HEADER LYASE 02-MAR-14 4CRY TITLE DIRECT VISUALISATION OF STRAIN-INDUCED PROTEIN POST-TRANSLATIONAL TITLE 2 MODIFICATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE 1-DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPARTATE ALPHA-DECARBOXYLASE BETA CHAIN; COMPND 5 EC: 4.1.1.11; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: RESIDUES 1-24 AFTER CLEAVAGE OF POLYPEPTIDE CHAIN COMPND 8 BACKBONE BETWEEN RESIDUES G24 AND S25; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PANZ; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: ASPARTATE 1-DECARBOXYLASE; COMPND 15 CHAIN: G; COMPND 16 SYNONYM: ASPARTATE ALPHA-DECARBOXYLASE ALPHA CHAIN; COMPND 17 EC: 4.1.1.11; COMPND 18 ENGINEERED: YES; COMPND 19 MUTATION: YES; COMPND 20 OTHER_DETAILS: RESIDUES 25-126 AFTER CLEAVAGE OF POLYPEPTIDE CHAIN COMPND 21 BACKBONE BETWEEN RESIDUES G24 AND S25 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: MG1655 PAND-PANZ-(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PRSETA; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSETA-ADC(T57V); SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 12 ORGANISM_TAXID: 83333; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 15 EXPRESSION_SYSTEM_VARIANT: MG1655 PAND-PANZ-(DE3); SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_VECTOR: PRSETA; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PRSETA-ADC(T57V); SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 21 ORGANISM_TAXID: 83333; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 24 EXPRESSION_SYSTEM_VARIANT: MG1655 PAND-PANZ-(DE3); SOURCE 25 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 26 EXPRESSION_SYSTEM_VECTOR: PRSETA; SOURCE 27 EXPRESSION_SYSTEM_PLASMID: PRSETA-ADC(T57V) KEYWDS LYASE, COENZYME A, RADIATION DAMAGE, PANTOTHENATE EXPDTA X-RAY DIFFRACTION AUTHOR D.C.F.MONTEIRO,V.PATEL,C.P.BARTLETT,T.D.GRANT,S.NOZAKI,J.A.GOWDY, AUTHOR 2 E.H.SNELL,H.NIKI,A.R.PEARSON,M.E.WEBB REVDAT 2 20-DEC-23 4CRY 1 REMARK LINK REVDAT 1 25-MAR-15 4CRY 0 JRNL AUTH D.C.F.MONTEIRO,V.PATEL,C.P.BARTLETT,T.D.GRANT,S.NOZAKI, JRNL AUTH 2 J.A.GOWDY,E.H.SNELL,H.NIKI,A.R.PEARSON,M.E.WEBB JRNL TITL DIRECT VISUALISATION OF STRAIN-INDUCED PROTEIN JRNL TITL 2 POST-TRANSLATIONAL MODIFICATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 35579 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.150 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1910 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.65 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2180 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1997 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 124 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.55000 REMARK 3 B22 (A**2) : -3.55000 REMARK 3 B33 (A**2) : 7.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.013 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.013 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.916 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2192 ; 0.028 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2114 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2986 ; 2.704 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4840 ; 1.121 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 278 ; 7.099 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;34.324 ;22.870 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 384 ;15.058 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;22.950 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 325 ; 0.174 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2506 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 539 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1046 ; 2.915 ; 2.308 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1044 ; 2.848 ; 2.304 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1307 ; 3.978 ; 3.459 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1146 ; 4.243 ; 2.769 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.841 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.159 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THE BIOLOGICALLY RELEVANT HETEROOCTAMER IS FORMED BY REMARK 3 APPLICATION OF THE CRYSTALLOGRAPHIC 4-FOLD SYMMETRY AXIS TO THE REMARK 3 ASYMMETRIC UNIT CELL CONTENTS. EACH ASU CONTAINS ONE ADC REMARK 3 PROTOMER AND ONE PANZ PROTOMER. REMARK 4 REMARK 4 4CRY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1290059625. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37491 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 59.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4AZD REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) POLYETHYLENE GLYCOL (PEG) REMARK 280 3350, 0.1 M BIS-TRIS PROPANE PH 7.4, 0.2 M POTASSIUM THIOCYANATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.20000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.20000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.50000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.20000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.20000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.50000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 43.20000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 43.20000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 40.50000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 43.20000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 43.20000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 40.50000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 38940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -196.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 ARG A -15 REMARK 465 GLY A -14 REMARK 465 SER A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER B 128 REMARK 465 GLY B 129 REMARK 465 LEU B 130 REMARK 465 GLU B 131 REMARK 465 HIS B 132 REMARK 465 HIS B 133 REMARK 465 HIS B 134 REMARK 465 HIS B 135 REMARK 465 HIS B 136 REMARK 465 HIS B 137 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG B 75 OE2 GLU G 40 4555 1.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 9 CB LYS A 9 CG -0.167 REMARK 500 GLY A 24 N GLY A 24 CA 0.145 REMARK 500 SER B 57 CB SER B 57 OG -0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 3 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 12 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 GLY A 24 N - CA - C ANGL. DEV. = 16.5 DEGREES REMARK 500 ASP B 34 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 38 NE - CZ - NH1 ANGL. DEV. = 8.2 DEGREES REMARK 500 ARG B 38 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG B 47 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 47 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG B 69 NH1 - CZ - NH2 ANGL. DEV. = 7.9 DEGREES REMARK 500 ARG B 69 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 69 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG B 69 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 MET B 97 CG - SD - CE ANGL. DEV. = -10.9 DEGREES REMARK 500 ARG B 105 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 SER G 25 N - CA - CB ANGL. DEV. = 11.3 DEGREES REMARK 500 ASP G 29 CB - CG - OD2 ANGL. DEV. = -8.4 DEGREES REMARK 500 ASP G 34 CB - CG - OD2 ANGL. DEV. = -12.6 DEGREES REMARK 500 PHE G 55 CB - CG - CD1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG G 67 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG G 67 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG G 102 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 28 134.05 -5.39 REMARK 500 SER B 30 -24.22 116.97 REMARK 500 VAL G 57 -152.53 -142.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 23 GLY A 24 -44.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1129 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 72 O REMARK 620 2 ACO B1128 O5A 126.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACO B 1128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1129 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1130 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CRZ RELATED DB: PDB REMARK 900 DIRECT VISUALISATION OF STRAIN-INDUCED PROTEIN PROST- TRANSLATIONAL REMARK 900 MODIFICATION REMARK 900 RELATED ID: 4CS0 RELATED DB: PDB REMARK 900 DIRECT VISUALISATION OF STRAIN-INDUCED PROTEIN POST- TRANSLATIONAL REMARK 900 MODIFICATION REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINAL HEXAHIS-TAGGED ADC. RESIDUES 1-24 REMARK 999 RESIDUES 25-126, POINT MUTATION T57V. REMARK 999 C-TERMINAL HEXAHIS-TAGGED PANZ. DBREF 4CRY A 1 24 UNP P0A790 PAND_ECOLI 1 24 DBREF 4CRY B 1 127 UNP P37613 YHHK_ECOLI 1 127 DBREF 4CRY G 25 126 UNP P0A790 PAND_ECOLI 25 126 SEQADV 4CRY MET A -16 UNP P0A790 EXPRESSION TAG SEQADV 4CRY ARG A -15 UNP P0A790 EXPRESSION TAG SEQADV 4CRY GLY A -14 UNP P0A790 EXPRESSION TAG SEQADV 4CRY SER A -13 UNP P0A790 EXPRESSION TAG SEQADV 4CRY HIS A -12 UNP P0A790 EXPRESSION TAG SEQADV 4CRY HIS A -11 UNP P0A790 EXPRESSION TAG SEQADV 4CRY HIS A -10 UNP P0A790 EXPRESSION TAG SEQADV 4CRY HIS A -9 UNP P0A790 EXPRESSION TAG SEQADV 4CRY HIS A -8 UNP P0A790 EXPRESSION TAG SEQADV 4CRY HIS A -7 UNP P0A790 EXPRESSION TAG SEQADV 4CRY GLY A -6 UNP P0A790 EXPRESSION TAG SEQADV 4CRY LEU A -5 UNP P0A790 EXPRESSION TAG SEQADV 4CRY VAL A -4 UNP P0A790 EXPRESSION TAG SEQADV 4CRY PRO A -3 UNP P0A790 EXPRESSION TAG SEQADV 4CRY ARG A -2 UNP P0A790 EXPRESSION TAG SEQADV 4CRY GLY A -1 UNP P0A790 EXPRESSION TAG SEQADV 4CRY SER A 0 UNP P0A790 EXPRESSION TAG SEQADV 4CRY SER B 128 UNP P37613 EXPRESSION TAG SEQADV 4CRY GLY B 129 UNP P37613 EXPRESSION TAG SEQADV 4CRY LEU B 130 UNP P37613 EXPRESSION TAG SEQADV 4CRY GLU B 131 UNP P37613 EXPRESSION TAG SEQADV 4CRY HIS B 132 UNP P37613 EXPRESSION TAG SEQADV 4CRY HIS B 133 UNP P37613 EXPRESSION TAG SEQADV 4CRY HIS B 134 UNP P37613 EXPRESSION TAG SEQADV 4CRY HIS B 135 UNP P37613 EXPRESSION TAG SEQADV 4CRY HIS B 136 UNP P37613 EXPRESSION TAG SEQADV 4CRY HIS B 137 UNP P37613 EXPRESSION TAG SEQADV 4CRY VAL G 57 UNP P0A790 THR 57 ENGINEERED MUTATION SEQRES 1 A 41 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY LEU VAL SEQRES 2 A 41 PRO ARG GLY SER MET ILE ARG THR MET LEU GLN GLY LYS SEQRES 3 A 41 LEU HIS ARG VAL LYS VAL THR HIS ALA ASP LEU HIS TYR SEQRES 4 A 41 GLU GLY SEQRES 1 B 137 MET LYS LEU THR ILE ILE ARG LEU GLU LYS PHE SER ASP SEQRES 2 B 137 GLN ASP ARG ILE ASP LEU GLN LYS ILE TRP PRO GLU TYR SEQRES 3 B 137 SER PRO SER SER LEU GLN VAL ASP ASP ASN HIS ARG ILE SEQRES 4 B 137 TYR ALA ALA ARG PHE ASN GLU ARG LEU LEU ALA ALA VAL SEQRES 5 B 137 ARG VAL THR LEU SER GLY THR GLU GLY ALA LEU ASP SER SEQRES 6 B 137 LEU ARG VAL ARG GLU VAL THR ARG ARG ARG GLY VAL GLY SEQRES 7 B 137 GLN TYR LEU LEU GLU GLU VAL LEU ARG ASN ASN PRO GLY SEQRES 8 B 137 VAL SER CYS TRP TRP MET ALA ASP ALA GLY VAL GLU ASP SEQRES 9 B 137 ARG GLY VAL MET THR ALA PHE MET GLN ALA LEU GLY PHE SEQRES 10 B 137 THR ALA GLN GLN GLY GLY TRP GLU LYS CYS SER GLY LEU SEQRES 11 B 137 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 G 102 SER CYS ALA ILE ASP GLN ASP PHE LEU ASP ALA ALA GLY SEQRES 2 G 102 ILE LEU GLU ASN GLU ALA ILE ASP ILE TRP ASN VAL THR SEQRES 3 G 102 ASN GLY LYS ARG PHE SER VAL TYR ALA ILE ALA ALA GLU SEQRES 4 G 102 ARG GLY SER ARG ILE ILE SER VAL ASN GLY ALA ALA ALA SEQRES 5 G 102 HIS CSO ALA SER VAL GLY ASP ILE VAL ILE ILE ALA SER SEQRES 6 G 102 PHE VAL THR MET PRO ASP GLU GLU ALA ARG THR TRP ARG SEQRES 7 G 102 PRO ASN VAL ALA TYR PHE GLU GLY ASP ASN GLU MET LYS SEQRES 8 G 102 ARG THR ALA LYS ALA ILE PRO VAL GLN VAL ALA MODRES 4CRY CSO G 78 CYS S-HYDROXYCYSTEINE HET CSO G 78 7 HET ACO B1128 51 HET MG B1129 1 HET CL B1130 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM ACO ACETYL COENZYME *A HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 3 CSO C3 H7 N O3 S FORMUL 4 ACO C23 H38 N7 O17 P3 S FORMUL 5 MG MG 2+ FORMUL 6 CL CL 1- FORMUL 7 HOH *124(H2 O) HELIX 1 1 SER B 12 TRP B 23 1 12 HELIX 2 2 GLU B 70 ARG B 73 5 4 HELIX 3 3 GLY B 76 ASN B 88 1 13 HELIX 4 4 ASP B 104 LEU B 115 1 12 HELIX 5 5 GLN G 30 GLY G 37 1 8 HELIX 6 6 ALA G 74 CSO G 78 5 5 HELIX 7 7 ASP G 95 ARG G 99 1 5 SHEET 1 AA 9 HIS A 17 ASP A 19 0 SHEET 2 AA 9 ILE G 69 ASN G 72 1 O VAL G 71 N ASP A 19 SHEET 3 AA 9 CYS G 26 ASP G 29 -1 O ALA G 27 N SER G 70 SHEET 4 AA 9 ARG G 54 ALA G 62 1 O TYR G 58 N CYS G 26 SHEET 5 AA 9 ALA G 43 ASN G 48 -1 O ILE G 44 N VAL G 57 SHEET 6 AA 9 ILE G 84 PRO G 94 -1 O ILE G 86 N TRP G 47 SHEET 7 AA 9 ILE A 2 LYS A 14 -1 O ARG A 3 N MET G 93 SHEET 8 AA 9 ASN G 104 GLU G 109 1 O ASN G 104 N LYS A 9 SHEET 9 AA 9 GLU G 113 ALA G 118 -1 O GLU G 113 N GLU G 109 SHEET 1 BA 7 THR B 4 ARG B 7 0 SHEET 2 BA 7 HIS B 37 PHE B 44 -1 O ALA B 41 N ILE B 6 SHEET 3 BA 7 ARG B 47 SER B 57 -1 O ARG B 47 N PHE B 44 SHEET 4 BA 7 GLU B 60 VAL B 68 -1 O GLU B 60 N SER B 57 SHEET 5 BA 7 CYS B 94 ALA B 98 1 O CYS B 94 N GLY B 61 SHEET 6 BA 7 GLY B 123 LYS B 126 -1 O TRP B 124 N MET B 97 SHEET 7 BA 7 THR B 118 GLN B 120 -1 O THR B 118 N GLU B 125 SSBOND 1 CYS B 94 CYS B 127 1555 1555 2.05 LINK C HIS G 77 N CSO G 78 1555 1555 1.30 LINK C CSO G 78 N ALA G 79 1555 1555 1.33 LINK O THR B 72 MG MG B1129 1555 1555 2.68 LINK O5A ACO B1128 MG MG B1129 1555 1555 2.65 CISPEP 1 GLU A 23 GLY A 24 0 -5.41 CISPEP 2 PRO B 28 SER B 29 0 11.24 SITE 1 AC1 27 TRP B 23 GLU B 25 TYR B 26 SER B 65 SITE 2 AC1 27 LEU B 66 ARG B 67 VAL B 68 ARG B 73 SITE 3 AC1 27 ARG B 74 ARG B 75 GLY B 76 VAL B 77 SITE 4 AC1 27 GLY B 78 GLN B 79 GLY B 101 VAL B 102 SITE 5 AC1 27 GLU B 103 MET B 108 ALA B 110 PHE B 111 SITE 6 AC1 27 MG B1129 HOH B2032 HOH B2035 HOH B2038 SITE 7 AC1 27 HOH B2055 HOH B2056 ARG G 102 SITE 1 AC2 7 THR B 72 ARG B 73 ARG B 74 ARG B 75 SITE 2 AC2 7 GLY B 76 VAL B 77 ACO B1128 SITE 1 AC3 1 HOH A2004 CRYST1 86.400 86.400 81.000 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011574 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011574 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012346 0.00000