HEADER BIOTIN-BINDING PROTEIN 06-FEB-14 4CPF TITLE WILD-TYPE STREPTAVIDIN IN COMPLEX WITH LOVE-HATE LIGAND 3 (LH3) COMPND MOL_ID: 1; COMPND 2 MOLECULE: STREPTAVIDIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 37-163; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: WILD-TYPE CORE STREPTAVIDIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES AVIDINII; SOURCE 3 ORGANISM_TAXID: 1895; SOURCE 4 ATCC: 27419; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS BIOTIN-BINDING PROTEIN, AVIDIN, BIOTIN, BIOTINYLATED, STERIC CLASH, KEYWDS 2 STRAINED, HINDERED, FORCE, LIGAND SERIES, AFFINITY EXPDTA X-RAY DIFFRACTION AUTHOR M.FAIRHEAD,D.SHEN,L.K.M.CHAN,E.D.LOWE,T.J.DONOHOE,M.HOWARTH REVDAT 5 20-DEC-23 4CPF 1 REMARK REVDAT 4 08-MAY-19 4CPF 1 REMARK REVDAT 3 01-OCT-14 4CPF 1 JRNL REVDAT 2 27-AUG-14 4CPF 1 JRNL REVDAT 1 06-AUG-14 4CPF 0 JRNL AUTH M.FAIRHEAD,D.SHEN,L.K.M.CHAN,E.D.LOWE,T.J.DONOHOE,M.HOWARTH JRNL TITL LOVE-HATE LIGANDS FOR HIGH RESOLUTION ANALYSIS OF STRAIN IN JRNL TITL 2 ULTRA-STABLE PROTEIN/SMALL MOLECULE INTERACTION. JRNL REF BIOORG.MED.CHEM. V. 22 5476 2014 JRNL REFN ISSN 0968-0896 JRNL PMID 25128469 JRNL DOI 10.1016/J.BMC.2014.07.029 REMARK 2 REMARK 2 RESOLUTION. 1.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 79019 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.7610 - 3.4605 0.64 1964 120 0.2279 0.2608 REMARK 3 2 3.4605 - 2.7471 0.96 2846 148 0.1549 0.1758 REMARK 3 3 2.7471 - 2.4000 1.00 2933 152 0.1478 0.1630 REMARK 3 4 2.4000 - 2.1806 1.00 2904 152 0.1317 0.1477 REMARK 3 5 2.1806 - 2.0243 1.00 2920 153 0.1178 0.1455 REMARK 3 6 2.0243 - 1.9050 1.00 2885 144 0.1169 0.1452 REMARK 3 7 1.9050 - 1.8096 1.00 2865 164 0.1183 0.1255 REMARK 3 8 1.8096 - 1.7308 1.00 2894 156 0.1143 0.1406 REMARK 3 9 1.7308 - 1.6642 1.00 2879 155 0.1164 0.1386 REMARK 3 10 1.6642 - 1.6068 1.00 2877 160 0.1114 0.1408 REMARK 3 11 1.6068 - 1.5566 1.00 2872 153 0.1118 0.1357 REMARK 3 12 1.5566 - 1.5121 1.00 2831 164 0.1084 0.1537 REMARK 3 13 1.5121 - 1.4723 1.00 2853 178 0.1094 0.1321 REMARK 3 14 1.4723 - 1.4363 1.00 2914 105 0.1120 0.1643 REMARK 3 15 1.4363 - 1.4037 1.00 2851 154 0.1171 0.1355 REMARK 3 16 1.4037 - 1.3738 1.00 2855 169 0.1151 0.1537 REMARK 3 17 1.3738 - 1.3463 1.00 2862 127 0.1173 0.1497 REMARK 3 18 1.3463 - 1.3209 1.00 2887 140 0.1190 0.1398 REMARK 3 19 1.3209 - 1.2973 1.00 2871 162 0.1232 0.1542 REMARK 3 20 1.2973 - 1.2753 1.00 2849 136 0.1267 0.1788 REMARK 3 21 1.2753 - 1.2548 0.99 2825 166 0.1392 0.1638 REMARK 3 22 1.2548 - 1.2355 0.96 2711 145 0.1476 0.1727 REMARK 3 23 1.2355 - 1.2173 0.90 2568 135 0.1493 0.2034 REMARK 3 24 1.2173 - 1.2001 0.85 2410 142 0.1605 0.1979 REMARK 3 25 1.2001 - 1.1839 0.79 2259 123 0.1635 0.1687 REMARK 3 26 1.1839 - 1.1685 0.73 2112 86 0.1649 0.2079 REMARK 3 27 1.1685 - 1.1539 0.66 1864 106 0.1801 0.2104 REMARK 3 28 1.1539 - 1.1400 0.58 1682 75 0.1938 0.2232 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.070 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2067 REMARK 3 ANGLE : 1.393 2859 REMARK 3 CHIRALITY : 0.090 312 REMARK 3 PLANARITY : 0.007 394 REMARK 3 DIHEDRAL : 11.619 708 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CPF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1290059591. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79019 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.140 REMARK 200 RESOLUTION RANGE LOW (A) : 32.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.830 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3RY1 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 75% SATURATED AMMONIUM SULPHATE, 25% REMARK 280 1M SODIUM ACETATE PH4.5. SITTING DROP, VAPOR DIFFUSION, SITTING REMARK 280 DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.54000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.06000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.39500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.54000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.06000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.39500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.54000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.06000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.39500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.54000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.06000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.39500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CE2 TYR A 22 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2093 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2096 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 13 REMARK 465 GLU A 14 REMARK 465 LYS A 134 REMARK 465 PRO A 135 REMARK 465 SER A 136 REMARK 465 ALA A 137 REMARK 465 ALA A 138 REMARK 465 SER A 139 REMARK 465 ALA B 13 REMARK 465 GLU B 14 REMARK 465 ALA B 15 REMARK 465 SER B 136 REMARK 465 ALA B 137 REMARK 465 ALA B 138 REMARK 465 SER B 139 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2088 O HOH B 2110 2555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 52 -160.91 67.06 REMARK 500 SER A 52 -168.76 61.43 REMARK 500 ASP A 67 -156.37 -89.84 REMARK 500 ASP A 67 -156.37 -89.66 REMARK 500 GLU A 101 67.27 -118.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 METHYL 4-(2-{5-[(3AS,4S,6AR)-2-OXO-HEXAHYDRO-1H- THIENO[3, REMARK 600 4-D]IMIDAZOLIDIN-4-YL]PENTANEHYDRAZIDO}-3- REMARK 600 [4-(METHOXYCARBONYL)PHENYL]PHENYL)BENZOATE (LH3): REMARK 600 LOVE-HATE LIGAND 3 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LH3 B 1136 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CPE RELATED DB: PDB REMARK 900 WILD-TYPE STREPTAVIDIN IN COMPLEX WITH LOVE-HATE LIGAND 1 (LH1) REMARK 900 RELATED ID: 4CPH RELATED DB: PDB REMARK 900 TRANS-DIVALENT STREPTAVIDIN WITH LOVE-HATE LIGAND 4 REMARK 900 RELATED ID: 4CPI RELATED DB: PDB REMARK 900 STREPTAVIDIN A86D MUTANT WITH LOVE-HATE LIGAND 4 REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINAL METHIONINE REMOVED IN MATURE PROTEIN DBREF 4CPF A 13 139 UNP P22629 SAV_STRAV 37 163 DBREF 4CPF B 13 139 UNP P22629 SAV_STRAV 37 163 SEQRES 1 A 127 ALA GLU ALA GLY ILE THR GLY THR TRP TYR ASN GLN LEU SEQRES 2 A 127 GLY SER THR PHE ILE VAL THR ALA GLY ALA ASP GLY ALA SEQRES 3 A 127 LEU THR GLY THR TYR GLU SER ALA VAL GLY ASN ALA GLU SEQRES 4 A 127 SER ARG TYR VAL LEU THR GLY ARG TYR ASP SER ALA PRO SEQRES 5 A 127 ALA THR ASP GLY SER GLY THR ALA LEU GLY TRP THR VAL SEQRES 6 A 127 ALA TRP LYS ASN ASN TYR ARG ASN ALA HIS SER ALA THR SEQRES 7 A 127 THR TRP SER GLY GLN TYR VAL GLY GLY ALA GLU ALA ARG SEQRES 8 A 127 ILE ASN THR GLN TRP LEU LEU THR SER GLY THR THR GLU SEQRES 9 A 127 ALA ASN ALA TRP LYS SER THR LEU VAL GLY HIS ASP THR SEQRES 10 A 127 PHE THR LYS VAL LYS PRO SER ALA ALA SER SEQRES 1 B 127 ALA GLU ALA GLY ILE THR GLY THR TRP TYR ASN GLN LEU SEQRES 2 B 127 GLY SER THR PHE ILE VAL THR ALA GLY ALA ASP GLY ALA SEQRES 3 B 127 LEU THR GLY THR TYR GLU SER ALA VAL GLY ASN ALA GLU SEQRES 4 B 127 SER ARG TYR VAL LEU THR GLY ARG TYR ASP SER ALA PRO SEQRES 5 B 127 ALA THR ASP GLY SER GLY THR ALA LEU GLY TRP THR VAL SEQRES 6 B 127 ALA TRP LYS ASN ASN TYR ARG ASN ALA HIS SER ALA THR SEQRES 7 B 127 THR TRP SER GLY GLN TYR VAL GLY GLY ALA GLU ALA ARG SEQRES 8 B 127 ILE ASN THR GLN TRP LEU LEU THR SER GLY THR THR GLU SEQRES 9 B 127 ALA ASN ALA TRP LYS SER THR LEU VAL GLY HIS ASP THR SEQRES 10 B 127 PHE THR LYS VAL LYS PRO SER ALA ALA SER HET LH3 B1136 43 HETNAM LH3 METHYL 4-(2-{5-[(3AS,4S,6AR)-2-OXO-HEXAHYDRO-1H- HETNAM 2 LH3 THIENO[3,4-D]IMIDAZOLIDIN-4-YL]PENTANEHYDRAZIDO}-3- HETNAM 3 LH3 [4-(METHOXYCARBONYL)PHENYL]PHENYL)BENZOATE FORMUL 3 LH3 C32 H34 N4 O6 S FORMUL 4 HOH *226(H2 O) HELIX 1 1 THR A 115 LYS A 121 5 7 HELIX 2 2 ASN B 49 GLU B 51 5 3 HELIX 3 3 THR B 115 LYS B 121 5 7 SHEET 1 AA 9 GLY A 19 ASN A 23 0 SHEET 2 AA 9 THR A 28 ALA A 33 -1 O PHE A 29 N TRP A 21 SHEET 3 AA 9 ALA A 38 GLU A 44 -1 O THR A 40 N THR A 32 SHEET 4 AA 9 TYR A 54 TYR A 60 -1 O TYR A 54 N TYR A 43 SHEET 5 AA 9 THR A 71 LYS A 80 -1 O GLY A 74 N ARG A 59 SHEET 6 AA 9 ASN A 85 VAL A 97 -1 N ALA A 86 O TRP A 79 SHEET 7 AA 9 ARG A 103 SER A 112 -1 O ARG A 103 N VAL A 97 SHEET 8 AA 9 THR A 123 LYS A 132 -1 O LEU A 124 N LEU A 110 SHEET 9 AA 9 GLY A 19 ASN A 23 -1 O TYR A 22 N THR A 131 SHEET 1 BA 9 GLY B 19 TYR B 22 0 SHEET 2 BA 9 THR B 28 ALA B 33 -1 O PHE B 29 N TRP B 21 SHEET 3 BA 9 ALA B 38 GLU B 44 -1 O THR B 40 N THR B 32 SHEET 4 BA 9 ARG B 53 TYR B 60 -1 O TYR B 54 N TYR B 43 SHEET 5 BA 9 THR B 71 LYS B 80 -1 O GLY B 74 N ARG B 59 SHEET 6 BA 9 ASN B 85 VAL B 97 -1 N ALA B 86 O TRP B 79 SHEET 7 BA 9 ARG B 103 SER B 112 -1 O ARG B 103 N VAL B 97 SHEET 8 BA 9 THR B 123 THR B 131 -1 O LEU B 124 N LEU B 110 SHEET 9 BA 9 GLY B 19 TYR B 22 -1 O TYR B 22 N THR B 131 SITE 1 AC1 15 TRP A 120 ASN B 23 LEU B 25 SER B 27 SITE 2 AC1 15 TYR B 43 GLU B 44 SER B 45 TRP B 79 SITE 3 AC1 15 ARG B 84 ASN B 85 ALA B 86 THR B 90 SITE 4 AC1 15 TRP B 108 ASP B 128 HOH B2055 CRYST1 47.080 94.120 104.790 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021240 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009543 0.00000