HEADER VIRAL PROTEIN 21-FEB-14 4CQP TITLE CRYSTAL STRUCTURE OF H5 (VN1194) SER227ASN/GLN196ARG MUTANT TITLE 2 HAEMAGGLUTININ CAVEAT 4CQP NAG E 1 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ HA1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HA1 OF TRYPSIN RELEASED ECTODOMAIN, RESIDUES 17-342; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HEMAGGLUTININ HA2; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: HA2 OF TRYPSIN RELEASED ECTODOMAIN, RESIDUES 347-512; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_COMMON: A/VIETNAM/1194/2004(H5N1); SOURCE 4 ORGANISM_TAXID: 644788; SOURCE 5 VARIANT: SER227ASN/GLN196ARG MUTANT; SOURCE 6 GENE: HA; SOURCE 7 EXPRESSION_SYSTEM: GALLUS GALLUS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9031; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 11 ORGANISM_COMMON: A/VIETNAM/1194/2004(H5N1); SOURCE 12 ORGANISM_TAXID: 644788; SOURCE 13 GENE: HA; SOURCE 14 EXPRESSION_SYSTEM: GALLUS GALLUS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9031 KEYWDS VIRAL PROTEIN, SIALIC ACID, GLYCOPROTEIN, VIRUS RECEPTOR, AVIAN FLU, KEYWDS 2 SIALYLLACTOSAMINE, 3SLN, 3'SLN, 6SLN, 6'SLN, LSTA EXPDTA X-RAY DIFFRACTION AUTHOR X.XIONG,H.XIAO,S.R.MARTIN,P.J.COOMBS,J.LIU,P.J.COLLINS,S.G.VACHIERI, AUTHOR 2 P.A.WALKER,Y.P.LIN,J.W.MCCAULEY,S.J.GAMBLIN,J.J.SKEHEL REVDAT 5 20-DEC-23 4CQP 1 HETSYN REVDAT 4 29-JUL-20 4CQP 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 07-NOV-18 4CQP 1 COMPND SOURCE DBREF REVDAT 2 11-JUN-14 4CQP 1 JRNL REVDAT 1 28-MAY-14 4CQP 0 JRNL AUTH X.XIONG,H.XIAO,S.R.MARTIN,P.J.COOMBS,J.LIU,P.J.COLLINS, JRNL AUTH 2 S.G.VACHIERI,P.A.WALKER,Y.P.LIN,J.W.MCCAULEY,S.J.GAMBLIN, JRNL AUTH 3 J.J.SKEHEL JRNL TITL ENHANCED HUMAN RECEPTOR BINDING BY H5 HAEMAGGLUTININS. JRNL REF VIROLOGY V. 456 179 2014 JRNL REFN ISSN 0042-6822 JRNL PMID 24889237 JRNL DOI 10.1016/J.VIROL.2014.03.008 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0046 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 149.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 24721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1327 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1796 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3863 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 182 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 101.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.94000 REMARK 3 B22 (A**2) : 2.94000 REMARK 3 B33 (A**2) : -9.55000 REMARK 3 B12 (A**2) : 1.47000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.362 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.260 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.238 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.053 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4156 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3806 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5648 ; 1.070 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8735 ; 0.677 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 483 ; 5.687 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 202 ;36.389 ;25.099 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 679 ;16.159 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;11.542 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 629 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4622 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 950 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1932 ; 2.521 ; 6.923 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1931 ; 2.510 ; 6.922 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2412 ; 4.091 ;10.384 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2223 ; 3.307 ; 7.631 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 1286 REMARK 3 ORIGIN FOR THE GROUP (A): 33.0718 -18.0030 -2.9123 REMARK 3 T TENSOR REMARK 3 T11: 0.1641 T22: 0.4710 REMARK 3 T33: 0.0920 T12: -0.1246 REMARK 3 T13: 0.0753 T23: -0.1370 REMARK 3 L TENSOR REMARK 3 L11: 0.3545 L22: 0.7185 REMARK 3 L33: 2.4414 L12: -0.2670 REMARK 3 L13: -0.3298 L23: 0.7653 REMARK 3 S TENSOR REMARK 3 S11: -0.0989 S12: -0.2349 S13: 0.0601 REMARK 3 S21: 0.3027 S22: -0.1381 S23: 0.1080 REMARK 3 S31: 0.5534 S32: -0.4749 S33: 0.2370 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 1156 REMARK 3 ORIGIN FOR THE GROUP (A): 39.8722 -22.7919 -53.3592 REMARK 3 T TENSOR REMARK 3 T11: 0.1134 T22: 0.1115 REMARK 3 T33: 0.2502 T12: 0.0381 REMARK 3 T13: -0.0176 T23: -0.0460 REMARK 3 L TENSOR REMARK 3 L11: 1.0947 L22: 0.5549 REMARK 3 L33: 8.9723 L12: -0.4464 REMARK 3 L13: 1.1403 L23: -1.2792 REMARK 3 S TENSOR REMARK 3 S11: 0.0326 S12: 0.0905 S13: 0.0502 REMARK 3 S21: -0.0440 S22: -0.1245 S23: 0.1290 REMARK 3 S31: 0.2298 S32: -0.3292 S33: 0.0919 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. WITH TLS ADDED REMARK 4 REMARK 4 4CQP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1290059776. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26069 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 43.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4BGW REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES/MOPS PH 7.0, 0.05 M MGCL2, REMARK 280 28-30% PEG 550 MME, SEEDED WITH CRUSHED WILD-TYPE VN1194 HA REMARK 280 CRYSTALS. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 50.31750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.05082 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 149.57067 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 50.31750 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 29.05082 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 149.57067 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 50.31750 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 29.05082 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 149.57067 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 50.31750 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 29.05082 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 149.57067 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 50.31750 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 29.05082 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 149.57067 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 50.31750 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 29.05082 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 149.57067 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 58.10164 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 299.14133 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 58.10164 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 299.14133 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 58.10164 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 299.14133 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 58.10164 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 299.14133 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 58.10164 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 299.14133 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 58.10164 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 299.14133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 36150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 64000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 50.31750 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -87.15247 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 100.63500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 322 REMARK 465 ARG A 323 REMARK 465 GLU A 324 REMARK 465 THR A 325 REMARK 465 ARG A 326 REMARK 465 SER B 163 REMARK 465 GLU B 164 REMARK 465 GLU B 165 REMARK 465 ALA B 166 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 166 ND2 ASN A 168 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 53 -117.77 56.90 REMARK 500 PRO A 74 -176.94 -69.90 REMARK 500 ASP A 88 -105.87 -105.39 REMARK 500 CYS A 135 70.81 -117.31 REMARK 500 ARG A 192 -61.22 63.19 REMARK 500 ARG B 127 -122.80 61.46 REMARK 500 THR B 156 46.56 -109.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CQQ RELATED DB: PDB REMARK 900 H5 (VN1194) SER227ASN/GLN196ARG MUTANT HAEMAGGLUTININ IN COMPLEX REMARK 900 WITH AVIAN RECEPTOR ANALOGUE 3'SLN REMARK 900 RELATED ID: 4CQR RELATED DB: PDB REMARK 900 H5 (VN1194) SER227ASN/GLN196ARG MUTANT HAEMAGGLUTININ IN COMPLEX REMARK 900 WITH HUMAN RECEPTOR ANALOGUE 6'SLN REMARK 900 RELATED ID: 4CQS RELATED DB: PDB REMARK 900 H5 (VN1194) ASN186LYS MUTANT HAEMAGGLUTININ IN COMPLEX WITH AVIAN REMARK 900 RECEPTOR ANALOGUE 3'SLN REMARK 900 RELATED ID: 4CQT RELATED DB: PDB REMARK 900 H5 (VN1194) ASN186LYS MUTANT HAEMAGGLUTININ IN COMPLEX WITH AVIAN REMARK 900 RECEPTOR ANALOGUE 3'SLN REMARK 900 RELATED ID: 4CQU RELATED DB: PDB REMARK 900 H5 (VN1194) ASN186LYS MUTANT HAEMAGGLUTININ IN COMPLEX WITH HUMAN REMARK 900 RECEPTOR ANALOGUE 6'SLN REMARK 900 RELATED ID: 4CQV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF H5 (TYTY) DEL133/ILE155THR MUTANT REMARK 900 HAEMAGGLUTININ REMARK 900 RELATED ID: 4CQW RELATED DB: PDB REMARK 900 H5 (TYTY) DEL133/ILE155THR MUTANT HAEMAGGLUTININ IN COMPLEX WITH REMARK 900 AVIAN RECEPTOR ANALOGUE 3'SLN REMARK 900 RELATED ID: 4CQX RELATED DB: PDB REMARK 900 H5 (TYTY) DEL133/ILE155THR MUTANT HAEMAGGLUTININ IN COMPLEX WITH REMARK 900 HUMAN RECEPTOR ANALOGUE 6'SLN REMARK 900 RELATED ID: 4CQY RELATED DB: PDB REMARK 900 H5 (TYTY) DEL133/ILE155THR MUTANT HAEMAGGLUTININ IN COMPLEX WITH REMARK 900 AVIAN RECEPTOR ANALOGUE LSTA REMARK 900 RELATED ID: 4CQZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF H5 (VN1194) GLN196ARG MUTANT HAEMAGGLUTININ REMARK 900 RELATED ID: 4CR0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF H5 (VN1194) ASN186LYS/GLY143ARG MUTANT REMARK 900 HAEMAGGLUTININ REMARK 999 REMARK 999 SEQUENCE REMARK 999 MULTIBASIC SITE REMOVED DBREF 4CQP A 1 326 UNP Q6DQ34 Q6DQ34_9INFA 17 342 DBREF 4CQP B 1 166 UNP Q6DQ34 Q6DQ34_9INFA 347 512 SEQADV 4CQP ARG A 192 UNP Q6DQ34 GLN 208 ENGINEERED MUTATION SEQADV 4CQP ASN A 223 UNP Q6DQ34 SER 239 ENGINEERED MUTATION SEQADV 4CQP THR A 325 UNP Q6DQ34 ARG 341 CONFLICT SEQRES 1 A 326 ASP GLN ILE CYS ILE GLY TYR HIS ALA ASN ASN SER THR SEQRES 2 A 326 GLU GLN VAL ASP THR ILE MET GLU LYS ASN VAL THR VAL SEQRES 3 A 326 THR HIS ALA GLN ASP ILE LEU GLU LYS THR HIS ASN GLY SEQRES 4 A 326 LYS LEU CYS ASP LEU ASP GLY VAL LYS PRO LEU ILE LEU SEQRES 5 A 326 ARG ASP CYS SER VAL ALA GLY TRP LEU LEU GLY ASN PRO SEQRES 6 A 326 MET CYS ASP GLU PHE ILE ASN VAL PRO GLU TRP SER TYR SEQRES 7 A 326 ILE VAL GLU LYS ALA ASN PRO VAL ASN ASP LEU CYS TYR SEQRES 8 A 326 PRO GLY ASP PHE ASN ASP TYR GLU GLU LEU LYS HIS LEU SEQRES 9 A 326 LEU SER ARG ILE ASN HIS PHE GLU LYS ILE GLN ILE ILE SEQRES 10 A 326 PRO LYS SER SER TRP SER SER HIS GLU ALA SER LEU GLY SEQRES 11 A 326 VAL SER SER ALA CYS PRO TYR GLN GLY LYS SER SER PHE SEQRES 12 A 326 PHE ARG ASN VAL VAL TRP LEU ILE LYS LYS ASN SER THR SEQRES 13 A 326 TYR PRO THR ILE LYS ARG SER TYR ASN ASN THR ASN GLN SEQRES 14 A 326 GLU ASP LEU LEU VAL LEU TRP GLY ILE HIS HIS PRO ASN SEQRES 15 A 326 ASP ALA ALA GLU GLN THR LYS LEU TYR ARG ASN PRO THR SEQRES 16 A 326 THR TYR ILE SER VAL GLY THR SER THR LEU ASN GLN ARG SEQRES 17 A 326 LEU VAL PRO ARG ILE ALA THR ARG SER LYS VAL ASN GLY SEQRES 18 A 326 GLN ASN GLY ARG MET GLU PHE PHE TRP THR ILE LEU LYS SEQRES 19 A 326 PRO ASN ASP ALA ILE ASN PHE GLU SER ASN GLY ASN PHE SEQRES 20 A 326 ILE ALA PRO GLU TYR ALA TYR LYS ILE VAL LYS LYS GLY SEQRES 21 A 326 ASP SER THR ILE MET LYS SER GLU LEU GLU TYR GLY ASN SEQRES 22 A 326 CYS ASN THR LYS CYS GLN THR PRO MET GLY ALA ILE ASN SEQRES 23 A 326 SER SER MET PRO PHE HIS ASN ILE HIS PRO LEU THR ILE SEQRES 24 A 326 GLY GLU CYS PRO LYS TYR VAL LYS SER ASN ARG LEU VAL SEQRES 25 A 326 LEU ALA THR GLY LEU ARG ASN SER PRO GLN ARG GLU THR SEQRES 26 A 326 ARG SEQRES 1 B 166 GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE GLU GLY GLY SEQRES 2 B 166 TRP GLN GLY MET VAL ASP GLY TRP TYR GLY TYR HIS HIS SEQRES 3 B 166 SER ASN GLU GLN GLY SER GLY TYR ALA ALA ASP LYS GLU SEQRES 4 B 166 SER THR GLN LYS ALA ILE ASP GLY VAL THR ASN LYS VAL SEQRES 5 B 166 ASN SER ILE ILE ASP LYS MET ASN THR GLN PHE GLU ALA SEQRES 6 B 166 VAL GLY ARG GLU PHE ASN ASN LEU GLU ARG ARG ILE GLU SEQRES 7 B 166 ASN LEU ASN LYS LYS MET GLU ASP GLY PHE LEU ASP VAL SEQRES 8 B 166 TRP THR TYR ASN ALA GLU LEU LEU VAL LEU MET GLU ASN SEQRES 9 B 166 GLU ARG THR LEU ASP PHE HIS ASP SER ASN VAL LYS ASN SEQRES 10 B 166 LEU TYR ASP LYS VAL ARG LEU GLN LEU ARG ASP ASN ALA SEQRES 11 B 166 LYS GLU LEU GLY ASN GLY CYS PHE GLU PHE TYR HIS LYS SEQRES 12 B 166 CYS ASP ASN GLU CYS MET GLU SER VAL ARG ASN GLY THR SEQRES 13 B 166 TYR ASP TYR PRO GLN TYR SER GLU GLU ALA MODRES 4CQP ASN A 11 ASN GLYCOSYLATION SITE MODRES 4CQP ASN A 23 ASN GLYCOSYLATION SITE MODRES 4CQP ASN A 165 ASN GLYCOSYLATION SITE MODRES 4CQP ASN A 286 ASN GLYCOSYLATION SITE MODRES 4CQP ASN B 154 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET MAN D 3 11 HET BMA D 4 11 HET MAN D 5 11 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET NAG A1011 14 HET NAG A1286 14 HET MPO A1322 13 HET MPO B1163 13 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MPO 3[N-MORPHOLINO]PROPANE SULFONIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 4 MAN 2(C6 H12 O6) FORMUL 4 BMA 2(C6 H12 O6) FORMUL 8 MPO 2(C7 H15 N O4 S) FORMUL 10 HOH *23(H2 O) HELIX 1 1 SER A 56 GLY A 63 1 8 HELIX 2 2 ASN A 64 ILE A 71 5 8 HELIX 3 3 ASP A 97 SER A 106 1 10 HELIX 4 4 PRO A 118 TRP A 122 5 5 HELIX 5 5 ASP A 183 ARG A 192 1 10 HELIX 6 6 ASP B 37 ASN B 60 1 24 HELIX 7 7 GLU B 74 ARG B 127 1 54 HELIX 8 8 ASP B 145 GLY B 155 1 11 SHEET 1 BA 5 GLY B 31 ALA B 36 0 SHEET 2 BA 5 TYR B 22 ASN B 28 -1 O TYR B 24 N ALA B 35 SHEET 3 BA 5 GLN A 2 TYR A 7 -1 O GLN A 2 N SER B 27 SHEET 4 BA 5 CYS B 137 PHE B 140 -1 O PHE B 138 N ILE A 3 SHEET 5 BA 5 ALA B 130 GLU B 132 -1 O LYS B 131 N GLU B 139 SHEET 1 AA 2 GLN A 15 VAL A 16 0 SHEET 2 AA 2 VAL A 24 THR A 25 -1 O VAL A 24 N VAL A 16 SHEET 1 AB 2 ALA A 29 ASP A 31 0 SHEET 2 AB 2 VAL A 312 ALA A 314 -1 O LEU A 313 N GLN A 30 SHEET 1 AC 3 LEU A 33 GLU A 34 0 SHEET 2 AC 3 PHE A 291 HIS A 292 1 O PHE A 291 N GLU A 34 SHEET 3 AC 3 LYS A 304 TYR A 305 1 O LYS A 304 N HIS A 292 SHEET 1 AD 2 LEU A 41 LEU A 44 0 SHEET 2 AD 2 TYR A 271 THR A 276 1 N GLY A 272 O LEU A 41 SHEET 1 AE 3 LEU A 50 ARG A 53 0 SHEET 2 AE 3 ILE A 79 GLU A 81 1 O VAL A 80 N LEU A 52 SHEET 3 AE 3 ILE A 264 LYS A 266 1 O MET A 265 N GLU A 81 SHEET 1 AF 5 GLY A 93 PHE A 95 0 SHEET 2 AF 5 ARG A 225 LEU A 233 1 O MET A 226 N ASP A 94 SHEET 3 AF 5 ASP A 171 HIS A 180 -1 O LEU A 172 N LEU A 233 SHEET 4 AF 5 PHE A 247 PRO A 250 -1 O ILE A 248 N GLY A 177 SHEET 5 AF 5 VAL A 147 TRP A 149 -1 O VAL A 148 N ALA A 249 SHEET 1 AG 5 GLY A 93 PHE A 95 0 SHEET 2 AG 5 ARG A 225 LEU A 233 1 O MET A 226 N ASP A 94 SHEET 3 AG 5 ASP A 171 HIS A 180 -1 O LEU A 172 N LEU A 233 SHEET 4 AG 5 TYR A 252 LYS A 259 -1 O TYR A 254 N LEU A 173 SHEET 5 AG 5 ILE A 108 GLN A 115 -1 N ASN A 109 O LYS A 258 SHEET 1 AH 2 SER A 132 TYR A 137 0 SHEET 2 AH 2 LYS A 140 SER A 142 -1 O LYS A 140 N TYR A 137 SHEET 1 AI 4 ILE A 160 ASN A 165 0 SHEET 2 AI 4 ALA A 238 SER A 243 -1 O ILE A 239 N TYR A 164 SHEET 3 AI 4 ILE A 198 GLY A 201 -1 O SER A 199 N GLU A 242 SHEET 4 AI 4 ASN A 206 LEU A 209 -1 O GLN A 207 N VAL A 200 SHEET 1 AJ 3 GLY A 283 ALA A 284 0 SHEET 2 AJ 3 CYS A 278 THR A 280 -1 O THR A 280 N GLY A 283 SHEET 3 AJ 3 ILE A 299 GLY A 300 -1 O ILE A 299 N GLN A 279 SSBOND 1 CYS A 4 CYS B 137 1555 1555 2.07 SSBOND 2 CYS A 42 CYS A 274 1555 1555 2.05 SSBOND 3 CYS A 55 CYS A 67 1555 1555 2.05 SSBOND 4 CYS A 90 CYS A 135 1555 1555 2.07 SSBOND 5 CYS A 278 CYS A 302 1555 1555 2.06 SSBOND 6 CYS B 144 CYS B 148 1555 1555 2.06 LINK ND2 ASN A 11 C1 NAG A1011 1555 1555 1.46 LINK ND2 ASN A 23 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 165 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 286 C1 NAG A1286 1555 1555 1.45 LINK ND2 ASN B 154 C1 NAG E 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 MAN D 3 1555 1555 1.45 LINK O3 MAN D 3 C1 BMA D 4 1555 1555 1.45 LINK O6 MAN D 3 C1 MAN D 5 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.45 CRYST1 100.635 100.635 448.712 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009937 0.005737 0.000000 0.00000 SCALE2 0.000000 0.011474 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002229 0.00000