HEADER CELL ADHESION 31-JAN-14 4CP2 TITLE CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 9 A DOMAIN (EPA9A) FROM TITLE 2 CANDIDA GLABRATA IN COMPLEX WITH GALB1-4GLCNAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPITHELIAL ADHESIN 9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ADHESION DOMAIN (A DOMAIN), RESIDUES 39-305; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA GLABRATA; SOURCE 3 ORGANISM_TAXID: 284593; SOURCE 4 STRAIN: CBS 138; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 37762; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: SHUFFLE T7 EXPRESS (C3029); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CELL ADHESION, LECTIN, TISSUE INVASION, PATHOGENICITY EXPDTA X-RAY DIFFRACTION AUTHOR M.KOCK,M.MAESTRE-REYNA,R.DIDERRICH,H.-U.MOESCH,L.-O.ESSEN REVDAT 5 20-DEC-23 4CP2 1 HETSYN REVDAT 4 29-JUL-20 4CP2 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 22-JUL-20 4CP2 1 JRNL REVDAT 2 08-MAY-19 4CP2 1 REMARK LINK REVDAT 1 18-FEB-15 4CP2 0 JRNL AUTH R.DIDERRICH,M.KOCK,M.MAESTRE-REYNA,S.RUPP,L.-O.ESSEN, JRNL AUTH 2 H.-U.MOESCH JRNL TITL FUNCTIONAL REPROGRAMMING OF CANDIDA GLABRATA EPITHELIAL JRNL TITL 2 ADHESINS: THE ROLE OF CONSERVED AND VARIABLE STRUCTURAL JRNL TITL 3 MOTIFS IN LIGAND BINDING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 9180 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 492 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 654 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1818 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 83 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : -0.13000 REMARK 3 B33 (A**2) : 0.43000 REMARK 3 B12 (A**2) : -0.13000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.550 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.294 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.199 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.660 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1918 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1634 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2607 ; 1.312 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3768 ; 0.762 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 217 ; 7.057 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;38.005 ;24.095 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 276 ;15.885 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;14.284 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 249 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2184 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 488 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 874 ; 1.101 ; 2.833 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 873 ; 1.101 ; 2.829 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1089 ; 1.972 ; 4.235 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1043 ; 1.087 ; 2.933 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 8 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 54 REMARK 3 RESIDUE RANGE : A 55 A 96 REMARK 3 RESIDUE RANGE : A 97 A 118 REMARK 3 RESIDUE RANGE : A 119 A 144 REMARK 3 RESIDUE RANGE : A 145 A 198 REMARK 3 RESIDUE RANGE : A 199 A 210 REMARK 3 RESIDUE RANGE : A 211 A 231 REMARK 3 RESIDUE RANGE : A 232 A 278 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0190 51.5950 53.2800 REMARK 3 T TENSOR REMARK 3 T11: 0.1237 T22: 0.0998 REMARK 3 T33: 0.0025 T12: 0.0065 REMARK 3 T13: 0.0078 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.8573 L22: 0.4033 REMARK 3 L33: 0.5721 L12: -0.0085 REMARK 3 L13: 0.5215 L23: -0.3217 REMARK 3 S TENSOR REMARK 3 S11: -0.0127 S12: -0.0139 S13: -0.0205 REMARK 3 S21: 0.0323 S22: 0.0426 S23: 0.0249 REMARK 3 S31: -0.0410 S32: -0.0175 S33: -0.0300 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED. PART OF LOOP L1 NOT DEFINED REMARK 3 IN ELECTRON DENSITY, LYS A 76 - GLY A 107 REMARK 4 REMARK 4 4CP2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1290059648. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : KMC-1 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9889 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.580 REMARK 200 RESOLUTION RANGE LOW (A) : 40.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PRUNED VERSION OF PDB ENTRY 4AF9 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MAGNESIUM CHLORIDE, 0.1M SODIUM REMARK 280 CHLORIDE, 0.1 M MES PH6.5, 12% PEG 4000, 0.05 M LACTOSE, VAPOR REMARK 280 DIFFUSION IN SITTING DROP, SOAKED WITH GALB1-4GLCNAC, VAPOR REMARK 280 DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.65000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.30000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 77.30000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.65000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2022 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 16 REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 465 HIS A 22 REMARK 465 HIS A 23 REMARK 465 HIS A 24 REMARK 465 HIS A 25 REMARK 465 SER A 26 REMARK 465 SER A 27 REMARK 465 GLY A 28 REMARK 465 LEU A 29 REMARK 465 VAL A 30 REMARK 465 PRO A 31 REMARK 465 ARG A 32 REMARK 465 GLY A 33 REMARK 465 SER A 34 REMARK 465 HIS A 35 REMARK 465 MET A 36 REMARK 465 ALA A 37 REMARK 465 SER A 38 REMARK 465 ASP A 39 REMARK 465 ILE A 40 REMARK 465 THR A 41 REMARK 465 PRO A 42 REMARK 465 PHE A 43 REMARK 465 ALA A 44 REMARK 465 ASN A 77 REMARK 465 PRO A 78 REMARK 465 ARG A 79 REMARK 465 THR A 80 REMARK 465 GLY A 81 REMARK 465 PHE A 82 REMARK 465 THR A 83 REMARK 465 ASN A 84 REMARK 465 ASP A 85 REMARK 465 THR A 86 REMARK 465 ASP A 87 REMARK 465 SER A 88 REMARK 465 ASP A 89 REMARK 465 ALA A 90 REMARK 465 ASP A 91 REMARK 465 GLY A 92 REMARK 465 GLU A 93 REMARK 465 THR A 94 REMARK 465 ASP A 95 REMARK 465 GLY A 96 REMARK 465 ASP A 97 REMARK 465 SER A 98 REMARK 465 ALA A 99 REMARK 465 GLY A 100 REMARK 465 GLY A 101 REMARK 465 ILE A 102 REMARK 465 GLU A 103 REMARK 465 GLY A 104 REMARK 465 ARG A 105 REMARK 465 ALA A 106 REMARK 465 LYS A 294 REMARK 465 ASP A 295 REMARK 465 SER A 296 REMARK 465 ILE A 297 REMARK 465 ARG A 298 REMARK 465 TYR A 299 REMARK 465 LYS A 300 REMARK 465 THR A 301 REMARK 465 VAL A 302 REMARK 465 CYS A 303 REMARK 465 ASP A 304 REMARK 465 ASP A 305 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 114 -14.71 -48.33 REMARK 500 TYR A 122 -15.81 -156.20 REMARK 500 PRO A 159 159.61 -49.65 REMARK 500 ASN A 207 -44.80 -136.42 REMARK 500 ASN A 213 45.66 -147.74 REMARK 500 ASP A 258 138.91 -178.42 REMARK 500 TYR A 259 -128.05 60.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1295 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 196 OD1 REMARK 620 2 ASP A 197 OD1 81.3 REMARK 620 3 ASN A 256 OD1 109.5 67.7 REMARK 620 4 ASP A 258 O 169.0 109.7 76.4 REMARK 620 5 HIS A 260 O 81.8 135.1 79.5 90.4 REMARK 620 6 GAL B 2 O3 99.6 73.8 126.5 83.3 150.2 REMARK 620 7 GAL B 2 O4 76.1 127.4 164.8 95.9 87.6 64.3 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4COU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 6 A DOMAIN ( EPA6A) FROM REMARK 900 CANDIDA GLABRATA IN COMPLEX WITH LACTOSE REMARK 900 RELATED ID: 4COV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 6 A DOMAIN ( EPA6A) FROM REMARK 900 CANDIDA GLABRATA IN COMPLEX WITH GALA1- 3GAL REMARK 900 RELATED ID: 4COW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 6 A DOMAIN ( EPA6A) FROM REMARK 900 CANDIDA GLABRATA IN COMPLEX WITH THE T- ANTIGEN (GALB1-3GALNAC) REMARK 900 RELATED ID: 4COY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 6 A DOMAIN ( EPA6A) FROM REMARK 900 CANDIDA GLABRATA IN COMPLEX WITH GALB1- 4GLCNAC REMARK 900 RELATED ID: 4COZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 6 A DOMAIN ( EPA6A) FROM REMARK 900 CANDIDA GLABRATA IN COMPLEX WITH GALB1- 3GLCNAC REMARK 900 RELATED ID: 4CP0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 9 A DOMAIN ( EPA9A) FROM REMARK 900 CANDIDA GLABRATA IN COMPLEX WITH LACTOSE REMARK 900 RELATED ID: 4CP1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 9 A DOMAIN ( EPA9A) FROM REMARK 900 CANDIDA GLABRATA IN COMPLEX WITH GALB1- 3GLCNAC DBREF 4CP2 A 39 305 UNP B4UMX2 B4UMX2_CANGA 39 305 SEQADV 4CP2 MET A 16 UNP B4UMX2 EXPRESSION TAG SEQADV 4CP2 GLY A 17 UNP B4UMX2 EXPRESSION TAG SEQADV 4CP2 SER A 18 UNP B4UMX2 EXPRESSION TAG SEQADV 4CP2 SER A 19 UNP B4UMX2 EXPRESSION TAG SEQADV 4CP2 HIS A 20 UNP B4UMX2 EXPRESSION TAG SEQADV 4CP2 HIS A 21 UNP B4UMX2 EXPRESSION TAG SEQADV 4CP2 HIS A 22 UNP B4UMX2 EXPRESSION TAG SEQADV 4CP2 HIS A 23 UNP B4UMX2 EXPRESSION TAG SEQADV 4CP2 HIS A 24 UNP B4UMX2 EXPRESSION TAG SEQADV 4CP2 HIS A 25 UNP B4UMX2 EXPRESSION TAG SEQADV 4CP2 SER A 26 UNP B4UMX2 EXPRESSION TAG SEQADV 4CP2 SER A 27 UNP B4UMX2 EXPRESSION TAG SEQADV 4CP2 GLY A 28 UNP B4UMX2 EXPRESSION TAG SEQADV 4CP2 LEU A 29 UNP B4UMX2 EXPRESSION TAG SEQADV 4CP2 VAL A 30 UNP B4UMX2 EXPRESSION TAG SEQADV 4CP2 PRO A 31 UNP B4UMX2 EXPRESSION TAG SEQADV 4CP2 ARG A 32 UNP B4UMX2 EXPRESSION TAG SEQADV 4CP2 GLY A 33 UNP B4UMX2 EXPRESSION TAG SEQADV 4CP2 SER A 34 UNP B4UMX2 EXPRESSION TAG SEQADV 4CP2 HIS A 35 UNP B4UMX2 EXPRESSION TAG SEQADV 4CP2 MET A 36 UNP B4UMX2 EXPRESSION TAG SEQADV 4CP2 ALA A 37 UNP B4UMX2 EXPRESSION TAG SEQADV 4CP2 SER A 38 UNP B4UMX2 EXPRESSION TAG SEQRES 1 A 290 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 290 LEU VAL PRO ARG GLY SER HIS MET ALA SER ASP ILE THR SEQRES 3 A 290 PRO PHE ALA HIS TYR PRO ARG PRO GLU GLY CYS SER SER SEQRES 4 A 290 PRO PRO ASN ALA VAL SER VAL GLY LEU HIS MET ASP LEU SEQRES 5 A 290 TYR ASN TYR PRO TYR LEU TYR VAL LYS ASN PRO ARG THR SEQRES 6 A 290 GLY PHE THR ASN ASP THR ASP SER ASP ALA ASP GLY GLU SEQRES 7 A 290 THR ASP GLY ASP SER ALA GLY GLY ILE GLU GLY ARG ALA SEQRES 8 A 290 GLY GLN CYS TRP ASN PRO GLU TYR GLN ASP PRO ASN PHE SEQRES 9 A 290 PRO ARG TYR GLY TYR LYS LYS TYR GLY SER PHE GLY SER SEQRES 10 A 290 SER ASP HIS VAL ASN GLY LYS ILE SER TRP ASP HIS ASN SEQRES 11 A 290 GLU PHE LYS GLU GLY CYS LYS PRO ILE MET ALA ARG LEU SEQRES 12 A 290 PRO THR ALA TYR ASN TYR PRO ALA LYS ILE THR PHE SER SEQRES 13 A 290 ASN PHE THR MET VAL LEU SER GLY TYR PHE LYS PRO LYS SEQRES 14 A 290 SER THR GLY LEU TYR LYS PHE GLU ILE HIS ALA ASP ASP SEQRES 15 A 290 PHE ILE LEU PHE ASN PHE GLY SER LYS ASN ALA PHE GLU SEQRES 16 A 290 CYS CYS ASN ARG GLU GLU SER ILE ASP ASN PHE GLY PRO SEQRES 17 A 290 TYR VAL ALA TYR ALA MET TRP PRO ASN GLU ALA ASP GLN SEQRES 18 A 290 GLU LEU GLU VAL TYR LEU PHE GLU ASP SER TYR TYR PRO SEQRES 19 A 290 ILE ARG LEU PHE TYR ASN ASN ARG ASP TYR HIS SER LYS SEQRES 20 A 290 PHE MET VAL GLY PHE TYR PRO PRO ASN THR GLU GLU ILE SEQRES 21 A 290 THR TYR ASP PHE ASP GLY TYR LEU TYR MET LEU ASP ASP SEQRES 22 A 290 THR GLY ASN GLU CYS LYS ASP SER ILE ARG TYR LYS THR SEQRES 23 A 290 VAL CYS ASP ASP HET NAG B 1 15 HET GAL B 2 11 HET CA A1295 1 HET CL A1298 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 2 NAG C8 H15 N O6 FORMUL 2 GAL C6 H12 O6 FORMUL 3 CA CA 2+ FORMUL 4 CL CL 1- FORMUL 5 HOH *83(H2 O) HELIX 1 1 PRO A 55 ASN A 57 5 3 HELIX 2 2 PRO A 112 ASP A 116 5 5 HELIX 3 3 TYR A 122 LYS A 126 5 5 HELIX 4 4 PRO A 159 ASN A 163 5 5 HELIX 5 5 ASN A 213 ILE A 218 1 6 SHEET 1 AA 6 VAL A 59 VAL A 61 0 SHEET 2 AA 6 LEU A 283 LEU A 286 -1 O MET A 285 N SER A 60 SHEET 3 AA 6 PHE A 173 PHE A 181 1 O TYR A 180 N TYR A 284 SHEET 4 AA 6 TYR A 248 ASN A 256 -1 O TYR A 248 N PHE A 181 SHEET 5 AA 6 PHE A 198 PHE A 203 -1 O PHE A 198 N ASN A 255 SHEET 6 AA 6 ALA A 226 MET A 229 -1 O ALA A 226 N PHE A 201 SHEET 1 AB 5 VAL A 59 VAL A 61 0 SHEET 2 AB 5 LEU A 283 LEU A 286 -1 O MET A 285 N SER A 60 SHEET 3 AB 5 PHE A 173 PHE A 181 1 O TYR A 180 N TYR A 284 SHEET 4 AB 5 LEU A 63 ASN A 69 -1 O HIS A 64 N SER A 178 SHEET 5 AB 5 SER A 129 VAL A 136 -1 N PHE A 130 O LEU A 67 SHEET 1 AC 4 TRP A 142 HIS A 144 0 SHEET 2 AC 4 SER A 261 TYR A 268 -1 O SER A 261 N HIS A 144 SHEET 3 AC 4 GLY A 187 ASP A 196 -1 O LYS A 190 N TYR A 268 SHEET 4 AC 4 ASP A 235 LEU A 242 -1 O GLN A 236 N ILE A 193 SHEET 1 AD 2 MET A 155 ALA A 156 0 SHEET 2 AD 2 ILE A 168 THR A 169 -1 O ILE A 168 N ALA A 156 SSBOND 1 CYS A 52 CYS A 211 1555 1555 2.03 SSBOND 2 CYS A 109 CYS A 151 1555 1555 2.03 SSBOND 3 CYS A 212 CYS A 293 1555 1555 2.02 LINK O4 NAG B 1 C1 GAL B 2 1555 1555 1.44 LINK OD1 ASP A 196 CA CA A1295 1555 1555 2.32 LINK OD1 ASP A 197 CA CA A1295 1555 1555 2.39 LINK OD1 ASN A 256 CA CA A1295 1555 1555 2.30 LINK O ASP A 258 CA CA A1295 1555 1555 2.35 LINK O HIS A 260 CA CA A1295 1555 1555 2.27 LINK CA CA A1295 O3 GAL B 2 1555 1555 2.33 LINK CA CA A1295 O4 GAL B 2 1555 1555 2.34 CISPEP 1 ASP A 196 ASP A 197 0 8.31 CISPEP 2 TRP A 230 PRO A 231 0 -2.20 CRYST1 66.840 66.840 115.950 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014961 0.008638 0.000000 0.00000 SCALE2 0.000000 0.017276 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008624 0.00000