HEADER SIGNALING PROTEIN 25-JAN-14 4CO0 TITLE STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM BRASILENSE TITLE 2 IN COMPLEX WITH ADENOSINE DIPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PII-LIKE PROTEIN PZ; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AZOSPIRILLUM BRASILENSE; SOURCE 3 ORGANISM_TAXID: 192 KEYWDS SIGNALING PROTEIN, GLNK-LIKE EXPDTA X-RAY DIFFRACTION AUTHOR D.TRUAN,X.-D.LI,F.K.WINKLER REVDAT 6 20-DEC-23 4CO0 1 REMARK REVDAT 5 06-FEB-19 4CO0 1 REMARK REVDAT 4 30-JAN-19 4CO0 1 REMARK REVDAT 3 30-JUL-14 4CO0 1 JRNL REVDAT 2 04-JUN-14 4CO0 1 JRNL REVDAT 1 28-MAY-14 4CO0 0 JRNL AUTH D.TRUAN,S.BJELIC,X.LI,F.K.WINKLER JRNL TITL STRUCTURE AND THERMODYNAMICS OF EFFECTOR MOLECULE BINDING TO JRNL TITL 2 THE NITROGEN SIGNAL TRANSDUCTION PII PROTEIN GLNZ FROM JRNL TITL 3 AZOSPIRILLUM BRASILENSE. JRNL REF J.MOL.BIOL. V. 426 2783 2014 JRNL REFN ISSN 0022-2836 JRNL PMID 24846646 JRNL DOI 10.1016/J.JMB.2014.05.008 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 35124 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1757 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8747 - 3.2905 0.86 2257 119 0.1913 0.2285 REMARK 3 2 3.2905 - 2.6123 1.00 2615 138 0.1963 0.2349 REMARK 3 3 2.6123 - 2.2822 0.99 2587 136 0.2007 0.2184 REMARK 3 4 2.2822 - 2.0736 0.97 2533 133 0.2236 0.2788 REMARK 3 5 2.0736 - 1.9250 0.98 2555 135 0.2140 0.2446 REMARK 3 6 1.9250 - 1.8115 0.95 2494 131 0.2547 0.2570 REMARK 3 7 1.8115 - 1.7208 1.00 2622 138 0.2040 0.2449 REMARK 3 8 1.7208 - 1.6459 1.00 2615 138 0.2103 0.2544 REMARK 3 9 1.6459 - 1.5826 1.00 2631 138 0.2154 0.2520 REMARK 3 10 1.5826 - 1.5279 1.00 2612 138 0.2238 0.2623 REMARK 3 11 1.5279 - 1.4802 1.00 2619 138 0.2582 0.2926 REMARK 3 12 1.4802 - 1.4379 1.00 2584 135 0.2944 0.3207 REMARK 3 13 1.4379 - 1.4000 1.00 2643 140 0.2777 0.3138 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 68.08 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.43690 REMARK 3 B22 (A**2) : -0.43690 REMARK 3 B33 (A**2) : 0.87390 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1725 REMARK 3 ANGLE : 1.178 2349 REMARK 3 CHIRALITY : 0.072 289 REMARK 3 PLANARITY : 0.004 288 REMARK 3 DIHEDRAL : 16.881 639 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -8.3681 4.4005 -4.5904 REMARK 3 T TENSOR REMARK 3 T11: 0.0832 T22: 0.1047 REMARK 3 T33: 0.1003 T12: -0.0019 REMARK 3 T13: -0.0045 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.6655 L22: 1.2652 REMARK 3 L33: 0.9989 L12: 0.0776 REMARK 3 L13: -0.3059 L23: 0.1142 REMARK 3 S TENSOR REMARK 3 S11: 0.0559 S12: -0.0105 S13: 0.0104 REMARK 3 S21: -0.0391 S22: -0.0422 S23: -0.0031 REMARK 3 S31: -0.0537 S32: -0.0668 S33: 0.0160 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -0.3547 -9.1680 26.1905 REMARK 3 T TENSOR REMARK 3 T11: 0.1472 T22: 0.1061 REMARK 3 T33: 0.1223 T12: -0.0035 REMARK 3 T13: -0.0108 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.3504 L22: 0.6143 REMARK 3 L33: 1.3850 L12: 0.2394 REMARK 3 L13: -0.2036 L23: 0.2543 REMARK 3 S TENSOR REMARK 3 S11: -0.1459 S12: 0.0460 S13: -0.0957 REMARK 3 S21: -0.0016 S22: 0.0843 S23: 0.0508 REMARK 3 S31: 0.1795 S32: -0.0697 S33: 0.0707 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CO0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1290059575. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR REMARK 200 OPTICS : VERTICALLY COLLIMATING MIRROR REMARK 200 FOLLOWED BY A BARTELS REMARK 200 MONOCHROMATOR AND TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35124 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 29.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.33 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4CNY REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 MM MNCL2, 5MM 2OG, 5 MMATP, 0.2 M REMARK 280 K/NA TARTRATE, 200% PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.27500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.98483 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 21.71000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 43.27500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 24.98483 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 21.71000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 43.27500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 24.98483 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.71000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.96967 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 43.42000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 49.96967 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 43.42000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 49.96967 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 43.42000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2067 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 39 REMARK 465 LYS A 40 REMARK 465 GLY A 41 REMARK 465 GLN B 39 REMARK 465 LYS B 40 REMARK 465 GLY B 41 REMARK 465 GLN B 42 REMARK 465 THR B 43 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 LYS A 34 CD CE NZ REMARK 470 ARG A 38 CG CD NE CZ NH1 NH2 REMARK 470 THR A 43 OG1 CG2 REMARK 470 ILE A 45 CG1 CG2 CD1 REMARK 470 ARG A 47 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 50 CG CD OE1 OE2 REMARK 470 GLU A 75 CD OE1 OE2 REMARK 470 ARG A 85 CD NE CZ NH1 NH2 REMARK 470 GLN A 98 CD OE1 NE2 REMARK 470 LYS B 2 NZ REMARK 470 ASP B 14 CG OD1 OD2 REMARK 470 GLU B 15 CG CD OE1 OE2 REMARK 470 GLU B 18 OE1 OE2 REMARK 470 GLN B 26 CG CD OE1 NE2 REMARK 470 ARG B 38 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 50 CD OE1 OE2 REMARK 470 LEU B 56 CD1 CD2 REMARK 470 GLN B 78 CD OE1 NE2 REMARK 470 LYS B 79 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2122 O HOH B 2127 1.90 REMARK 500 O HOH B 2117 O HOH B 2130 1.91 REMARK 500 O HOH B 2102 O HOH B 2103 1.94 REMARK 500 O HOH B 2124 O HOH B 2135 1.94 REMARK 500 O HOH B 2124 O HOH B 2125 1.98 REMARK 500 O HOH B 2126 O HOH B 2127 2.00 REMARK 500 O HOH B 2110 O HOH B 2112 2.00 REMARK 500 OE1 GLU A 15 O HOH A 2020 2.01 REMARK 500 O HOH A 2095 O HOH A 2096 2.02 REMARK 500 O HOH B 2035 O HOH B 2098 2.03 REMARK 500 OXT LEU B 112 O HOH B 2036 2.03 REMARK 500 O HOH B 2028 O HOH B 2082 2.07 REMARK 500 OH TYR A 46 O HOH A 2082 2.10 REMARK 500 OE1 GLU B 110 O HOH B 2131 2.10 REMARK 500 O HOH B 2018 O HOH B 2055 2.11 REMARK 500 N GLU B 44 O HOH B 2062 2.12 REMARK 500 OE1 GLN A 26 O HOH A 2049 2.14 REMARK 500 O HOH B 2107 O HOH B 2108 2.16 REMARK 500 O3B ADP B 113 O HOH B 2138 2.16 REMARK 500 NE2 GLN A 78 O HOH A 2111 2.18 REMARK 500 O HOH A 2130 O HOH A 2131 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2044 O HOH B 2044 3555 1.55 REMARK 500 O HOH A 2096 O HOH B 2134 1554 1.80 REMARK 500 O HOH B 2085 O HOH B 2085 3555 1.82 REMARK 500 O HOH A 2108 O HOH B 2118 5454 1.95 REMARK 500 O HOH B 2004 O HOH B 2072 3555 2.05 REMARK 500 O HOH A 2018 O HOH A 2037 2555 2.08 REMARK 500 O HOH B 2030 O HOH B 2064 5445 2.10 REMARK 500 O HOH A 2131 O HOH B 2094 1554 2.11 REMARK 500 O HOH A 2074 O HOH B 2033 1554 2.12 REMARK 500 OD2 ASP A 68 O HOH B 2131 1554 2.13 REMARK 500 O ILE A 45 NH1 ARG B 85 2555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 108 -132.18 56.60 REMARK 500 ASN B 108 -125.70 47.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2075 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A2076 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH B2033 DISTANCE = 6.63 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA B 1113 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CNY RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM BRASILENSE REMARK 900 RELATED ID: 4CNZ RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH ADENOSINE DIPHOSPHATE REMARK 900 RELATED ID: 4CO1 RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH ADENOSINE DIPHOSPHATE REMARK 900 RELATED ID: 4CO2 RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH ADENOSINE DIPHOSPHATE REMARK 900 RELATED ID: 4CO3 RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH ADENOSINE TRIPHOSPHATE REMARK 900 RELATED ID: 4CO4 RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH ADENOSINE TRIPHOSPHATE REMARK 900 RELATED ID: 4CO5 RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH TARTRATE REMARK 900 RELATED ID: 3MHY RELATED DB: PDB DBREF 4CO0 A 1 112 UNP P70731 P70731_AZOBR 1 112 DBREF 4CO0 B 1 112 UNP P70731 P70731_AZOBR 1 112 SEQRES 1 A 112 MET LYS LEU VAL MET ALA ILE ILE LYS PRO PHE LYS LEU SEQRES 2 A 112 ASP GLU VAL ARG GLU ALA LEU THR SER LEU GLY ILE GLN SEQRES 3 A 112 GLY LEU THR VAL SER GLU VAL LYS GLY PHE GLY ARG GLN SEQRES 4 A 112 LYS GLY GLN THR GLU ILE TYR ARG GLY ALA GLU TYR SER SEQRES 5 A 112 VAL SER PHE LEU PRO LYS VAL LYS VAL GLU VAL ALA VAL SEQRES 6 A 112 SER ASP ASP GLN TYR GLU GLN VAL VAL GLU ALA ILE GLN SEQRES 7 A 112 LYS ALA ALA ASN THR GLY ARG ILE GLY ASP GLY LYS ILE SEQRES 8 A 112 PHE VAL LEU ASP ILE ALA GLN ALA VAL ARG ILE ARG THR SEQRES 9 A 112 GLY GLU THR ASN THR GLU ALA LEU SEQRES 1 B 112 MET LYS LEU VAL MET ALA ILE ILE LYS PRO PHE LYS LEU SEQRES 2 B 112 ASP GLU VAL ARG GLU ALA LEU THR SER LEU GLY ILE GLN SEQRES 3 B 112 GLY LEU THR VAL SER GLU VAL LYS GLY PHE GLY ARG GLN SEQRES 4 B 112 LYS GLY GLN THR GLU ILE TYR ARG GLY ALA GLU TYR SER SEQRES 5 B 112 VAL SER PHE LEU PRO LYS VAL LYS VAL GLU VAL ALA VAL SEQRES 6 B 112 SER ASP ASP GLN TYR GLU GLN VAL VAL GLU ALA ILE GLN SEQRES 7 B 112 LYS ALA ALA ASN THR GLY ARG ILE GLY ASP GLY LYS ILE SEQRES 8 B 112 PHE VAL LEU ASP ILE ALA GLN ALA VAL ARG ILE ARG THR SEQRES 9 B 112 GLY GLU THR ASN THR GLU ALA LEU HET ADP A 113 27 HET ADP B 113 27 HET TLA B1113 10 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM TLA L(+)-TARTARIC ACID FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 5 TLA C4 H6 O6 FORMUL 6 HOH *271(H2 O) HELIX 1 1 LYS A 9 PHE A 11 5 3 HELIX 2 2 LYS A 12 LEU A 23 1 12 HELIX 3 3 GLN A 69 ASN A 82 1 14 HELIX 4 4 ASN A 108 LEU A 112 5 5 HELIX 5 5 LYS B 9 PHE B 11 5 3 HELIX 6 6 LYS B 12 LEU B 23 1 12 HELIX 7 7 GLN B 69 ASN B 82 1 14 HELIX 8 8 ASN B 108 LEU B 112 5 5 SHEET 1 AA 4 THR A 29 GLY A 35 0 SHEET 2 AA 4 LEU A 56 VAL A 65 -1 O LEU A 56 N GLY A 35 SHEET 3 AA 4 LYS A 2 ILE A 8 -1 O LYS A 2 N VAL A 65 SHEET 4 AA 4 LYS A 90 ASP A 95 -1 O LYS A 90 N ILE A 7 SHEET 1 AB 2 THR A 43 TYR A 46 0 SHEET 2 AB 2 ALA A 49 SER A 52 -1 O ALA A 49 N TYR A 46 SHEET 1 BA 4 THR B 29 GLY B 35 0 SHEET 2 BA 4 LEU B 56 VAL B 65 -1 O LEU B 56 N GLY B 35 SHEET 3 BA 4 LYS B 2 ILE B 8 -1 O LYS B 2 N VAL B 65 SHEET 4 BA 4 LYS B 90 ASP B 95 -1 O LYS B 90 N ILE B 7 SHEET 1 BB 2 ILE B 45 TYR B 46 0 SHEET 2 BB 2 ALA B 49 GLU B 50 -1 O ALA B 49 N TYR B 46 SITE 1 AC1 21 ILE A 7 GLY A 27 LEU A 28 THR A 29 SITE 2 AC1 21 GLY A 35 PHE A 36 ARG A 38 LYS A 58 SITE 3 AC1 21 GLU A 62 VAL A 63 ALA A 64 ILE A 86 SITE 4 AC1 21 GLY A 87 GLY A 89 LYS A 90 ARG A 101 SITE 5 AC1 21 ARG A 103 LEU A 112 HOH A2068 HOH A2122 SITE 6 AC1 21 HOH A2124 SITE 1 AC2 24 ILE B 7 GLY B 27 LEU B 28 THR B 29 SITE 2 AC2 24 GLY B 35 PHE B 36 ARG B 38 LYS B 58 SITE 3 AC2 24 GLU B 62 VAL B 63 ALA B 64 ILE B 86 SITE 4 AC2 24 GLY B 87 ASP B 88 GLY B 89 LYS B 90 SITE 5 AC2 24 ARG B 101 ARG B 103 LEU B 112 HOH B2036 SITE 6 AC2 24 HOH B2051 HOH B2052 HOH B2113 HOH B2138 SITE 1 AC3 13 MET A 1 SER A 66 ASP A 67 THR A 109 SITE 2 AC3 13 HOH A2095 HOH A2096 HOH A2102 MET B 1 SITE 3 AC3 13 SER B 66 ASP B 67 THR B 109 HOH B2133 SITE 4 AC3 13 HOH B2134 CRYST1 86.550 86.550 65.130 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011554 0.006671 0.000000 0.00000 SCALE2 0.000000 0.013341 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015354 0.00000