HEADER SIGNALING PROTEIN 25-JAN-14 4CO2 TITLE STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM BRASILENSE TITLE 2 IN COMPLEX WITH ADENOSINE DIPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PII-LIKE PROTEIN PZ; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AZOSPIRILLUM BRASILENSE; SOURCE 3 ORGANISM_TAXID: 192 KEYWDS SIGNALING PROTEIN, GLNK-LIKE EXPDTA X-RAY DIFFRACTION AUTHOR D.TRUAN,X.-D.LI,F.K.WINKLER REVDAT 6 20-DEC-23 4CO2 1 REMARK REVDAT 5 06-FEB-19 4CO2 1 REMARK REVDAT 4 30-JAN-19 4CO2 1 REMARK REVDAT 3 30-JUL-14 4CO2 1 JRNL REVDAT 2 04-JUN-14 4CO2 1 JRNL REVDAT 1 28-MAY-14 4CO2 0 JRNL AUTH D.TRUAN,S.BJELIC,X.LI,F.K.WINKLER JRNL TITL STRUCTURE AND THERMODYNAMICS OF EFFECTOR MOLECULE BINDING TO JRNL TITL 2 THE NITROGEN SIGNAL TRANSDUCTION PII PROTEIN GLNZ FROM JRNL TITL 3 AZOSPIRILLUM BRASILENSE. JRNL REF J.MOL.BIOL. V. 426 2783 2014 JRNL REFN ISSN 0022-2836 JRNL PMID 24846646 JRNL DOI 10.1016/J.JMB.2014.05.008 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 18404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.5255 - 3.4424 1.00 2507 132 0.1565 0.1656 REMARK 3 2 3.4424 - 2.7327 1.00 2509 133 0.1705 0.2285 REMARK 3 3 2.7327 - 2.3874 1.00 2518 132 0.1815 0.2275 REMARK 3 4 2.3874 - 2.1692 0.97 2430 128 0.2041 0.2525 REMARK 3 5 2.1692 - 2.0137 1.00 2514 132 0.1756 0.2298 REMARK 3 6 2.0137 - 1.8950 0.99 2471 130 0.2416 0.3084 REMARK 3 7 1.8950 - 1.8001 1.00 2534 134 0.2131 0.2616 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1759 REMARK 3 ANGLE : 1.289 2380 REMARK 3 CHIRALITY : 0.083 288 REMARK 3 PLANARITY : 0.005 289 REMARK 3 DIHEDRAL : 16.382 649 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 8.2210 -4.1704 26.9934 REMARK 3 T TENSOR REMARK 3 T11: 0.1333 T22: 0.1120 REMARK 3 T33: 0.1667 T12: 0.0271 REMARK 3 T13: 0.0033 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.6857 L22: 0.8028 REMARK 3 L33: 1.1844 L12: 0.0280 REMARK 3 L13: 0.4451 L23: 0.3249 REMARK 3 S TENSOR REMARK 3 S11: -0.0126 S12: -0.0911 S13: -0.0468 REMARK 3 S21: -0.0663 S22: -0.0401 S23: -0.0834 REMARK 3 S31: 0.1662 S32: 0.1899 S33: -0.0038 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 6.5105 -6.6575 64.8543 REMARK 3 T TENSOR REMARK 3 T11: 0.1970 T22: 0.2519 REMARK 3 T33: 0.1698 T12: 0.0105 REMARK 3 T13: 0.0228 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 0.6326 L22: 0.6056 REMARK 3 L33: 0.9299 L12: -0.0446 REMARK 3 L13: 0.3698 L23: 0.1244 REMARK 3 S TENSOR REMARK 3 S11: 0.0405 S12: 0.0540 S13: -0.0743 REMARK 3 S21: -0.1909 S22: -0.0424 S23: -0.0206 REMARK 3 S31: 0.1612 S32: 0.2164 S33: 0.0011 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CO2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1290059577. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR REMARK 200 OPTICS : VERTICALLY COLLIMATING MIRROR REMARK 200 FOLLOWED BY A BARTELS REMARK 200 MONOCHROMATOR AND TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18406 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 33.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.720 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.74 REMARK 200 R MERGE FOR SHELL (I) : 0.75000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4CNY REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM MGCL2, 5 MM ATP, 0.1 M TRIS-HCL REMARK 280 PH 8.5, 30% PEG 300, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.67500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.79312 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.37333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 44.67500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 25.79312 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.37333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 44.67500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 25.79312 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.37333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.58625 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 44.74667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 51.58625 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 44.74667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 51.58625 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 44.74667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2010 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2049 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2050 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2018 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2023 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 14 OD1 OD2 REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 GLN A 26 CG CD OE1 NE2 REMARK 470 ARG A 38 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 40 CG CD CE NZ REMARK 470 ASP A 68 CG OD1 OD2 REMARK 470 GLU A 71 OE1 OE2 REMARK 470 GLN A 72 CG CD OE1 NE2 REMARK 470 GLU A 75 OE1 OE2 REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 ASP A 95 OD1 OD2 REMARK 470 ASN A 108 CG OD1 ND2 REMARK 470 GLU B 18 CG CD OE1 OE2 REMARK 470 ARG B 38 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 40 NZ REMARK 470 GLU B 50 OE1 OE2 REMARK 470 ASP B 68 CG OD1 OD2 REMARK 470 GLN B 72 CD OE1 NE2 REMARK 470 GLU B 75 CG CD OE1 OE2 REMARK 470 LYS B 79 CG CD CE NZ REMARK 470 ARG B 85 CD NE CZ NH1 NH2 REMARK 470 GLU B 110 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2070 O HOH A 2071 1.89 REMARK 500 OD1 ASP B 14 O HOH B 2010 1.92 REMARK 500 OE1 GLU A 110 O HOH A 2069 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2039 O HOH B 2004 2554 1.99 REMARK 500 O HOH A 2019 O HOH A 2040 4445 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 108 -137.75 52.61 REMARK 500 ASN B 108 -127.78 45.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 114 REMARK 610 PG4 B 114 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 114 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CNY RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM BRASILENSE REMARK 900 RELATED ID: 4CNZ RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH ADENOSINE DIPHOSPHATE REMARK 900 RELATED ID: 4CO0 RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH ADENOSINE DIPHOSPHATE REMARK 900 RELATED ID: 4CO1 RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH ADENOSINE DIPHOSPHATE REMARK 900 RELATED ID: 4CO3 RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH ADENOSINE TRIPHOSPHATE REMARK 900 RELATED ID: 4CO4 RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH ADENOSINE TRIPHOSPHATE REMARK 900 RELATED ID: 4CO5 RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH TARTRATE REMARK 900 RELATED ID: 3MHY RELATED DB: PDB DBREF 4CO2 A 1 112 UNP P70731 P70731_AZOBR 1 112 DBREF 4CO2 B 1 112 UNP P70731 P70731_AZOBR 1 112 SEQRES 1 A 112 MET LYS LEU VAL MET ALA ILE ILE LYS PRO PHE LYS LEU SEQRES 2 A 112 ASP GLU VAL ARG GLU ALA LEU THR SER LEU GLY ILE GLN SEQRES 3 A 112 GLY LEU THR VAL SER GLU VAL LYS GLY PHE GLY ARG GLN SEQRES 4 A 112 LYS GLY GLN THR GLU ILE TYR ARG GLY ALA GLU TYR SER SEQRES 5 A 112 VAL SER PHE LEU PRO LYS VAL LYS VAL GLU VAL ALA VAL SEQRES 6 A 112 SER ASP ASP GLN TYR GLU GLN VAL VAL GLU ALA ILE GLN SEQRES 7 A 112 LYS ALA ALA ASN THR GLY ARG ILE GLY ASP GLY LYS ILE SEQRES 8 A 112 PHE VAL LEU ASP ILE ALA GLN ALA VAL ARG ILE ARG THR SEQRES 9 A 112 GLY GLU THR ASN THR GLU ALA LEU SEQRES 1 B 112 MET LYS LEU VAL MET ALA ILE ILE LYS PRO PHE LYS LEU SEQRES 2 B 112 ASP GLU VAL ARG GLU ALA LEU THR SER LEU GLY ILE GLN SEQRES 3 B 112 GLY LEU THR VAL SER GLU VAL LYS GLY PHE GLY ARG GLN SEQRES 4 B 112 LYS GLY GLN THR GLU ILE TYR ARG GLY ALA GLU TYR SER SEQRES 5 B 112 VAL SER PHE LEU PRO LYS VAL LYS VAL GLU VAL ALA VAL SEQRES 6 B 112 SER ASP ASP GLN TYR GLU GLN VAL VAL GLU ALA ILE GLN SEQRES 7 B 112 LYS ALA ALA ASN THR GLY ARG ILE GLY ASP GLY LYS ILE SEQRES 8 B 112 PHE VAL LEU ASP ILE ALA GLN ALA VAL ARG ILE ARG THR SEQRES 9 B 112 GLY GLU THR ASN THR GLU ALA LEU HET ADP A 113 27 HET PG4 A 114 11 HET ADP B 113 27 HET PG4 B 114 10 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 PG4 2(C8 H18 O5) FORMUL 7 HOH *126(H2 O) HELIX 1 1 LYS A 9 PHE A 11 5 3 HELIX 2 2 LYS A 12 LEU A 23 1 12 HELIX 3 3 SER A 66 ASN A 82 1 17 HELIX 4 4 ASN A 108 LEU A 112 5 5 HELIX 5 5 LYS B 9 PHE B 11 5 3 HELIX 6 6 LYS B 12 LEU B 23 1 12 HELIX 7 7 GLN B 69 ASN B 82 1 14 HELIX 8 8 ASN B 108 LEU B 112 5 5 SHEET 1 AA 4 THR A 29 GLY A 35 0 SHEET 2 AA 4 LEU A 56 VAL A 65 -1 O LEU A 56 N GLY A 35 SHEET 3 AA 4 LYS A 2 ILE A 8 -1 O LYS A 2 N VAL A 65 SHEET 4 AA 4 LYS A 90 ASP A 95 -1 O LYS A 90 N ILE A 7 SHEET 1 AB 2 THR A 43 TYR A 46 0 SHEET 2 AB 2 ALA A 49 SER A 52 -1 O ALA A 49 N TYR A 46 SHEET 1 BA 4 THR B 29 GLY B 35 0 SHEET 2 BA 4 LEU B 56 VAL B 65 -1 O LEU B 56 N GLY B 35 SHEET 3 BA 4 LYS B 2 ILE B 8 -1 O LYS B 2 N VAL B 65 SHEET 4 BA 4 LYS B 90 ASP B 95 -1 O LYS B 90 N ILE B 7 SHEET 1 BB 2 THR B 43 TYR B 46 0 SHEET 2 BB 2 ALA B 49 SER B 52 -1 O ALA B 49 N TYR B 46 SITE 1 AC1 23 ILE A 7 GLY A 27 LEU A 28 THR A 29 SITE 2 AC1 23 GLY A 35 PHE A 36 ARG A 38 GLN A 39 SITE 3 AC1 23 LYS A 58 GLU A 62 VAL A 63 ALA A 64 SITE 4 AC1 23 ILE A 86 GLY A 87 ASP A 88 GLY A 89 SITE 5 AC1 23 LYS A 90 ARG A 101 ARG A 103 HOH A2029 SITE 6 AC1 23 HOH A2064 HOH A2065 HOH A2072 SITE 1 AC2 5 VAL A 30 GLU A 32 LYS A 34 HOH A2025 SITE 2 AC2 5 HOH B2052 SITE 1 AC3 21 GLY B 27 LEU B 28 THR B 29 GLY B 35 SITE 2 AC3 21 PHE B 36 ARG B 38 GLN B 39 LYS B 58 SITE 3 AC3 21 GLU B 62 VAL B 63 ALA B 64 ILE B 86 SITE 4 AC3 21 GLY B 87 ASP B 88 GLY B 89 LYS B 90 SITE 5 AC3 21 ARG B 101 ARG B 103 HOH B2021 HOH B2043 SITE 6 AC3 21 HOH B2051 SITE 1 AC4 6 VAL B 30 SER B 31 GLU B 32 LYS B 34 SITE 2 AC4 6 HOH B2052 HOH B2053 CRYST1 89.350 89.350 67.120 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011192 0.006462 0.000000 0.00000 SCALE2 0.000000 0.012923 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014899 0.00000