HEADER HYDROLASE 26-FEB-14 4CRG TITLE CREATING NOVEL F1 INHIBITORS THROUGH FRAGMENT BASED LEAD TITLE 2 GENERATION AND STRUCTURE AIDED DRUG DESIGN COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR XI; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 388-625; COMPND 5 SYNONYM: FXI, PLASMA THROMBOPLASTIN ANTECEDENT, PTA, COAGULATION COMPND 6 FACTOR XIA LIGHT CHAIN; COMPND 7 EC: 3.4.21.27; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.SANDMARK,L.OSTER,O.FJELLSTROM,S.AKKAYA,H.G.BEISEL,P.O.ERIKSSON, AUTHOR 2 K.ERIXON,D.GUSTAFSSON,U.JURVA,D.KANG,D.KARIS,W.KNECHT,V.NERME, AUTHOR 3 I.NILSSON,T.OLSSON,A.REDZIC,R.ROTH,A.TIGERSTROM REVDAT 1 11-FEB-15 4CRG 0 JRNL AUTH O.FJELLSTROM,S.AKKAYA,H.BEISEL,P.ERIKSSON,K.ERIXON, JRNL AUTH 2 D.GUSTAFSSON,U.JURVA,D.KANG,D.KARIS,W.KNECHT,V.NERME, JRNL AUTH 3 I.NILSSON,T.OLSSON,A.REDZIC,R.ROTH,J.SANDMARK,A.TIGERSTROM, JRNL AUTH 4 L.OSTER JRNL TITL CREATING NOVEL ACTIVATED FACTOR XI INHIBITORS THROUGH JRNL TITL 2 FRAGMENT BASED LEAD GENERATION AND STRUCTURE AIDED DRUG JRNL TITL 3 DESIGN. JRNL REF PLOS ONE V. 10 13705 2015 JRNL REFN ISSN 1932-6203 JRNL PMID 25629509 JRNL DOI 10.1371/JOURNAL.PONE.0113705 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,WOMACK; REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.88 REMARK 3 NUMBER OF REFLECTIONS : 75043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.1764 REMARK 3 R VALUE (WORKING SET) : 0.1755 REMARK 3 FREE R VALUE : 0.1951 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.03 REMARK 3 FREE R VALUE TEST SET COUNT : 3777 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.28 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.88 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4211 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2843 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3982 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE : 0.2884 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.44 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 229 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1986 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 435 REMARK 3 SOLVENT ATOMS : 333 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.0000 REMARK 3 B22 (A**2) : 0.0000 REMARK 3 B33 (A**2) : 0.0000 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.045 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.047 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.043 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.045 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.9336 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.9247 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2158 ; 2.00 ; HARMONIC REMARK 3 BOND ANGLES : 2951 ; 2.00 ; HARMONIC REMARK 3 TORSION ANGLES : 787 ; 2.00 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 51 ; 2.00 ; HARMONIC REMARK 3 GENERAL PLANES : 355 ; 5.00 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2158 ; 20.00 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 270 ; 5.00 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2680 ; 4.00 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.11 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.63 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.58 REMARK 3 REMARK 3 TLS DETAILS. REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|370 - A|607 } REMARK 3 ORIGIN FOR THE GROUP (A): -28.5217 -42.8729 -10.8567 REMARK 3 T TENSOR REMARK 3 T11: 0.0404 T22: 0.0037 REMARK 3 T33: 0.0263 T12: 0.0152 REMARK 3 T13: 0.0067 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.7628 L22: 0.5007 REMARK 3 L33: 0.7934 L12: -0.1013 REMARK 3 L13: -0.3462 L23: 0.0872 REMARK 3 S TENSOR REMARK 3 S11: 0.0266 S12: -0.0076 S13: 0.0549 REMARK 3 S21: -0.0185 S22: 0.0179 S23: -0.0373 REMARK 3 S31: -0.0365 S32: 0.0276 S33: -0.0445 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY. REMARK 3 THE LIGAND J4X IS PLACED IN THE DENSITY IN TWO DIFFERENT REMARK 3 ORIENTATIONS REMARK 4 REMARK 4 4CRG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-FEB-14. REMARK 100 THE PDBE ID CODE IS EBI-59836. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75396 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.25 REMARK 200 RESOLUTION RANGE LOW (A) : 49.30 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : 5.2 REMARK 200 R MERGE (I) : 0.07 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.80 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.5 REMARK 200 R MERGE FOR SHELL (I) : 0.74 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, 0.1M REMARK 280 TRIS-CL PH 8.5, 0.2M NACL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 60.43700 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 60.43700 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 60.43700 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 60.43700 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 60.43700 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 60.43700 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 60.43700 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 60.43700 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 60.43700 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 60.43700 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 60.43700 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 60.43700 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 60.43700 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 60.43700 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 60.43700 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 60.43700 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 60.43700 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 60.43700 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 60.43700 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 60.43700 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 60.43700 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 60.43700 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 60.43700 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 60.43700 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 60.43700 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 60.43700 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 60.43700 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 60.43700 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 60.43700 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 60.43700 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 60.43700 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 60.43700 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 60.43700 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 60.43700 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 60.43700 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 60.43700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -183.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 1.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O4 SO4 A1496 LIES ON A SPECIAL POSITION. REMARK 375 S SO4 A1496 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2209 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 131 REMARK 465 VAL A 132 REMARK 465 ILE A 132A REMARK 465 VAL A 245 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 148 -143.98 -150.13 REMARK 500 SER A 214 -61.94 -124.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AB" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1489 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1490 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1491 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1492 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE J4X A1493 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1494 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1495 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1496 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1497 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CR5 RELATED DB: PDB REMARK 900 CREATING NOVEL F1 INHIBITORS THROUGH FRAGMENT BASED LEAD REMARK 900 GENERATION AND STRUCTURE AIDED DRUG DESIGN REMARK 900 RELATED ID: 4CR9 RELATED DB: PDB REMARK 900 CREATING NOVEL F1 INHIBITORS THROUGH FRAGMENT BASED LEAD REMARK 900 GENERATION AND STRUCTURE AIDED DRUG DESIGN REMARK 900 RELATED ID: 4CRA RELATED DB: PDB REMARK 900 CREATING NOVEL F1 INHIBITORS THROUGH FRAGMENT BASED LEAD REMARK 900 GENERATION AND STRUCTURE AIDED DRUG DESIGN REMARK 900 RELATED ID: 4CRB RELATED DB: PDB REMARK 900 CREATING NOVEL F1 INHIBITORS THROUGH FRAGMENT BASED LEAD REMARK 900 GENERATION AND STRUCTURE AIDED DRUG DESIGN REMARK 900 RELATED ID: 4CRC RELATED DB: PDB REMARK 900 CREATING NOVEL F1 INHIBITORS THROUGH FRAGMENT BASED LEAD REMARK 900 GENERATION AND STRUCTURE AIDED DRUG DESIGN REMARK 900 RELATED ID: 4CRD RELATED DB: PDB REMARK 900 CREATING NOVEL F1 INHIBITORS THROUGH FRAGMENT BASED LEAD REMARK 900 GENERATION AND STRUCTURE AIDED DRUG DESIGN REMARK 900 RELATED ID: 4CRE RELATED DB: PDB REMARK 900 CREATING NOVEL F1 INHIBITORS THROUGH FRAGMENT BASED LEAD REMARK 900 GENERATION AND STRUCTURE AIDED DRUG DESIGN REMARK 900 RELATED ID: 4CRF RELATED DB: PDB REMARK 900 CREATING NOVEL F1 INHIBITORS THROUGH FRAGMENT BASED LEAD REMARK 900 GENERATION AND STRUCTURE AIDED DRUG DESIGN REMARK 999 REMARK 999 SEQUENCE REMARK 999 MUTANT, S75A K78A T97A C123S DBREF 4CRG A 16 245 UNP P03951 FA11_HUMAN 388 625 SEQADV 4CRG ALA A 75 UNP P03951 SER 452 ENGINEERED MUTATION SEQADV 4CRG ALA A 78 UNP P03951 LYS 455 ENGINEERED MUTATION SEQADV 4CRG ALA A 115 UNP P03951 THR 493 ENGINEERED MUTATION SEQADV 4CRG SER A 123 UNP P03951 CYS 500 ENGINEERED MUTATION SEQRES 1 A 238 ILE VAL GLY GLY THR ALA SER VAL ARG GLY GLU TRP PRO SEQRES 2 A 238 TRP GLN VAL THR LEU HIS THR THR SER PRO THR GLN ARG SEQRES 3 A 238 HIS LEU CYS GLY GLY SER ILE ILE GLY ASN GLN TRP ILE SEQRES 4 A 238 LEU THR ALA ALA HIS CYS PHE TYR GLY VAL GLU SER PRO SEQRES 5 A 238 LYS ILE LEU ARG VAL TYR SER GLY ILE LEU ASN GLN ALA SEQRES 6 A 238 GLU ILE ALA GLU ASP THR SER PHE PHE GLY VAL GLN GLU SEQRES 7 A 238 ILE ILE ILE HIS ASP GLN TYR LYS MET ALA GLU SER GLY SEQRES 8 A 238 TYR ASP ILE ALA LEU LEU LYS LEU GLU THR THR VAL ASN SEQRES 9 A 238 TYR ALA ASP SER GLN ARG PRO ILE SER LEU PRO SER LYS SEQRES 10 A 238 GLY ASP ARG ASN VAL ILE TYR THR ASP CYS TRP VAL THR SEQRES 11 A 238 GLY TRP GLY TYR ARG LYS LEU ARG ASP LYS ILE GLN ASN SEQRES 12 A 238 THR LEU GLN LYS ALA LYS ILE PRO LEU VAL THR ASN GLU SEQRES 13 A 238 GLU CYS GLN LYS ARG TYR ARG GLY HIS LYS ILE THR HIS SEQRES 14 A 238 LYS MET ILE CYS ALA GLY TYR ARG GLU GLY GLY LYS ASP SEQRES 15 A 238 ALA CYS LYS GLY ASP SER GLY GLY PRO LEU SER CYS LYS SEQRES 16 A 238 HIS ASN GLU VAL TRP HIS LEU VAL GLY ILE THR SER TRP SEQRES 17 A 238 GLY GLU GLY CYS ALA GLN ARG GLU ARG PRO GLY VAL TYR SEQRES 18 A 238 THR ASN VAL VAL GLU TYR VAL ASP TRP ILE LEU GLU LYS SEQRES 19 A 238 THR GLN ALA VAL HET GOL A1489 6 HET GOL A1490 6 HET GOL A1491 6 HET GOL A1492 6 HET J4X A1493 58 HET SO4 A1494 5 HET SO4 A1495 5 HET SO4 A1496 5 HET SO4 A1497 5 HETNAM J4X 6-CARBAMIMIDOYL-N-PHENYL-4-(PYRIMIDIN-2- HETNAM 2 J4X YLAMINO)NAPHTHALENE-2-CARBOXAMIDE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 J4X C22 H18 N6 O FORMUL 3 SO4 4(O4 S 2-) FORMUL 4 GOL 4(C3 H8 O3) FORMUL 5 HOH *333(H2 O) HELIX 1 1 ALA A 55 TYR A 59A 5 6 HELIX 2 2 SER A 61 LYS A 63 5 3 HELIX 3 3 GLN A 74 ILE A 77 5 4 HELIX 4 4 MET A 96 GLY A 100 5 5 HELIX 5 5 SER A 126 ARG A 130 5 5 HELIX 6 6 THR A 164 TYR A 172 1 9 HELIX 7 7 TYR A 234 GLN A 243 1 10 SHEET 1 AA 8 THR A 20 ALA A 21 0 SHEET 2 AA 8 GLN A 156 LYS A 159 -1 O LYS A 157 N THR A 20 SHEET 3 AA 8 CYS A 136 GLY A 140 -1 O VAL A 138 N ALA A 158 SHEET 4 AA 8 PRO A 198 HIS A 202A-1 O PRO A 198 N THR A 139 SHEET 5 AA 8 VAL A 202D TRP A 215 -1 O VAL A 202D N HIS A 202A SHEET 6 AA 8 GLY A 226 ASN A 230 -1 O VAL A 227 N TRP A 215 SHEET 7 AA 8 MET A 180 ALA A 183 -1 O ILE A 181 N TYR A 228 SHEET 8 AA 8 LEU A 162 VAL A 163 -1 O VAL A 163 N CYS A 182 SHEET 1 AB 7 GLN A 30 THR A 35 0 SHEET 2 AB 7 ARG A 37D GLY A 46 -1 O ARG A 37D N THR A 35 SHEET 3 AB 7 TRP A 51 THR A 54 -1 O TRP A 51 N ILE A 45 SHEET 4 AB 7 ALA A 104 LEU A 108 -1 O ALA A 104 N THR A 54 SHEET 5 AB 7 PHE A 83 ILE A 90 -1 N GLN A 86 O LYS A 107 SHEET 6 AB 7 LEU A 65 TYR A 68 -1 O LEU A 65 N VAL A 85 SHEET 7 AB 7 GLN A 30 THR A 35 -1 O THR A 32 N TYR A 68 SSBOND 1 CYS A 40 CYS A 58 1555 1555 2.04 SSBOND 2 CYS A 136 CYS A 201 1555 1555 2.08 SSBOND 3 CYS A 168 CYS A 182 1555 1555 2.05 SSBOND 4 CYS A 191 CYS A 219 1555 1555 2.05 CISPEP 1 SER A 37 PRO A 37A 0 -1.60 SITE 1 AC1 10 LEU A 39 CYS A 40 HIS A 57 CYS A 58 SITE 2 AC1 10 LYS A 192 GLY A 193 SER A 195 J4X A1493 SITE 3 AC1 10 HOH A2060 HOH A2325 SITE 1 AC2 8 HIS A 34 ARG A 37D HIS A 38 GLN A 74 SITE 2 AC2 8 HOH A2049 HOH A2116 HOH A2327 HOH A2328 SITE 1 AC3 8 GLU A 26 TRP A 27 TRP A 137 LYS A 157 SITE 2 AC3 8 LYS A 202 SO4 A1494 HOH A2024 HOH A2025 SITE 1 AC4 5 GLY A 25 GLU A 26 ARG A 119 SO4 A1494 SITE 2 AC4 5 HOH A2023 SITE 1 AC5 19 HIS A 57 SER A 81A ASN A 113 TYR A 114 SITE 2 AC5 19 LEU A 146 ASP A 189 ALA A 190 SER A 195 SITE 3 AC5 19 TRP A 215 GLY A 216 GLU A 217 GLY A 218 SITE 4 AC5 19 GLY A 226 GOL A1489 SO4 A1495 HOH A2078 SITE 5 AC5 19 HOH A2264 HOH A2299 HOH A2330 SITE 1 AC6 6 LYS A 202 TRP A 203 GOL A1491 GOL A1492 SITE 2 AC6 6 HOH A2024 HOH A2331 SITE 1 AC7 8 PHE A 83 ASN A 113 GLN A 118 ARG A 147 SITE 2 AC7 8 J4X A1493 HOH A2111 HOH A2133 HOH A2192 SITE 1 AC8 2 LYS A 127 ARG A 130 SITE 1 AC9 9 THR A 20 ALA A 21 GLN A 48 GLN A 86 SITE 2 AC9 9 LYS A 107 HOH A2008 HOH A2239 HOH A2332 SITE 3 AC9 9 HOH A2333 CRYST1 120.874 120.874 120.874 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008273 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008273 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008273 0.00000