HEADER GENE REGULATION 01-MAR-14 4CRV TITLE COMPLEX OF HUMAN CNOT9 AND CNOT1 INCLUDING TWO TRYPTOPHANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CNOT1 CN9BD DOMAIN, DUF3819, RESIDUES 1356-1607; COMPND 5 SYNONYM: CNOT1, CCR4-ASSOCIATED FACTOR 1, NEGATIVE REGULATOR OF COMPND 6 TRANSCRIPTION SUBUNIT 1 HOMOLOG, NOT1H, HNOT1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CELL DIFFERENTIATION PROTEIN RCD1 HOMOLOG; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: CNOT9 ARM DOMAIN, RESIDUES 19-285; COMPND 12 SYNONYM: CNOT9, CAF40 HOMOLOGG, RCD-1, CCR4-NOT TRANSCRIPTION COMPLEX COMPND 13 SUBUNIT 9, RCD-1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETMCN(PNYC); SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PETMCN(PNEA) KEYWDS GENE REGULATION, TNRC6 BINDING, MIRISC, MRNA SILENCING, MRNA KEYWDS 2 DEADENYLATION, ARGONAUTE, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.BOLAND,Y.CHEN,E.IZAURRALDE,O.WEICHENRIEDER REVDAT 3 20-DEC-23 4CRV 1 REMARK REVDAT 2 18-JUN-14 4CRV 1 JRNL REVDAT 1 07-MAY-14 4CRV 0 JRNL AUTH Y.CHEN,A.BOLAND,D.KUZUOGLU-OZTURK,P.BAWANKAR,B.LOH, JRNL AUTH 2 C.T.CHANG,O.WEICHENRIEDER,E.IZAURRALDE JRNL TITL A DDX6-CNOT1 COMPLEX AND W-BINDING POCKETS IN CNOT9 REVEAL JRNL TITL 2 DIRECT LINKS BETWEEN MIRNA TARGET RECOGNITION AND SILENCING JRNL REF MOL.CELL V. 54 737 2014 JRNL REFN ISSN 1097-2765 JRNL PMID 24768540 JRNL DOI 10.1016/J.MOLCEL.2014.03.034 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 45057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2254 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.1651 - 5.1647 1.00 2776 143 0.1518 0.1813 REMARK 3 2 5.1647 - 4.0997 1.00 2719 145 0.1446 0.1654 REMARK 3 3 4.0997 - 3.5815 1.00 2719 139 0.1649 0.2016 REMARK 3 4 3.5815 - 3.2541 1.00 2692 142 0.1831 0.2406 REMARK 3 5 3.2541 - 3.0208 1.00 2682 140 0.2040 0.2654 REMARK 3 6 3.0208 - 2.8427 1.00 2699 145 0.1945 0.2293 REMARK 3 7 2.8427 - 2.7004 1.00 2657 142 0.1886 0.2554 REMARK 3 8 2.7004 - 2.5828 1.00 2670 139 0.1831 0.2037 REMARK 3 9 2.5828 - 2.4834 0.99 2636 143 0.1822 0.2179 REMARK 3 10 2.4834 - 2.3977 0.99 2681 135 0.1850 0.2518 REMARK 3 11 2.3977 - 2.3227 0.99 2659 143 0.2006 0.2405 REMARK 3 12 2.3227 - 2.2563 0.99 2669 137 0.2145 0.2906 REMARK 3 13 2.2563 - 2.1969 0.99 2650 143 0.2248 0.2554 REMARK 3 14 2.1969 - 2.1433 0.99 2610 137 0.2396 0.3122 REMARK 3 15 2.1433 - 2.0946 0.99 2663 137 0.2676 0.3144 REMARK 3 16 2.0946 - 2.0500 0.98 2621 144 0.3007 0.3196 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4105 REMARK 3 ANGLE : 0.883 5565 REMARK 3 CHIRALITY : 0.033 648 REMARK 3 PLANARITY : 0.005 713 REMARK 3 DIHEDRAL : 13.491 1552 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 1353 THROUGH 1386 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.3118 -13.5179 35.8989 REMARK 3 T TENSOR REMARK 3 T11: 0.8730 T22: 0.7269 REMARK 3 T33: 1.0119 T12: 0.0932 REMARK 3 T13: -0.1871 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 2.8381 L22: 0.6976 REMARK 3 L33: 0.7841 L12: 0.2372 REMARK 3 L13: -0.8417 L23: 0.1644 REMARK 3 S TENSOR REMARK 3 S11: -0.2201 S12: 0.4222 S13: -1.1398 REMARK 3 S21: 0.3657 S22: 0.1655 S23: -0.7119 REMARK 3 S31: 0.6836 S32: 0.5826 S33: 0.0117 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 1387 THROUGH 1552 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.5297 -0.6886 35.6749 REMARK 3 T TENSOR REMARK 3 T11: 0.4753 T22: 0.4222 REMARK 3 T33: 0.4626 T12: 0.0107 REMARK 3 T13: -0.0303 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 2.0731 L22: 1.2023 REMARK 3 L33: 1.8013 L12: 0.4239 REMARK 3 L13: 0.9102 L23: 0.1503 REMARK 3 S TENSOR REMARK 3 S11: 0.0781 S12: -0.2583 S13: 0.1321 REMARK 3 S21: 0.2639 S22: 0.0059 S23: -0.2473 REMARK 3 S31: 0.2219 S32: 0.1846 S33: 0.0162 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 1553 THROUGH 1587 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8888 -10.1705 33.3038 REMARK 3 T TENSOR REMARK 3 T11: 0.7292 T22: 0.6223 REMARK 3 T33: 0.6713 T12: -0.1225 REMARK 3 T13: 0.0711 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 0.5873 L22: 0.6869 REMARK 3 L33: 0.9490 L12: 0.5138 REMARK 3 L13: 0.0152 L23: 0.1518 REMARK 3 S TENSOR REMARK 3 S11: 0.0685 S12: 0.0755 S13: -1.3313 REMARK 3 S21: 0.4447 S22: -0.0740 S23: 0.4274 REMARK 3 S31: 0.5989 S32: -0.2222 S33: 0.0620 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 1603 THROUGH 1603 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.0705 29.8709 13.6925 REMARK 3 T TENSOR REMARK 3 T11: 1.4501 T22: 1.0232 REMARK 3 T33: 1.2562 T12: 0.1049 REMARK 3 T13: 0.1478 T23: 0.1975 REMARK 3 L TENSOR REMARK 3 L11: 0.7885 L22: 2.0184 REMARK 3 L33: 0.6811 L12: 1.1866 REMARK 3 L13: 0.4981 L23: 1.0412 REMARK 3 S TENSOR REMARK 3 S11: -0.0368 S12: -0.0811 S13: 0.1029 REMARK 3 S21: 0.0785 S22: -0.0977 S23: -0.1024 REMARK 3 S31: -0.1056 S32: 0.0945 S33: 0.0042 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESID 15 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6149 -3.9618 18.3725 REMARK 3 T TENSOR REMARK 3 T11: 0.3784 T22: 0.3996 REMARK 3 T33: 0.4058 T12: -0.0381 REMARK 3 T13: 0.0053 T23: -0.0592 REMARK 3 L TENSOR REMARK 3 L11: 1.8710 L22: 1.3030 REMARK 3 L33: 1.6496 L12: -0.1573 REMARK 3 L13: -0.0340 L23: 0.2842 REMARK 3 S TENSOR REMARK 3 S11: -0.1026 S12: 0.2767 S13: -0.1461 REMARK 3 S21: -0.0130 S22: 0.0162 S23: 0.1446 REMARK 3 S31: 0.2345 S32: -0.2265 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESID 150 THROUGH 285) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2727 17.9087 4.3176 REMARK 3 T TENSOR REMARK 3 T11: 0.5330 T22: 0.4624 REMARK 3 T33: 0.4431 T12: -0.0298 REMARK 3 T13: 0.0308 T23: 0.0370 REMARK 3 L TENSOR REMARK 3 L11: 1.4657 L22: 2.1405 REMARK 3 L33: 1.9174 L12: 0.8964 REMARK 3 L13: -0.7551 L23: -1.2654 REMARK 3 S TENSOR REMARK 3 S11: -0.0150 S12: 0.2808 S13: 0.2402 REMARK 3 S21: -0.2273 S22: 0.0664 S23: -0.0891 REMARK 3 S31: -0.1570 S32: -0.0330 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESID 1286 THROUGH 1286) REMARK 3 ORIGIN FOR THE GROUP (A): 35.8774 16.9470 18.0878 REMARK 3 T TENSOR REMARK 3 T11: 1.0442 T22: 0.9025 REMARK 3 T33: 0.7256 T12: -0.0938 REMARK 3 T13: -0.1065 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 0.2488 L22: 0.0847 REMARK 3 L33: 1.1132 L12: -0.0751 REMARK 3 L13: 0.4139 L23: 0.0376 REMARK 3 S TENSOR REMARK 3 S11: -0.0856 S12: -0.0213 S13: 0.0231 REMARK 3 S21: 0.1894 S22: -0.0006 S23: -0.0071 REMARK 3 S31: -0.0243 S32: -0.0761 S33: -0.0014 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TLS PARAMETERS WERE REFINED. SIDE REMARK 3 CHAINS OF THE FOLLOWING RESIDUES WERE TRUNCATED AT CB ATOMS. REMARK 3 CHAIN A, RESIDUES 1353, 1399, 1478, 1586, 1587. CHAIN B, REMARK 3 RESIDUES 15, 17, 169. THE FOLLOWING RESIDUES ARE DISORDERED. REMARK 3 CHAIN A, RESIDUES 1350 TO 1352, 1588 TO 1602, 1604 TO 1607. REMARK 3 CHAIN B, RESIDUES 13, 14. REMARK 4 REMARK 4 4CRV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1290059820. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45149 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 61.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.79000 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4CRU REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES (PH=6.0), 11% PEG6000, 0.05M REMARK 280 MG-CHLORIDE, 0.04M L-TRYPTOPHAN, PH 6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 77.03500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.40500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 77.03500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.40500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1350 REMARK 465 PRO A 1351 REMARK 465 HIS A 1352 REMARK 465 LEU A 1588 REMARK 465 SER A 1589 REMARK 465 GLN A 1590 REMARK 465 PRO A 1591 REMARK 465 THR A 1592 REMARK 465 GLY A 1593 REMARK 465 PHE A 1594 REMARK 465 LEU A 1595 REMARK 465 ALA A 1596 REMARK 465 GLN A 1597 REMARK 465 PRO A 1598 REMARK 465 MET A 1599 REMARK 465 LYS A 1600 REMARK 465 GLN A 1601 REMARK 465 ALA A 1602 REMARK 465 THR A 1605 REMARK 465 ASP A 1606 REMARK 465 ASP A 1607 REMARK 465 GLY B 13 REMARK 465 PRO B 14 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A1353 CG SD CE REMARK 470 ARG A1399 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1478 CG CD NE CZ NH1 NH2 REMARK 470 ASN A1586 CG OD1 ND2 REMARK 470 ASP A1587 CG OD1 OD2 REMARK 470 ALA A1604 CA C O CB REMARK 470 HIS B 15 CG ND1 CD2 CE1 NE2 REMARK 470 LEU B 17 CG CD1 CD2 REMARK 470 ARG B 169 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS B 252 16.70 -143.14 REMARK 500 ASP B 259 -159.55 -95.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRP B 1800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CRU RELATED DB: PDB REMARK 900 COMPLEX OF HUMAN CNOT9 AND CNOT1 INCLUDING ONE TRYPTOPHAN REMARK 900 RELATED ID: 2FV2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF HUMAN RCD-1 CONSERVED REGION REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SIX N-TERMINAL RESIDUES REMAIN FROM THE EXPRESSION TAG REMARK 999 OF CHAIN A. REMARK 999 THE SIX N-TERMINAL RESIDUES REMAIN FROM THE EXPRESSION TAG REMARK 999 OF CHAIN B. DBREF 4CRV A 1356 1607 UNP A5YKK6 CNOT1_HUMAN 1356 1607 DBREF 4CRV B 19 285 UNP Q92600 RCD1_HUMAN 19 285 SEQADV 4CRV GLY A 1350 UNP A5YKK6 EXPRESSION TAG SEQADV 4CRV PRO A 1351 UNP A5YKK6 EXPRESSION TAG SEQADV 4CRV HIS A 1352 UNP A5YKK6 EXPRESSION TAG SEQADV 4CRV MET A 1353 UNP A5YKK6 EXPRESSION TAG SEQADV 4CRV LEU A 1354 UNP A5YKK6 EXPRESSION TAG SEQADV 4CRV GLU A 1355 UNP A5YKK6 EXPRESSION TAG SEQADV 4CRV GLY B 13 UNP Q92600 EXPRESSION TAG SEQADV 4CRV PRO B 14 UNP Q92600 EXPRESSION TAG SEQADV 4CRV HIS B 15 UNP Q92600 EXPRESSION TAG SEQADV 4CRV MET B 16 UNP Q92600 EXPRESSION TAG SEQADV 4CRV LEU B 17 UNP Q92600 EXPRESSION TAG SEQADV 4CRV GLU B 18 UNP Q92600 EXPRESSION TAG SEQRES 1 A 258 GLY PRO HIS MET LEU GLU GLN TYR SER TYR HIS ASP ILE SEQRES 2 A 258 ASN VAL TYR SER LEU ALA GLY LEU ALA PRO HIS ILE THR SEQRES 3 A 258 LEU ASN PRO THR ILE PRO LEU PHE GLN ALA HIS PRO GLN SEQRES 4 A 258 LEU LYS GLN CYS VAL ARG GLN ALA ILE GLU ARG ALA VAL SEQRES 5 A 258 GLN GLU LEU VAL HIS PRO VAL VAL ASP ARG SER ILE LYS SEQRES 6 A 258 ILE ALA MET THR THR CYS GLU GLN ILE VAL ARG LYS ASP SEQRES 7 A 258 PHE ALA LEU ASP SER GLU GLU SER ARG MET ARG ILE ALA SEQRES 8 A 258 ALA HIS HIS MET MET ARG ASN LEU THR ALA GLY MET ALA SEQRES 9 A 258 MET ILE THR CYS ARG GLU PRO LEU LEU MET SER ILE SER SEQRES 10 A 258 THR ASN LEU LYS ASN SER PHE ALA SER ALA LEU ARG THR SEQRES 11 A 258 ALA SER PRO GLN GLN ARG GLU MET MET ASP GLN ALA ALA SEQRES 12 A 258 ALA GLN LEU ALA GLN ASP ASN CYS GLU LEU ALA CYS CYS SEQRES 13 A 258 PHE ILE GLN LYS THR ALA VAL GLU LYS ALA GLY PRO GLU SEQRES 14 A 258 MET ASP LYS ARG LEU ALA THR GLU PHE GLU LEU ARG LYS SEQRES 15 A 258 HIS ALA ARG GLN GLU GLY ARG ARG TYR CYS ASP PRO VAL SEQRES 16 A 258 VAL LEU THR TYR GLN ALA GLU ARG MET PRO GLU GLN ILE SEQRES 17 A 258 ARG LEU LYS VAL GLY GLY VAL ASP PRO LYS GLN LEU ALA SEQRES 18 A 258 VAL TYR GLU GLU PHE ALA ARG ASN VAL PRO GLY PHE LEU SEQRES 19 A 258 PRO THR ASN ASP LEU SER GLN PRO THR GLY PHE LEU ALA SEQRES 20 A 258 GLN PRO MET LYS GLN ALA TRP ALA THR ASP ASP SEQRES 1 B 273 GLY PRO HIS MET LEU GLU ARG GLU LYS ILE TYR GLN TRP SEQRES 2 B 273 ILE ASN GLU LEU SER SER PRO GLU THR ARG GLU ASN ALA SEQRES 3 B 273 LEU LEU GLU LEU SER LYS LYS ARG GLU SER VAL PRO ASP SEQRES 4 B 273 LEU ALA PRO MET LEU TRP HIS SER PHE GLY THR ILE ALA SEQRES 5 B 273 ALA LEU LEU GLN GLU ILE VAL ASN ILE TYR PRO SER ILE SEQRES 6 B 273 ASN PRO PRO THR LEU THR ALA HIS GLN SER ASN ARG VAL SEQRES 7 B 273 CYS ASN ALA LEU ALA LEU LEU GLN CYS VAL ALA SER HIS SEQRES 8 B 273 PRO GLU THR ARG SER ALA PHE LEU ALA ALA HIS ILE PRO SEQRES 9 B 273 LEU PHE LEU TYR PRO PHE LEU HIS THR VAL SER LYS THR SEQRES 10 B 273 ARG PRO PHE GLU TYR LEU ARG LEU THR SER LEU GLY VAL SEQRES 11 B 273 ILE GLY ALA LEU VAL LYS THR ASP GLU GLN GLU VAL ILE SEQRES 12 B 273 ASN PHE LEU LEU THR THR GLU ILE ILE PRO LEU CYS LEU SEQRES 13 B 273 ARG ILE MET GLU SER GLY SER GLU LEU SER LYS THR VAL SEQRES 14 B 273 ALA THR PHE ILE LEU GLN LYS ILE LEU LEU ASP ASP THR SEQRES 15 B 273 GLY LEU ALA TYR ILE CYS GLN THR TYR GLU ARG PHE SER SEQRES 16 B 273 HIS VAL ALA MET ILE LEU GLY LYS MET VAL LEU GLN LEU SEQRES 17 B 273 SER LYS GLU PRO SER ALA ARG LEU LEU LYS HIS VAL VAL SEQRES 18 B 273 ARG CYS TYR LEU ARG LEU SER ASP ASN PRO ARG ALA ARG SEQRES 19 B 273 GLU ALA LEU ARG GLN CYS LEU PRO ASP GLN LEU LYS ASP SEQRES 20 B 273 THR THR PHE ALA GLN VAL LEU LYS ASP ASP THR THR THR SEQRES 21 B 273 LYS ARG TRP LEU ALA GLN LEU VAL LYS ASN LEU GLN GLU HET TRP B1800 15 HET GOL B1801 6 HETNAM TRP TRYPTOPHAN HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 TRP C11 H12 N2 O2 FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *148(H2 O) HELIX 1 1 PRO A 1381 ALA A 1385 1 5 HELIX 2 2 VAL A 1393 ASP A 1427 1 35 HELIX 3 3 SER A 1435 ALA A 1476 1 42 HELIX 4 4 GLN A 1484 ARG A 1522 1 39 HELIX 5 5 ALA A 1524 ARG A 1534 1 11 HELIX 6 6 PRO A 1543 ARG A 1552 1 10 HELIX 7 7 ALA A 1570 ARG A 1577 1 8 HELIX 8 8 MET B 16 ASN B 27 1 12 HELIX 9 9 PRO B 32 LYS B 45 1 14 HELIX 10 10 LEU B 52 HIS B 58 1 7 HELIX 11 11 THR B 62 VAL B 71 1 10 HELIX 12 12 ALA B 84 SER B 102 1 19 HELIX 13 13 ARG B 107 ALA B 112 1 6 HELIX 14 14 TYR B 120 LEU B 123 1 4 HELIX 15 15 ARG B 130 VAL B 147 1 18 HELIX 16 16 GLN B 152 LEU B 159 1 8 HELIX 17 17 ILE B 163 SER B 173 1 11 HELIX 18 18 GLU B 176 LEU B 191 1 16 HELIX 19 19 ASP B 193 ILE B 199 1 7 HELIX 20 20 TYR B 203 LYS B 222 1 20 HELIX 21 21 ALA B 226 LEU B 239 1 14 HELIX 22 22 PRO B 243 CYS B 252 1 10 HELIX 23 23 ALA B 263 LEU B 266 1 4 HELIX 24 24 THR B 270 GLN B 284 1 15 CISPEP 1 ASN B 78 PRO B 79 0 -4.73 SITE 1 AC1 4 ILE B 164 TYR B 198 ARG B 205 HIS B 208 SITE 1 AC2 4 ARG B 46 ASN B 92 TYR B 134 HOH B2048 CRYST1 154.070 66.810 71.990 90.00 100.22 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006491 0.000000 0.001170 0.00000 SCALE2 0.000000 0.014968 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014115 0.00000