HEADER SUGAR BINDING PROTEIN 04-FEB-14 4CP9 TITLE CRYSTAL STRUCTURE OF LECA LECTIN COMPLEXED WITH A DIVALENT GALACTOSIDE TITLE 2 AT 1.65 ANGSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PA-I GALACTOPHILIC LECTIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PA-IL, GALACTOSE-BINDING LECTIN, LECA; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: OXIDATED CYS57; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PA-I GALACTOPHILIC LECTIN; COMPND 9 CHAIN: B, C, D; COMPND 10 SYNONYM: PA-IL, GALACTOSE-BINDING LECTIN, LECA; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: OXIDATED CYS57 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET25B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 12 ORGANISM_TAXID: 208964; SOURCE 13 STRAIN: PAO1; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PET25B KEYWDS SUGAR BINDING PROTEIN, GALACTOSE BINDING, SUGAR BASED INHIBITOR EXPDTA X-RAY DIFFRACTION MDLTYP CA ATOMS ONLY, CHAIN A, B, C, D AUTHOR J.TOPIN,A.VARROT,A.IMBERTY,N.WISSINGER REVDAT 5 20-DEC-23 4CP9 1 HETSYN REVDAT 4 29-JUL-20 4CP9 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 28-DEC-16 4CP9 1 TITLE REVDAT 2 22-APR-15 4CP9 1 FORMUL SHEET LINK CONECT REVDAT 2 2 1 MASTER REVDAT 1 08-OCT-14 4CP9 0 JRNL AUTH A.NOVOA,T.EIERHOFF,J.TOPIN,A.VARROT,S.BARLUENGA,A.IMBERTY, JRNL AUTH 2 W.ROMER,N.WINSSINGER JRNL TITL A LECA LIGAND IDENTIFIED FROM A GALACTOSIDE-CONJUGATE ARRAY JRNL TITL 2 INHIBITS HOST CELL INVASION BY PSEUDOMONAS AERUGINOSA. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 53 8885 2014 JRNL REFN ISSN 1433-7851 JRNL PMID 25044671 JRNL DOI 10.1002/ANIE.201402831 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 62390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3334 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4541 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 251 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3614 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 194 REMARK 3 SOLVENT ATOMS : 418 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.75000 REMARK 3 B22 (A**2) : 2.17000 REMARK 3 B33 (A**2) : -1.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.380 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3973 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3602 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5416 ; 1.725 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8275 ; 0.783 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 498 ; 6.041 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;35.637 ;25.915 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 530 ;10.707 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ; 5.514 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 580 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4639 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 919 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1061 ; 0.241 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3359 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1940 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1805 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 132 ; 0.106 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 18 ; 0.154 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.280 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 42 ; 0.178 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.133 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1977 ; 1.201 ; 1.593 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1976 ; 1.200 ; 1.593 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2480 ; 1.809 ; 2.381 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1996 ; 2.170 ; 2.038 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): 38.7840 40.1620 16.4260 REMARK 3 T TENSOR REMARK 3 T11: 0.0198 T22: 0.1250 REMARK 3 T33: 0.0121 T12: 0.0187 REMARK 3 T13: 0.0006 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.6458 L22: 0.2060 REMARK 3 L33: 3.1952 L12: -0.1001 REMARK 3 L13: 0.3144 L23: 0.5279 REMARK 3 S TENSOR REMARK 3 S11: -0.0140 S12: 0.0342 S13: -0.0363 REMARK 3 S21: 0.0234 S22: 0.0566 S23: -0.0192 REMARK 3 S31: 0.0274 S32: 0.2034 S33: -0.0426 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 121 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3340 46.1520 16.3340 REMARK 3 T TENSOR REMARK 3 T11: 0.0133 T22: 0.1402 REMARK 3 T33: 0.0392 T12: 0.0108 REMARK 3 T13: -0.0024 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.8687 L22: 0.9864 REMARK 3 L33: 2.3633 L12: -0.4430 REMARK 3 L13: -0.2435 L23: 1.2990 REMARK 3 S TENSOR REMARK 3 S11: -0.0552 S12: -0.0249 S13: -0.0944 REMARK 3 S21: 0.0548 S22: -0.0807 S23: 0.0433 REMARK 3 S31: 0.0163 S32: -0.1830 S33: 0.1359 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 121 REMARK 3 ORIGIN FOR THE GROUP (A): 13.1820 30.3830 -20.7040 REMARK 3 T TENSOR REMARK 3 T11: 0.0303 T22: 0.1862 REMARK 3 T33: 0.0443 T12: -0.0244 REMARK 3 T13: 0.0032 T23: -0.0870 REMARK 3 L TENSOR REMARK 3 L11: 1.9528 L22: 1.1052 REMARK 3 L33: 2.1298 L12: -0.4910 REMARK 3 L13: -0.4643 L23: 1.5235 REMARK 3 S TENSOR REMARK 3 S11: 0.0145 S12: 0.3447 S13: -0.1806 REMARK 3 S21: -0.0176 S22: -0.1736 S23: 0.1263 REMARK 3 S31: -0.0342 S32: -0.2001 S33: 0.1591 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 121 REMARK 3 ORIGIN FOR THE GROUP (A): 35.3080 26.9920 -21.6580 REMARK 3 T TENSOR REMARK 3 T11: 0.0852 T22: 0.1269 REMARK 3 T33: 0.0134 T12: 0.0079 REMARK 3 T13: 0.0191 T23: -0.0316 REMARK 3 L TENSOR REMARK 3 L11: 0.6053 L22: 0.1606 REMARK 3 L33: 3.1788 L12: -0.1189 REMARK 3 L13: 0.0304 L23: 0.6459 REMARK 3 S TENSOR REMARK 3 S11: -0.0364 S12: 0.0404 S13: -0.0093 REMARK 3 S21: 0.0581 S22: 0.0090 S23: 0.0135 REMARK 3 S31: 0.2490 S32: 0.1910 S33: 0.0274 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED. DISORDERED REGIONS WERE REMARK 3 MODELED STEREOCHEMICALLY REMARK 4 REMARK 4 4CP9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1290059663. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESERACH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65807 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 48.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1OKO REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SOLUTION 20 OF THE CSSI SCREEN 8% PEG REMARK 280 20K, 8% PEG550MME, 100 MM TRIS 8.5 AND 0.2 M LI2SO4, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.43800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.71350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.12950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.71350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.43800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.12950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 OCS B 57 OD3 REMARK 470 OCS C 57 OD3 REMARK 470 OCS D 57 OD3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 78 -133.56 55.95 REMARK 500 ASN B 78 -133.17 56.84 REMARK 500 ASN B 89 -43.51 99.32 REMARK 500 ASN C 78 -133.78 58.99 REMARK 500 ASN D 71 36.23 -97.23 REMARK 500 ASN D 78 -132.80 61.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CN8 A 1124 REMARK 610 1PE A 1125 REMARK 610 CN8 B 1125 REMARK 610 1PE B 1126 REMARK 610 CN8 C 1125 REMARK 610 1PE C 1126 REMARK 610 1PE D 1127 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1122 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 36 O REMARK 620 2 ASP A 100 OD2 103.2 REMARK 620 3 THR A 104 O 160.3 91.8 REMARK 620 4 ASN A 107 OD1 84.5 149.8 76.2 REMARK 620 5 ASN A 108 OD1 79.5 76.3 92.0 76.5 REMARK 620 6 GAL A1123 O3 92.5 134.9 85.6 72.7 148.8 REMARK 620 7 GAL A1123 O4 74.8 75.3 122.1 134.6 135.7 68.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1123 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 36 O REMARK 620 2 ASP B 100 OD2 104.1 REMARK 620 3 THR B 104 O 161.7 91.7 REMARK 620 4 ASN B 107 OD1 83.6 152.6 78.2 REMARK 620 5 ASN B 108 OD1 80.9 76.0 94.2 79.4 REMARK 620 6 GAL B1124 O3 91.4 133.6 84.2 71.3 150.3 REMARK 620 7 GAL B1124 O4 76.4 75.0 117.5 132.3 137.1 66.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C1123 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR C 36 O REMARK 620 2 ASP C 100 OD2 105.1 REMARK 620 3 THR C 104 O 156.7 89.7 REMARK 620 4 ASN C 107 OD1 85.3 149.4 73.2 REMARK 620 5 ASN C 108 OD1 72.6 75.5 94.4 80.6 REMARK 620 6 GAL C1124 O3 94.6 140.0 84.8 65.0 144.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D1123 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR D 36 O REMARK 620 2 ASP D 100 OD2 104.5 REMARK 620 3 THR D 104 O 161.1 89.3 REMARK 620 4 ASN D 107 OD1 85.2 148.1 76.4 REMARK 620 5 ASN D 108 OD1 76.9 75.8 94.5 77.1 REMARK 620 6 GAL D1124 O4 79.6 76.2 116.8 135.7 137.2 REMARK 620 7 GAL D1124 O3 92.0 135.4 86.8 72.9 148.8 66.4 REMARK 620 N 1 2 3 4 5 6 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CPB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LECA IN COMPLEX WITH A DIVALENT GALACTOSIDE AT REMARK 900 1.57 ANGSTROM IN MAGNESIUM REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINAL METHIONINE CLEAVED DBREF 4CP9 A 1 121 UNP Q05097 PA1L_PSEAE 2 122 DBREF 4CP9 B 1 121 UNP Q05097 PA1L_PSEAE 2 122 DBREF 4CP9 C 1 121 UNP Q05097 PA1L_PSEAE 2 122 DBREF 4CP9 D 1 121 UNP Q05097 PA1L_PSEAE 2 122 SEQRES 1 A 121 ALA TRP LYS GLY GLU VAL LEU ALA ASN ASN GLU ALA GLY SEQRES 2 A 121 GLN VAL THR SER ILE ILE TYR ASN PRO GLY ASP VAL ILE SEQRES 3 A 121 THR ILE VAL ALA ALA GLY TRO ALA SER TYR GLY PRO THR SEQRES 4 A 121 GLN LYS TRP GLY PRO GLN GLY ASP ARG GLU HIS PRO ASP SEQRES 5 A 121 GLN GLY LEU ILE OCS HIS ASP ALA PHE CYS GLY ALA LEU SEQRES 6 A 121 VAL MET LYS ILE GLY ASN SER GLY THR ILE PRO VAL ASN SEQRES 7 A 121 THR GLY LEU PHE ARG TRP VAL ALA PRO ASN ASN VAL GLN SEQRES 8 A 121 GLY ALA ILE THR LEU ILE TYR ASN ASP VAL PRO GLY THR SEQRES 9 A 121 TYR GLY ASN ASN SER GLY SER PHE SER VAL ASN ILE GLY SEQRES 10 A 121 LYS ASP GLN SER SEQRES 1 B 121 ALA TRP LYS GLY GLU VAL LEU ALA ASN ASN GLU ALA GLY SEQRES 2 B 121 GLN VAL THR SER ILE ILE TYR ASN PRO GLY ASP VAL ILE SEQRES 3 B 121 THR ILE VAL ALA ALA GLY TRP ALA SER TYR GLY PRO THR SEQRES 4 B 121 GLN LYS TRP GLY PRO GLN GLY ASP ARG GLU HIS PRO ASP SEQRES 5 B 121 GLN GLY LEU ILE OCS HIS ASP ALA PHE CYS GLY ALA LEU SEQRES 6 B 121 VAL MET LYS ILE GLY ASN SER GLY THR ILE PRO VAL ASN SEQRES 7 B 121 THR GLY LEU PHE ARG TRP VAL ALA PRO ASN ASN VAL GLN SEQRES 8 B 121 GLY ALA ILE THR LEU ILE TYR ASN ASP VAL PRO GLY THR SEQRES 9 B 121 TYR GLY ASN ASN SER GLY SER PHE SER VAL ASN ILE GLY SEQRES 10 B 121 LYS ASP GLN SER SEQRES 1 C 121 ALA TRP LYS GLY GLU VAL LEU ALA ASN ASN GLU ALA GLY SEQRES 2 C 121 GLN VAL THR SER ILE ILE TYR ASN PRO GLY ASP VAL ILE SEQRES 3 C 121 THR ILE VAL ALA ALA GLY TRP ALA SER TYR GLY PRO THR SEQRES 4 C 121 GLN LYS TRP GLY PRO GLN GLY ASP ARG GLU HIS PRO ASP SEQRES 5 C 121 GLN GLY LEU ILE OCS HIS ASP ALA PHE CYS GLY ALA LEU SEQRES 6 C 121 VAL MET LYS ILE GLY ASN SER GLY THR ILE PRO VAL ASN SEQRES 7 C 121 THR GLY LEU PHE ARG TRP VAL ALA PRO ASN ASN VAL GLN SEQRES 8 C 121 GLY ALA ILE THR LEU ILE TYR ASN ASP VAL PRO GLY THR SEQRES 9 C 121 TYR GLY ASN ASN SER GLY SER PHE SER VAL ASN ILE GLY SEQRES 10 C 121 LYS ASP GLN SER SEQRES 1 D 121 ALA TRP LYS GLY GLU VAL LEU ALA ASN ASN GLU ALA GLY SEQRES 2 D 121 GLN VAL THR SER ILE ILE TYR ASN PRO GLY ASP VAL ILE SEQRES 3 D 121 THR ILE VAL ALA ALA GLY TRP ALA SER TYR GLY PRO THR SEQRES 4 D 121 GLN LYS TRP GLY PRO GLN GLY ASP ARG GLU HIS PRO ASP SEQRES 5 D 121 GLN GLY LEU ILE OCS HIS ASP ALA PHE CYS GLY ALA LEU SEQRES 6 D 121 VAL MET LYS ILE GLY ASN SER GLY THR ILE PRO VAL ASN SEQRES 7 D 121 THR GLY LEU PHE ARG TRP VAL ALA PRO ASN ASN VAL GLN SEQRES 8 D 121 GLY ALA ILE THR LEU ILE TYR ASN ASP VAL PRO GLY THR SEQRES 9 D 121 TYR GLY ASN ASN SER GLY SER PHE SER VAL ASN ILE GLY SEQRES 10 D 121 LYS ASP GLN SER MODRES 4CP9 TRO A 33 TRP 2-HYDROXY-TRYPTOPHAN MODRES 4CP9 OCS A 57 CYS CYSTEINESULFONIC ACID MODRES 4CP9 OCS B 57 CYS CYSTEINESULFONIC ACID MODRES 4CP9 OCS C 57 CYS CYSTEINESULFONIC ACID MODRES 4CP9 OCS D 57 CYS CYSTEINESULFONIC ACID HET TRO A 33 15 HET OCS A 57 9 HET OCS B 57 8 HET OCS C 57 8 HET OCS D 57 8 HET CA A1122 1 HET GAL A1123 11 HET CN8 A1124 18 HET 1PE A1125 10 HET SO4 A1126 5 HET CA B1123 1 HET GAL B1124 11 HET CN8 B1125 18 HET 1PE B1126 15 HET EDO B1127 4 HET EDO B1128 4 HET CA C1123 1 HET GAL C1124 11 HET CN8 C1125 10 HET 1PE C1126 10 HET CA D1123 1 HET GAL D1124 11 HET CN8 D1125 34 HET SO4 D1126 5 HET 1PE D1127 13 HETNAM TRO 2-HYDROXY-TRYPTOPHAN HETNAM OCS CYSTEINESULFONIC ACID HETNAM CA CALCIUM ION HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM CN8 (4S)-N-ETHYL-4-{[N-METHYL-3-(1-{2-[(4-SULFANYLBENZOYL) HETNAM 2 CN8 AMINO]ETHYL}-1H-1,2,3-TRIAZOL-4-YL)-L-ALANYL]AMINO}-L- HETNAM 3 CN8 PROLINAMIDE HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN 1PE PEG400 HETSYN EDO ETHYLENE GLYCOL FORMUL 1 TRO C11 H12 N2 O3 FORMUL 1 OCS 4(C3 H7 N O5 S) FORMUL 5 CA 4(CA 2+) FORMUL 6 GAL 4(C6 H12 O6) FORMUL 7 CN8 4(C22 H32 N8 O3 S) FORMUL 8 1PE 4(C10 H22 O6) FORMUL 9 SO4 2(O4 S 2-) FORMUL 14 EDO 2(C2 H6 O2) FORMUL 25 HOH *418(H2 O) HELIX 1 2 THR A 104 ASN A 108 5 5 HELIX 2 3 THR B 104 ASN B 108 5 5 HELIX 3 4 THR C 104 ASN C 108 5 5 HELIX 4 5 THR D 104 ASN D 108 5 5 SHEET 1 AA 4 TRP A 2 LEU A 7 0 SHEET 2 AA 4 SER A 109 LYS A 118 -1 O PHE A 112 N VAL A 6 SHEET 3 AA 4 ILE A 26 SER A 35 -1 O THR A 27 N GLY A 117 SHEET 4 AA 4 GLY A 80 TRP A 84 -1 O LEU A 81 N ILE A 28 SHEET 1 AB 4 GLN A 14 TYR A 20 0 SHEET 2 AB 4 GLY A 92 TYR A 98 -1 O GLY A 92 N TYR A 20 SHEET 3 AB 4 LEU A 65 ILE A 69 -1 O VAL A 66 N ILE A 97 SHEET 4 AB 4 ILE A 75 PRO A 76 -1 O ILE A 75 N MET A 67 SHEET 1 BA 4 TRP B 2 LEU B 7 0 SHEET 2 BA 4 SER B 109 LYS B 118 -1 O PHE B 112 N VAL B 6 SHEET 3 BA 4 ILE B 26 SER B 35 -1 O THR B 27 N GLY B 117 SHEET 4 BA 4 GLY B 80 TRP B 84 -1 O LEU B 81 N ILE B 28 SHEET 1 BB 4 GLN B 14 TYR B 20 0 SHEET 2 BB 4 GLY B 92 TYR B 98 -1 O GLY B 92 N TYR B 20 SHEET 3 BB 4 LEU B 65 ILE B 69 -1 O VAL B 66 N ILE B 97 SHEET 4 BB 4 ILE B 75 PRO B 76 -1 O ILE B 75 N MET B 67 SHEET 1 BC 4 TRP C 2 LEU C 7 0 SHEET 2 BC 4 SER C 109 LYS C 118 -1 O PHE C 112 N VAL C 6 SHEET 3 BC 4 ILE C 26 SER C 35 -1 O THR C 27 N GLY C 117 SHEET 4 BC 4 GLY C 80 TRP C 84 -1 O LEU C 81 N ILE C 28 SHEET 1 CA 4 GLN C 14 TYR C 20 0 SHEET 2 CA 4 GLY C 92 TYR C 98 -1 O GLY C 92 N TYR C 20 SHEET 3 CA 4 LEU C 65 ILE C 69 -1 O VAL C 66 N ILE C 97 SHEET 4 CA 4 ILE C 75 PRO C 76 -1 O ILE C 75 N MET C 67 SHEET 1 DA 4 TRP D 2 LEU D 7 0 SHEET 2 DA 4 SER D 109 LYS D 118 -1 O PHE D 112 N VAL D 6 SHEET 3 DA 4 ILE D 26 SER D 35 -1 O THR D 27 N GLY D 117 SHEET 4 DA 4 GLY D 80 TRP D 84 -1 O LEU D 81 N ILE D 28 SHEET 1 DB 4 GLN D 14 TYR D 20 0 SHEET 2 DB 4 GLY D 92 TYR D 98 -1 O GLY D 92 N TYR D 20 SHEET 3 DB 4 CYS D 62 ILE D 69 -1 O VAL D 66 N ILE D 97 SHEET 4 DB 4 ILE D 75 PRO D 76 1 O ILE D 75 N MET D 67 SHEET 1 DC 4 GLN D 14 TYR D 20 0 SHEET 2 DC 4 GLY D 92 TYR D 98 -1 O GLY D 92 N TYR D 20 SHEET 3 DC 4 CYS D 62 ILE D 69 -1 O VAL D 66 N ILE D 97 SHEET 4 DC 4 GLN D 45 ASP D 47 -1 N ASP D 47 O CYS D 62 SHEET 1 DD 2 ILE D 75 PRO D 76 0 SHEET 2 DD 2 CYS D 62 ILE D 69 1 O MET D 67 N ILE D 75 LINK C GLY A 32 N TRO A 33 1555 1555 1.35 LINK C TRO A 33 N ALA A 34 1555 1555 1.32 LINK C ILE A 56 N OCS A 57 1555 1555 1.35 LINK C OCS A 57 N HIS A 58 1555 1555 1.34 LINK C1 GAL A1123 S1 CN8 A1124 1555 1555 1.83 LINK C ILE B 56 N OCS B 57 1555 1555 1.35 LINK C OCS B 57 N HIS B 58 1555 1555 1.33 LINK C1 GAL B1124 S1 CN8 B1125 1555 1555 1.78 LINK C ILE C 56 N OCS C 57 1555 1555 1.34 LINK C OCS C 57 N HIS C 58 1555 1555 1.33 LINK C1 GAL C1124 S1 CN8 C1125 1555 1555 1.83 LINK C ILE D 56 N OCS D 57 1555 1555 1.33 LINK C OCS D 57 N HIS D 58 1555 1555 1.34 LINK C1 GAL D1124 S1 CN8 D1125 1555 1555 1.80 LINK O TYR A 36 CA CA A1122 1555 1555 2.41 LINK OD2 ASP A 100 CA CA A1122 1555 1555 2.35 LINK O THR A 104 CA CA A1122 1555 1555 2.32 LINK OD1 ASN A 107 CA CA A1122 1555 1555 2.49 LINK OD1 ASN A 108 CA CA A1122 1555 1555 2.37 LINK CA CA A1122 O3 GAL A1123 1555 1555 2.38 LINK CA CA A1122 O4 GAL A1123 1555 1555 2.48 LINK O TYR B 36 CA CA B1123 1555 1555 2.35 LINK OD2 ASP B 100 CA CA B1123 1555 1555 2.49 LINK O THR B 104 CA CA B1123 1555 1555 2.35 LINK OD1 ASN B 107 CA CA B1123 1555 1555 2.46 LINK OD1 ASN B 108 CA CA B1123 1555 1555 2.36 LINK CA CA B1123 O3 GAL B1124 1555 1555 2.47 LINK CA CA B1123 O4 GAL B1124 1555 1555 2.50 LINK O TYR C 36 CA CA C1123 1555 1555 2.32 LINK OD2 ASP C 100 CA CA C1123 1555 1555 2.38 LINK O THR C 104 CA CA C1123 1555 1555 2.32 LINK OD1 ASN C 107 CA CA C1123 1555 1555 2.60 LINK OD1 ASN C 108 CA CA C1123 1555 1555 2.50 LINK CA CA C1123 O3 GAL C1124 1555 1555 2.40 LINK O TYR D 36 CA CA D1123 1555 1555 2.37 LINK OD2 ASP D 100 CA CA D1123 1555 1555 2.36 LINK O THR D 104 CA CA D1123 1555 1555 2.23 LINK OD1 ASN D 107 CA CA D1123 1555 1555 2.52 LINK OD1 ASN D 108 CA CA D1123 1555 1555 2.42 LINK CA CA D1123 O4 GAL D1124 1555 1555 2.51 LINK CA CA D1123 O3 GAL D1124 1555 1555 2.41 CRYST1 50.876 66.259 159.427 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019656 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015092 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006272 0.00000