HEADER LYASE 02-MAR-14 4CS0 TITLE DIRECT VISUALISATION OF STRAIN-INDUCED PROTEIN POST-TRANSLATIONAL TITLE 2 MODIFICATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE 1-DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPARTATE ALPHA-DECARBOXYLASE; COMPND 5 EC: 4.1.1.11; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PANZ; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: MG1655 PAND-PANZ-(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PRSETA; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSETA-ADC(T57V); SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 12 ORGANISM_TAXID: 83333; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 15 EXPRESSION_SYSTEM_VARIANT: MG1655 PAND-PANZ-(DE3); SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_VECTOR: PET28A; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET28A-PANZ KEYWDS LYASE, COENZYME A, RADIATION DAMAGE, PANTOTHENATE EXPDTA X-RAY DIFFRACTION AUTHOR D.C.F.MONTEIRO,V.PATEL,C.P.BARTLETT,T.D.GRANT,S.NOZAKI,J.A.GOWDY, AUTHOR 2 E.H.SNELL,H.NIKI,A.R.PEARSON,M.E.WEBB REVDAT 4 20-DEC-23 4CS0 1 REMARK LINK REVDAT 3 28-JUN-17 4CS0 1 REMARK REVDAT 2 06-MAY-15 4CS0 1 JRNL REVDAT 1 25-MAR-15 4CS0 0 JRNL AUTH D.C.MONTEIRO,V.PATEL,C.P.BARTLETT,S.NOZAKI,T.D.GRANT, JRNL AUTH 2 J.A.GOWDY,G.S.THOMPSON,A.P.KALVERDA,E.H.SNELL,H.NIKI, JRNL AUTH 3 A.R.PEARSON,M.E.WEBB JRNL TITL THE STRUCTURE OF THE PAND/PANZ PROTEIN COMPLEX REVEALS JRNL TITL 2 NEGATIVE FEEDBACK REGULATION OF PANTOTHENATE BIOSYNTHESIS BY JRNL TITL 3 COENZYME A. JRNL REF CHEM.BIOL. V. 22 492 2015 JRNL REFN ISSN 1074-5521 JRNL PMID 25910242 JRNL DOI 10.1016/J.CHEMBIOL.2015.03.017 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 16351 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 871 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1238 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1995 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 62 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.50000 REMARK 3 B22 (A**2) : -4.50000 REMARK 3 B33 (A**2) : 8.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.041 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.039 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.912 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2113 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2020 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2864 ; 2.094 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4612 ; 0.910 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 258 ; 8.399 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 101 ;37.769 ;23.168 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 358 ;15.287 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;22.149 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 313 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2388 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 509 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1022 ; 2.616 ; 2.417 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1019 ; 2.593 ; 2.412 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1273 ; 4.023 ; 3.612 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1091 ; 3.336 ; 2.793 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THE BIOLOGICALLY RELEVANT HETEROOCTAMER IS FORMED BY REMARK 3 APPLICATION OF THE CRYSTALLOGRAPHIC 4-FOLD SYMMETRY AXIS TO THE REMARK 3 ASYMMETRIC UNIT CELL CONTENTS. EACH ASU CONTAINS ONE ADC REMARK 3 PROTOMER AND ONE PANZ PROTOMER. REMARK 4 REMARK 4 4CS0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1290059814. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU R-AXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17250 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 33.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4AZD REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) POLYETHYLENE GLYCOL (PEG) REMARK 280 3350, 0.1 M BIS-TRIS PROPANE PH 7.4, 0.2 M POTASSIUM THIOCYANATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.13500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.13500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.40500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.13500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.13500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.40500 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 43.13500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 43.13500 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 40.40500 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 43.13500 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 43.13500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 40.40500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2022 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 ARG A -15 REMARK 465 GLY A -14 REMARK 465 SER A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER B 128 REMARK 465 GLY B 129 REMARK 465 LEU B 130 REMARK 465 GLU B 131 REMARK 465 HIS B 132 REMARK 465 HIS B 133 REMARK 465 HIS B 134 REMARK 465 HIS B 135 REMARK 465 HIS B 136 REMARK 465 HIS B 137 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 30 N GLN A 30 CA -0.220 REMARK 500 GLN A 30 CA GLN A 30 CB 0.245 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 12 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 GLY A 24 N - CA - C ANGL. DEV. = 20.6 DEGREES REMARK 500 ARG A 116 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 75 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 123.01 -39.43 REMARK 500 ASN A 41 2.29 80.65 REMARK 500 THR A 57 -152.20 -154.76 REMARK 500 SER B 29 64.02 -111.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 23 GLY A 24 144.89 REMARK 500 GLY A 24 ALA A 25 -58.93 REMARK 500 SER B 29 SER B 30 149.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2022 DISTANCE = 9.17 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1129 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 72 O REMARK 620 2 ACO B1128 O5A 129.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACO B 1128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1129 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 1127 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CRY RELATED DB: PDB REMARK 900 DIRECT VISUALISATION OF STRAIN-INDUCED PROTEIN POST- TRANSLATIONAL REMARK 900 MODIFICATION REMARK 900 RELATED ID: 4CRZ RELATED DB: PDB REMARK 900 DIRECT VISUALISATION OF STRAIN-INDUCED PROTEIN PROST- TRANSLATIONAL REMARK 900 MODIFICATION REMARK 999 REMARK 999 SEQUENCE REMARK 999 HEXAHIS-TAGGED ADC. POINT MUTATION S25A. REMARK 999 C-TERMINAL HEXAHIS-TAGGED PANZ. DBREF 4CS0 A 1 126 UNP P0A790 PAND_ECOLI 1 126 DBREF 4CS0 B 1 127 UNP P37613 YHHK_ECOLI 1 127 SEQADV 4CS0 MET A -16 UNP P0A790 EXPRESSION TAG SEQADV 4CS0 ARG A -15 UNP P0A790 EXPRESSION TAG SEQADV 4CS0 GLY A -14 UNP P0A790 EXPRESSION TAG SEQADV 4CS0 SER A -13 UNP P0A790 EXPRESSION TAG SEQADV 4CS0 HIS A -12 UNP P0A790 EXPRESSION TAG SEQADV 4CS0 HIS A -11 UNP P0A790 EXPRESSION TAG SEQADV 4CS0 HIS A -10 UNP P0A790 EXPRESSION TAG SEQADV 4CS0 HIS A -9 UNP P0A790 EXPRESSION TAG SEQADV 4CS0 HIS A -8 UNP P0A790 EXPRESSION TAG SEQADV 4CS0 HIS A -7 UNP P0A790 EXPRESSION TAG SEQADV 4CS0 GLY A -6 UNP P0A790 EXPRESSION TAG SEQADV 4CS0 LEU A -5 UNP P0A790 EXPRESSION TAG SEQADV 4CS0 VAL A -4 UNP P0A790 EXPRESSION TAG SEQADV 4CS0 PRO A -3 UNP P0A790 EXPRESSION TAG SEQADV 4CS0 ARG A -2 UNP P0A790 EXPRESSION TAG SEQADV 4CS0 GLY A -1 UNP P0A790 EXPRESSION TAG SEQADV 4CS0 SER A 0 UNP P0A790 EXPRESSION TAG SEQADV 4CS0 ALA A 25 UNP P0A790 SER 25 ENGINEERED MUTATION SEQADV 4CS0 SER B 128 UNP P37613 EXPRESSION TAG SEQADV 4CS0 GLY B 129 UNP P37613 EXPRESSION TAG SEQADV 4CS0 LEU B 130 UNP P37613 EXPRESSION TAG SEQADV 4CS0 GLU B 131 UNP P37613 EXPRESSION TAG SEQADV 4CS0 HIS B 132 UNP P37613 EXPRESSION TAG SEQADV 4CS0 HIS B 133 UNP P37613 EXPRESSION TAG SEQADV 4CS0 HIS B 134 UNP P37613 EXPRESSION TAG SEQADV 4CS0 HIS B 135 UNP P37613 EXPRESSION TAG SEQADV 4CS0 HIS B 136 UNP P37613 EXPRESSION TAG SEQADV 4CS0 HIS B 137 UNP P37613 EXPRESSION TAG SEQRES 1 A 143 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY LEU VAL SEQRES 2 A 143 PRO ARG GLY SER MET ILE ARG THR MET LEU GLN GLY LYS SEQRES 3 A 143 LEU HIS ARG VAL LYS VAL THR HIS ALA ASP LEU HIS TYR SEQRES 4 A 143 GLU GLY ALA CYS ALA ILE ASP GLN ASP PHE LEU ASP ALA SEQRES 5 A 143 ALA GLY ILE LEU GLU ASN GLU ALA ILE ASP ILE TRP ASN SEQRES 6 A 143 VAL THR ASN GLY LYS ARG PHE SER THR TYR ALA ILE ALA SEQRES 7 A 143 ALA GLU ARG GLY SER ARG ILE ILE SER VAL ASN GLY ALA SEQRES 8 A 143 ALA ALA HIS CSO ALA SER VAL GLY ASP ILE VAL ILE ILE SEQRES 9 A 143 ALA SER PHE VAL THR MET PRO ASP GLU GLU ALA ARG THR SEQRES 10 A 143 TRP ARG PRO ASN VAL ALA TYR PHE GLU GLY ASP ASN GLU SEQRES 11 A 143 MET LYS ARG THR ALA LYS ALA ILE PRO VAL GLN VAL ALA SEQRES 1 B 137 MET LYS LEU THR ILE ILE ARG LEU GLU LYS PHE SER ASP SEQRES 2 B 137 GLN ASP ARG ILE ASP LEU GLN LYS ILE TRP PRO GLU TYR SEQRES 3 B 137 SER PRO SER SER LEU GLN VAL ASP ASP ASN HIS ARG ILE SEQRES 4 B 137 TYR ALA ALA ARG PHE ASN GLU ARG LEU LEU ALA ALA VAL SEQRES 5 B 137 ARG VAL THR LEU SER GLY THR GLU GLY ALA LEU ASP SER SEQRES 6 B 137 LEU ARG VAL ARG GLU VAL THR ARG ARG ARG GLY VAL GLY SEQRES 7 B 137 GLN TYR LEU LEU GLU GLU VAL LEU ARG ASN ASN PRO GLY SEQRES 8 B 137 VAL SER CYS TRP TRP MET ALA ASP ALA GLY VAL GLU ASP SEQRES 9 B 137 ARG GLY VAL MET THR ALA PHE MET GLN ALA LEU GLY PHE SEQRES 10 B 137 THR ALA GLN GLN GLY GLY TRP GLU LYS CYS SER GLY LEU SEQRES 11 B 137 GLU HIS HIS HIS HIS HIS HIS MODRES 4CS0 CSO A 78 CYS S-HYDROXYCYSTEINE HET CSO A 78 7 HET SCN A1127 3 HET ACO B1128 51 HET MG B1129 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM SCN THIOCYANATE ION HETNAM ACO ACETYL COENZYME *A HETNAM MG MAGNESIUM ION FORMUL 1 CSO C3 H7 N O3 S FORMUL 3 SCN C N S 1- FORMUL 4 ACO C23 H38 N7 O17 P3 S FORMUL 5 MG MG 2+ FORMUL 6 HOH *62(H2 O) HELIX 1 1 GLN A 30 GLY A 37 1 8 HELIX 2 2 ALA A 74 CSO A 78 5 5 HELIX 3 3 ASP A 95 THR A 100 1 6 HELIX 4 4 SER B 12 TRP B 23 1 12 HELIX 5 5 GLU B 70 ARG B 73 5 4 HELIX 6 6 GLY B 76 ASN B 88 1 13 HELIX 7 7 ASP B 104 LEU B 115 1 12 SHEET 1 AA 9 HIS A 17 ASP A 19 0 SHEET 2 AA 9 ILE A 69 ASN A 72 1 O VAL A 71 N ASP A 19 SHEET 3 AA 9 CYS A 26 ASP A 29 -1 O ALA A 27 N SER A 70 SHEET 4 AA 9 ARG A 54 ALA A 62 1 O TYR A 58 N CYS A 26 SHEET 5 AA 9 ALA A 43 ASN A 48 -1 O ILE A 44 N THR A 57 SHEET 6 AA 9 ILE A 84 PRO A 94 -1 O ILE A 86 N TRP A 47 SHEET 7 AA 9 ILE A 2 LYS A 14 -1 O ARG A 3 N MET A 93 SHEET 8 AA 9 ASN A 104 GLU A 109 1 O ASN A 104 N LYS A 9 SHEET 9 AA 9 GLU A 113 ALA A 118 -1 O GLU A 113 N GLU A 109 SHEET 1 BA 7 THR B 4 ARG B 7 0 SHEET 2 BA 7 HIS B 37 PHE B 44 -1 O ALA B 41 N ILE B 6 SHEET 3 BA 7 ARG B 47 SER B 57 -1 O ARG B 47 N PHE B 44 SHEET 4 BA 7 GLU B 60 VAL B 68 -1 O GLU B 60 N SER B 57 SHEET 5 BA 7 CYS B 94 ALA B 98 1 O CYS B 94 N GLY B 61 SHEET 6 BA 7 GLY B 123 LYS B 126 -1 O TRP B 124 N MET B 97 SHEET 7 BA 7 THR B 118 GLN B 120 -1 O THR B 118 N GLU B 125 SSBOND 1 CYS B 94 CYS B 127 1555 1555 2.05 LINK C HIS A 77 N CSO A 78 1555 1555 1.32 LINK C CSO A 78 N ALA A 79 1555 1555 1.32 LINK O THR B 72 MG MG B1129 1555 1555 2.68 LINK O5A ACO B1128 MG MG B1129 1555 1555 2.73 CISPEP 1 PRO B 28 SER B 29 0 5.01 SITE 1 AC1 23 ARG A 102 TRP B 23 GLU B 25 TYR B 26 SITE 2 AC1 23 SER B 65 LEU B 66 ARG B 67 VAL B 68 SITE 3 AC1 23 ARG B 73 ARG B 74 ARG B 75 GLY B 76 SITE 4 AC1 23 VAL B 77 GLY B 78 GLN B 79 VAL B 102 SITE 5 AC1 23 GLU B 103 VAL B 107 MET B 108 PHE B 111 SITE 6 AC1 23 MG B1129 HOH B2016 HOH B2021 SITE 1 AC2 7 THR B 72 ARG B 73 ARG B 74 ARG B 75 SITE 2 AC2 7 GLY B 76 VAL B 77 ACO B1128 SITE 1 AC3 7 ALA A 25 TRP A 47 ARG A 54 THR A 57 SITE 2 AC3 7 ALA A 74 ALA A 75 ILE A 86 CRYST1 86.270 86.270 80.810 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011592 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011592 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012375 0.00000