HOH A2071 HOH A2072 ILE B 7 GLY B 35 SITE 4 AC2 22 PHE B 36 ARG B 38 GLN B 39 LYS B 58 SITE 5 AC2 22 GLY B 87 ASP B 88 GLY B 89 LYS B 90 SITE 6 AC2 22 HOH B2045 HOH B2067 SITE 1 AC3 23 GLY B 27 LEU B 28 THR B 29 GLU B 62 SITE 2 AC3 23 VAL B 63 ALA B 64 ARG B 101 ARG B 103 SITE 3 AC3 23 HOH B2018 HOH B2055 HOH B2057 ILE C 7 SITE 4 AC3 23 GLY C 35 PHE C 36 ARG C 38 GLN C 39 SITE 5 AC3 23 LYS C 58 ILE C 86 GLY C 87 ASP C 88 SITE 6 AC3 23 GLY C 89 LYS C 90 HOH C2038 SITE 1 AC4 24 ILE D 7 GLY D 35 PHE D 36 GLY D 37 SITE 2 AC4 24 ARG D 38 GLN D 39 LYS D 58 GLY D 87 SITE 3 AC4 24 ASP D 88 GLY D 89 LYS D 90 HOH D2028 SITE 4 AC4 24 HOH D2048 HOH D2049 HOH D2059 HOH D2060 SITE 5 AC4 24 GLY F 27 LEU F 28 THR F 29 GLU F 62 SITE 6 AC4 24 VAL F 63 ALA F 64 ARG F 101 ARG F 103 SITE 1 AC5 24 GLY D 27 LEU D 28 THR D 29 GLU D 62 SITE 2 AC5 24 VAL D 63 ALA D 64 ARG D 101 ARG D 103 SITE 3 AC5 24 HOH D2017 HOH D2054 ILE E 7 GLY E 35 SITE 4 AC5 24 PHE E 36 GLY E 37 ARG E 38 GLN E 39 SITE 5 AC5 24 LYS E 58 ILE E 86 GLY E 87 ASP E 88 SITE 6 AC5 24 GLY E 89 LYS E 90 HOH E2024 HOH E2045 SITE 1 AC6 22 GLY E 27 LEU E 28 THR E 29 GLU E 62 SITE 2 AC6 22 VAL E 63 ALA E 64 ARG E 101 ARG E 103 SITE 3 AC6 22 HOH E2050 HOH E2052 HOH E2060 ILE F 7 SITE 4 AC6 22 GLY F 35 PHE F 36 ARG F 38 GLN F 39 SITE 5 AC6 22 LYS F 58 GLY F 87 ASP F 88 GLY F 89 SITE 6 AC6 22 LYS F 90 HOH F2050 CRYST1 64.324 87.350 119.693 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015546 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011448 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008355 0.00000