HEADER TRANSCRIPTION 30-JAN-14 4COS TITLE CRYSTAL STRUCTURE OF THE PHD-BROMO-PWWP CASSETTE OF HUMAN PRKCBP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN KINASE C-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PHD-BROMO-PWWP DOMAIN, RESIDUES 83-406; COMPND 5 SYNONYM: PRKCBP1, CUTANEOUS T-CELL LYMPHOMA-ASSOCIATED ANTIGEN SE14-3 COMPND 6 CTCL-ASSOCIATED ANTIGEN SE14-3, RACK7, ZINC FINGER MYND DOMAIN- COMPND 7 CONTAINING PROTEIN 8; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION, PHD DOMAIN, BROMO DOMAIN, PWWP DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR T.KROJER,P.SAVITSKY,J.A.NEWMAN,C.D.O.COOPER,F.VON DELFT, AUTHOR 2 C.H.ARROWSMITH,C.BOUNTRA,A.EDWARDS,P.FILIPPAKOPOULOS REVDAT 4 24-JAN-18 4COS 1 AUTHOR REVDAT 3 18-JAN-17 4COS 1 JRNL REVDAT 2 21-DEC-16 4COS 1 JRNL REVDAT 1 05-MAR-14 4COS 0 JRNL AUTH P.SAVITSKY,T.KROJER,T.FUJISAWA,J.P.LAMBERT,S.PICAUD, JRNL AUTH 2 C.Y.WANG,E.K.SHANLE,K.KRAJEWSKI,H.FRIEDRICHSEN,A.KANAPIN, JRNL AUTH 3 C.GODING,M.SCHAPIRA,A.SAMSONOVA,B.D.STRAHL,A.C.GINGRAS, JRNL AUTH 4 P.FILIPPAKOPOULOS JRNL TITL MULTIVALENT HISTONE AND DNA ENGAGEMENT BY A PHD/BRD/PWWP JRNL TITL 2 TRIPLE READER CASSETTE RECRUITS ZMYND8 TO K14AC-RICH JRNL TITL 3 CHROMATIN. JRNL REF CELL REP V. 17 2724 2016 JRNL REFN ESSN 2211-1247 JRNL PMID 27926874 JRNL DOI 10.1016/J.CELREP.2016.11.014 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 36091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1900 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.68 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2603 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.3350 REMARK 3 BIN FREE R VALUE SET COUNT : 158 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2494 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 333 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.82000 REMARK 3 B22 (A**2) : 2.40000 REMARK 3 B33 (A**2) : -1.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.168 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2656 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2455 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3604 ; 1.712 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5667 ; 0.867 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 327 ; 5.989 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;35.000 ;24.417 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 446 ;14.428 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;16.549 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 379 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3000 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 617 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1281 ; 2.192 ; 2.266 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1280 ; 2.119 ; 2.264 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1608 ; 3.188 ; 3.384 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1609 ; 3.187 ; 3.387 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1375 ; 2.936 ; 2.634 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1376 ; 2.935 ; 2.636 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1994 ; 4.556 ; 3.797 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3410 ; 7.273 ;20.431 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3267 ; 7.122 ;19.693 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 86 A 149 REMARK 3 ORIGIN FOR THE GROUP (A): 22.5970 43.1670 4.5970 REMARK 3 T TENSOR REMARK 3 T11: 0.0331 T22: 0.1726 REMARK 3 T33: 0.0614 T12: 0.0195 REMARK 3 T13: 0.0187 T23: 0.0608 REMARK 3 L TENSOR REMARK 3 L11: 1.2376 L22: 0.4517 REMARK 3 L33: 0.0306 L12: -0.7265 REMARK 3 L13: -0.1749 L23: 0.1147 REMARK 3 S TENSOR REMARK 3 S11: 0.1999 S12: 0.2155 S13: 0.1214 REMARK 3 S21: -0.1086 S22: -0.1811 S23: -0.0867 REMARK 3 S31: -0.0244 S32: -0.0582 S33: -0.0188 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 150 A 264 REMARK 3 ORIGIN FOR THE GROUP (A): 29.8060 27.1630 7.6740 REMARK 3 T TENSOR REMARK 3 T11: 0.0101 T22: 0.0822 REMARK 3 T33: 0.0484 T12: -0.0229 REMARK 3 T13: 0.0058 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 0.8837 L22: 0.0799 REMARK 3 L33: 0.8041 L12: 0.0779 REMARK 3 L13: -0.5276 L23: -0.1965 REMARK 3 S TENSOR REMARK 3 S11: -0.0140 S12: -0.0179 S13: 0.0130 REMARK 3 S21: -0.0232 S22: 0.0548 S23: 0.0058 REMARK 3 S31: 0.0315 S32: -0.0240 S33: -0.0408 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 265 A 399 REMARK 3 ORIGIN FOR THE GROUP (A): 60.7990 39.8040 2.8800 REMARK 3 T TENSOR REMARK 3 T11: 0.0159 T22: 0.0706 REMARK 3 T33: 0.0443 T12: 0.0129 REMARK 3 T13: 0.0073 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.5787 L22: 0.3027 REMARK 3 L33: 0.5596 L12: -0.0151 REMARK 3 L13: 0.1342 L23: -0.2315 REMARK 3 S TENSOR REMARK 3 S11: -0.0616 S12: -0.0877 S13: -0.0116 REMARK 3 S21: -0.0501 S22: 0.0132 S23: -0.0346 REMARK 3 S31: 0.0152 S32: -0.1052 S33: 0.0484 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 4COS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1290059645. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97960 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38079 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 49.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.77000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.3 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.47750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.17500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.41750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.17500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.47750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.41750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 81 REMARK 465 MET A 82 REMARK 465 GLN A 83 REMARK 465 ASP A 84 REMARK 465 GLY A 85 REMARK 465 LYS A 393 REMARK 465 ASN A 400 REMARK 465 PHE A 401 REMARK 465 ASP A 402 REMARK 465 MET A 403 REMARK 465 THR A 404 REMARK 465 ALA A 405 REMARK 465 SER A 406 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 104 CG CD OE1 OE2 REMARK 470 LYS A 113 CD CE NZ REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 GLN A 163 CD OE1 NE2 REMARK 470 LYS A 200 CG CD CE NZ REMARK 470 LYS A 204 CE NZ REMARK 470 LYS A 243 CD CE NZ REMARK 470 GLU A 272 CD OE1 OE2 REMARK 470 ARG A 366 CZ NH1 NH2 REMARK 470 LYS A 390 CG CD CE NZ REMARK 470 ASP A 392 CG OD1 OD2 REMARK 470 GLN A 394 CG CD OE1 NE2 REMARK 470 GLU A 395 CD OE1 OE2 REMARK 470 LYS A 398 CE NZ REMARK 470 LEU A 399 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2056 O HOH A 2066 2.10 REMARK 500 O HOH A 2260 O HOH A 2261 2.15 REMARK 500 OD1 ASN A 250 O HOH A 2204 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 88 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 88 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 108 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 166 37.07 -87.00 REMARK 500 CYS A 255 105.27 -167.21 REMARK 500 ASP A 267 111.93 -25.98 REMARK 500 PHE A 360 116.42 -161.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 255 SG REMARK 620 2 CYS A 274 SG 116.0 REMARK 620 3 CYS A 258 SG 112.6 107.0 REMARK 620 4 HIS A 278 NE2 105.8 107.6 107.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 91 SG REMARK 620 2 CYS A 94 SG 109.7 REMARK 620 3 HIS A 111 ND1 97.7 97.0 REMARK 620 4 CYS A 114 SG 115.8 116.8 116.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 103 SG REMARK 620 2 CYS A 130 SG 109.9 REMARK 620 3 CYS A 127 SG 110.7 112.2 REMARK 620 4 CYS A 106 SG 111.2 103.7 109.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO A 1403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO A 1404 DBREF 4COS A 83 406 UNP Q9ULU4 PKCB1_HUMAN 83 406 SEQADV 4COS SER A 81 UNP Q9ULU4 EXPRESSION TAG SEQADV 4COS MET A 82 UNP Q9ULU4 EXPRESSION TAG SEQRES 1 A 326 SER MET GLN ASP GLY ARG ASN ASP PHE TYR CYS TRP VAL SEQRES 2 A 326 CYS HIS ARG GLU GLY GLN VAL LEU CYS CYS GLU LEU CYS SEQRES 3 A 326 PRO ARG VAL TYR HIS ALA LYS CYS LEU ARG LEU THR SER SEQRES 4 A 326 GLU PRO GLU GLY ASP TRP PHE CYS PRO GLU CYS GLU LYS SEQRES 5 A 326 ILE THR VAL ALA GLU CYS ILE GLU THR GLN SER LYS ALA SEQRES 6 A 326 MET THR MET LEU THR ILE GLU GLN LEU SER TYR LEU LEU SEQRES 7 A 326 LYS PHE ALA ILE GLN LYS MET LYS GLN PRO GLY THR ASP SEQRES 8 A 326 ALA PHE GLN LYS PRO VAL PRO LEU GLU GLN HIS PRO ASP SEQRES 9 A 326 TYR ALA GLU TYR ILE PHE HIS PRO MET ASP LEU CYS THR SEQRES 10 A 326 LEU GLU LYS ASN ALA LYS LYS LYS MET TYR GLY CYS THR SEQRES 11 A 326 GLU ALA PHE LEU ALA ASP ALA LYS TRP ILE LEU HIS ASN SEQRES 12 A 326 CYS ILE ILE TYR ASN GLY GLY ASN HIS LYS LEU THR GLN SEQRES 13 A 326 ILE ALA LYS VAL VAL ILE LYS ILE CYS GLU HIS GLU MET SEQRES 14 A 326 ASN GLU ILE GLU VAL CYS PRO GLU CYS TYR LEU ALA ALA SEQRES 15 A 326 CYS GLN LYS ARG ASP ASN TRP PHE CYS GLU PRO CYS SER SEQRES 16 A 326 ASN PRO HIS PRO LEU VAL TRP ALA LYS LEU LYS GLY PHE SEQRES 17 A 326 PRO PHE TRP PRO ALA LYS ALA LEU ARG ASP LYS ASP GLY SEQRES 18 A 326 GLN VAL ASP ALA ARG PHE PHE GLY GLN HIS ASP ARG ALA SEQRES 19 A 326 TRP VAL PRO ILE ASN ASN CYS TYR LEU MET SER LYS GLU SEQRES 20 A 326 ILE PRO PHE SER VAL LYS LYS THR LYS SER ILE PHE ASN SEQRES 21 A 326 SER ALA MET GLN GLU MET GLU VAL TYR VAL GLU ASN ILE SEQRES 22 A 326 ARG ARG LYS PHE GLY VAL PHE ASN TYR SER PRO PHE ARG SEQRES 23 A 326 THR PRO TYR THR PRO ASN SER GLN TYR GLN MET LEU LEU SEQRES 24 A 326 ASP PRO THR ASN PRO SER ALA GLY THR ALA LYS ILE ASP SEQRES 25 A 326 LYS GLN GLU LYS VAL LYS LEU ASN PHE ASP MET THR ALA SEQRES 26 A 326 SER HET ZN A1400 1 HET ZN A1401 1 HET ZN A1402 1 HET DIO A1403 6 HET DIO A1404 6 HETNAM ZN ZINC ION HETNAM DIO 1,4-DIETHYLENE DIOXIDE FORMUL 2 ZN 3(ZN 2+) FORMUL 5 DIO 2(C4 H8 O2) FORMUL 7 HOH *333(H2 O) HELIX 1 1 HIS A 111 ARG A 116 5 6 HELIX 2 2 CYS A 127 CYS A 138 1 12 HELIX 3 3 ILE A 139 GLN A 142 5 4 HELIX 4 4 SER A 143 MET A 148 1 6 HELIX 5 5 THR A 150 LYS A 166 1 17 HELIX 6 6 THR A 170 GLN A 174 5 5 HELIX 7 7 ASP A 184 ILE A 189 1 6 HELIX 8 8 ASP A 194 LYS A 204 1 11 HELIX 9 9 CYS A 209 GLY A 229 1 21 HELIX 10 10 HIS A 232 CYS A 255 1 24 HELIX 11 11 CYS A 255 LYS A 265 1 11 HELIX 12 12 ASN A 268 GLU A 272 5 5 HELIX 13 13 THR A 335 GLY A 358 1 24 HELIX 14 14 GLN A 374 LEU A 378 5 5 HELIX 15 15 ASN A 383 GLY A 387 5 5 SHEET 1 AA 2 LEU A 101 CYS A 102 0 SHEET 2 AA 2 VAL A 109 TYR A 110 -1 O TYR A 110 N LEU A 101 SHEET 1 AB 5 ARG A 313 PRO A 317 0 SHEET 2 AB 5 GLN A 302 PHE A 307 -1 O VAL A 303 N VAL A 316 SHEET 3 AB 5 TRP A 291 LYS A 299 -1 O LYS A 294 N ARG A 306 SHEET 4 AB 5 LEU A 280 ALA A 283 -1 O VAL A 281 N ALA A 293 SHEET 5 AB 5 CYS A 321 LEU A 323 -1 O TYR A 322 N TRP A 282 LINK ZN ZN A1400 SG CYS A 255 1555 1555 2.32 LINK ZN ZN A1400 SG CYS A 274 1555 1555 2.32 LINK ZN ZN A1400 SG CYS A 258 1555 1555 2.32 LINK ZN ZN A1400 NE2 HIS A 278 1555 1555 2.07 LINK ZN ZN A1401 SG CYS A 91 1555 1555 2.32 LINK ZN ZN A1401 SG CYS A 94 1555 1555 2.29 LINK ZN ZN A1401 ND1 HIS A 111 1555 1555 2.10 LINK ZN ZN A1401 SG CYS A 114 1555 1555 2.30 LINK ZN ZN A1402 SG CYS A 103 1555 1555 2.33 LINK ZN ZN A1402 SG CYS A 130 1555 1555 2.34 LINK ZN ZN A1402 SG CYS A 127 1555 1555 2.30 LINK ZN ZN A1402 SG CYS A 106 1555 1555 2.29 SITE 1 AC1 4 CYS A 255 CYS A 258 CYS A 274 HIS A 278 SITE 1 AC2 4 CYS A 91 CYS A 94 HIS A 111 CYS A 114 SITE 1 AC3 4 CYS A 103 CYS A 106 CYS A 127 CYS A 130 SITE 1 AC4 2 LYS A 265 HIS A 311 SITE 1 AC5 6 ALA A 172 PHE A 173 HIS A 182 ASN A 228 SITE 2 AC5 6 HOH A2120 HOH A2137 CRYST1 66.955 68.835 70.350 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014935 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014527 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014215 0.00000