HEADER VIRAL PROTEIN 05-MAR-14 4CS9 TITLE CRYSTAL STRUCTURE OF THE ASYMMETRIC HUMAN METAPNEUMOVIRUS M2-1 TITLE 2 TETRAMER BOUND TO ADENOSINE MONOPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: M2-1; COMPND 3 CHAIN: A, B, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: M2-1; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN METAPNEUMOVIRUS; SOURCE 3 ORGANISM_TAXID: 162145; SOURCE 4 STRAIN: NL1-00 (A1); SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: POPINF; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HUMAN METAPNEUMOVIRUS; SOURCE 13 ORGANISM_TAXID: 162145; SOURCE 14 STRAIN: NL1-00 (A1); SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VARIANT: ROSETTA2; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: POPINF KEYWDS VIRAL PROTEIN, ANTITERMINATOR, TRANSCRIPTION ELONGATION, RNA-BINDING, KEYWDS 2 MODULAR PROTEIN, ASYMMETRIC TETRAMER EXPDTA X-RAY DIFFRACTION AUTHOR C.LEYRAT,M.RENNER,K.HARLOS,J.M.GRIMES REVDAT 4 20-DEC-23 4CS9 1 REMARK LINK REVDAT 3 25-JUN-14 4CS9 1 JRNL REVDAT 2 04-JUN-14 4CS9 1 JRNL REVDAT 1 28-MAY-14 4CS9 0 JRNL AUTH C.LEYRAT,M.RENNER,K.HARLOS,J.T.HUISKONEN,J.M.GRIMES JRNL TITL DRASTIC CHANGES IN CONFORMATIONAL DYNAMICS OF THE JRNL TITL 2 ANTITERMINATOR M2-1 REGULATE TRANSCRIPTION EFFICIENCY IN JRNL TITL 3 PNEUMOVIRINAE. JRNL REF ELIFE V. 3 02674 2014 JRNL REFN ESSN 2050-084X JRNL PMID 24842877 JRNL DOI 10.7554/ELIFE.02674 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 51637 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2626 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.06 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.79 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3247 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2452 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3071 REMARK 3 BIN R VALUE (WORKING SET) : 0.2435 REMARK 3 BIN FREE R VALUE : 0.2731 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.42 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 176 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5258 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 438 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.21780 REMARK 3 B22 (A**2) : -2.69410 REMARK 3 B33 (A**2) : 0.47630 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 7.61820 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.280 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.172 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.140 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.169 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.140 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5435 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7326 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2023 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 152 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 816 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5435 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 3 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 696 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : 16 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : 16 ; 1.000 ; HARMONIC REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6520 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.96 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.80 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.43 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 84.4108 0.0022 181.8558 REMARK 3 T TENSOR REMARK 3 T11: -0.0165 T22: 0.0039 REMARK 3 T33: -0.0239 T12: -0.0287 REMARK 3 T13: -0.0005 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 0.0542 L22: 0.3222 REMARK 3 L33: 0.5926 L12: 0.1771 REMARK 3 L13: -0.0418 L23: -0.3012 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: -0.0091 S13: -0.0044 REMARK 3 S21: -0.0201 S22: 0.0122 S23: -0.0134 REMARK 3 S31: 0.0357 S32: 0.0018 S33: -0.0170 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 104.6049 1.3463 218.9408 REMARK 3 T TENSOR REMARK 3 T11: 0.0536 T22: -0.0308 REMARK 3 T33: -0.0292 T12: -0.0422 REMARK 3 T13: -0.0008 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.4203 L22: 0.0000 REMARK 3 L33: 0.6406 L12: -0.2582 REMARK 3 L13: 0.3254 L23: -0.3010 REMARK 3 S TENSOR REMARK 3 S11: 0.0057 S12: -0.0386 S13: 0.0292 REMARK 3 S21: -0.0234 S22: 0.0101 S23: 0.0113 REMARK 3 S31: -0.0055 S32: -0.0040 S33: -0.0158 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 101.1553 11.1740 177.8410 REMARK 3 T TENSOR REMARK 3 T11: -0.0703 T22: 0.0485 REMARK 3 T33: 0.0007 T12: -0.0605 REMARK 3 T13: -0.0044 T23: -0.0390 REMARK 3 L TENSOR REMARK 3 L11: 0.0063 L22: 0.3211 REMARK 3 L33: 0.9861 L12: -0.1779 REMARK 3 L13: -0.0810 L23: 0.0302 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: 0.0779 S13: -0.0109 REMARK 3 S21: 0.0812 S22: 0.0035 S23: -0.0388 REMARK 3 S31: -0.0300 S32: 0.0174 S33: 0.0041 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): 88.1646 0.3464 201.6364 REMARK 3 T TENSOR REMARK 3 T11: 0.0231 T22: -0.0285 REMARK 3 T33: -0.0231 T12: -0.0431 REMARK 3 T13: -0.0606 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 0.5438 L22: 0.1183 REMARK 3 L33: 0.7735 L12: -0.0188 REMARK 3 L13: 0.4638 L23: -0.4927 REMARK 3 S TENSOR REMARK 3 S11: 0.0175 S12: 0.0458 S13: -0.0506 REMARK 3 S21: 0.0490 S22: -0.0202 S23: -0.0267 REMARK 3 S31: 0.0005 S32: -0.0462 S33: 0.0027 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE RIBOSE AND PHOSPHATE OF AMP4 WERE REMARK 3 MODELED STEREOCHEMICALLY REMARK 4 REMARK 4 4CS9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1290059890. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.968620 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51659 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 49.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.800 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.84000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4CS8 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28 % W/V POLYETHYLENE GLYCOL REMARK 280 MONOMETHYL ETHER 2000, 0.100 M BIS-TRIS PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.80500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 53 REMARK 465 ASP A 54 REMARK 465 GLY A 55 REMARK 465 LEU A 56 REMARK 465 SER A 57 REMARK 465 ILE A 58 REMARK 465 ILE A 59 REMARK 465 SER A 60 REMARK 465 GLY A 61 REMARK 465 ALA A 62 REMARK 465 ASN A 171 REMARK 465 ASP A 172 REMARK 465 SER A 173 REMARK 465 SER A 174 REMARK 465 TYR A 175 REMARK 465 ALA A 176 REMARK 465 LEU A 177 REMARK 465 GLN A 178 REMARK 465 ASP A 179 REMARK 465 SER A 180 REMARK 465 GLU A 181 REMARK 465 SER A 182 REMARK 465 THR A 183 REMARK 465 ASN A 184 REMARK 465 GLN A 185 REMARK 465 VAL A 186 REMARK 465 GLN A 187 REMARK 465 GLY B -1 REMARK 465 PRO B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 54 REMARK 465 GLY B 55 REMARK 465 LEU B 56 REMARK 465 GLU B 170 REMARK 465 ASN B 171 REMARK 465 ASP B 172 REMARK 465 SER B 173 REMARK 465 SER B 174 REMARK 465 TYR B 175 REMARK 465 ALA B 176 REMARK 465 LEU B 177 REMARK 465 GLN B 178 REMARK 465 ASP B 179 REMARK 465 SER B 180 REMARK 465 GLU B 181 REMARK 465 SER B 182 REMARK 465 THR B 183 REMARK 465 ASN B 184 REMARK 465 GLN B 185 REMARK 465 VAL B 186 REMARK 465 GLN B 187 REMARK 465 GLY C -1 REMARK 465 PRO C 0 REMARK 465 MET C 1 REMARK 465 GLY C 55 REMARK 465 LEU C 56 REMARK 465 SER C 57 REMARK 465 ILE C 58 REMARK 465 ILE C 59 REMARK 465 SER C 60 REMARK 465 SER C 173 REMARK 465 SER C 174 REMARK 465 TYR C 175 REMARK 465 ALA C 176 REMARK 465 LEU C 177 REMARK 465 GLN C 178 REMARK 465 ASP C 179 REMARK 465 SER C 180 REMARK 465 GLU C 181 REMARK 465 SER C 182 REMARK 465 THR C 183 REMARK 465 ASN C 184 REMARK 465 GLN C 185 REMARK 465 VAL C 186 REMARK 465 GLN C 187 REMARK 465 GLY E -1 REMARK 465 PRO E 0 REMARK 465 MET E 1 REMARK 465 SER E 2 REMARK 465 ALA E 53 REMARK 465 ASP E 54 REMARK 465 GLY E 55 REMARK 465 LEU E 56 REMARK 465 SER E 57 REMARK 465 ILE E 58 REMARK 465 ILE E 59 REMARK 465 SER E 60 REMARK 465 GLY E 61 REMARK 465 ALA E 62 REMARK 465 GLY E 63 REMARK 465 GLN E 178 REMARK 465 ASP E 179 REMARK 465 SER E 180 REMARK 465 GLU E 181 REMARK 465 SER E 182 REMARK 465 THR E 183 REMARK 465 ASN E 184 REMARK 465 GLN E 185 REMARK 465 VAL E 186 REMARK 465 GLN E 187 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB ALA C 62 O HOH C 2047 1.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET B 134 SD MET B 134 CE -0.349 REMARK 500 MET C 134 SD MET C 134 CE -0.346 REMARK 500 MET E 134 SD MET E 134 CE -0.339 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 20 -12.47 99.00 REMARK 500 THR A 139 72.23 -118.75 REMARK 500 ALA A 169 129.96 -35.80 REMARK 500 ASP B 85 31.06 71.31 REMARK 500 LYS B 117 55.73 -144.21 REMARK 500 ARG C 64 -46.46 60.39 REMARK 500 ASN C 171 -60.01 -130.18 REMARK 500 LYS E 4 -69.24 -95.57 REMARK 500 SER E 121 -54.55 58.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2009 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH B2041 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH E2011 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH E2075 DISTANCE = 8.69 ANGSTROMS REMARK 525 HOH E2076 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH E2077 DISTANCE = 8.21 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1171 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 7 SG REMARK 620 2 CYS A 15 SG 107.5 REMARK 620 3 CYS A 21 SG 113.1 115.9 REMARK 620 4 HIS A 25 NE2 107.7 101.3 110.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1170 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 7 SG REMARK 620 2 CYS B 15 SG 109.3 REMARK 620 3 CYS B 21 SG 111.5 113.9 REMARK 620 4 HIS B 25 NE2 107.0 105.7 109.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1173 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 7 SG REMARK 620 2 CYS C 15 SG 110.2 REMARK 620 3 CYS C 21 SG 111.0 112.7 REMARK 620 4 HIS C 25 NE2 108.9 108.6 105.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E1178 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 7 SG REMARK 620 2 CYS E 15 SG 108.7 REMARK 620 3 CYS E 21 SG 111.9 113.9 REMARK 620 4 HIS E 25 NE2 104.5 112.1 105.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 1178 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1170 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 1173 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP C 1174 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 1171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 1172 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP C 1175 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CS7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ASYMMETRIC HUMAN METAPNEUMOVIRUS M2-1 REMARK 900 TETRAMER, FORM 1 REMARK 900 RELATED ID: 4CS8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ASYMMETRIC HUMAN METAPNEUMOVIRUS M2-1 REMARK 900 TETRAMER, FORM 2 REMARK 900 RELATED ID: 4CSA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ASYMMETRIC HUMAN METAPNEUMOVIRUS M2-1 REMARK 900 TETRAMER BOUND TO A DNA 4-MER DBREF 4CS9 A 1 187 UNP Q8QN58 Q8QN58_9MONO 1 187 DBREF 4CS9 B 1 187 UNP Q8QN58 Q8QN58_9MONO 1 187 DBREF 4CS9 C 1 187 UNP Q8QN58 Q8QN58_9MONO 1 187 DBREF 4CS9 E 1 187 UNP Q8QN58 Q8QN58_9MONO 1 187 SEQADV 4CS9 GLY A -1 UNP Q8QN58 EXPRESSION TAG SEQADV 4CS9 PRO A 0 UNP Q8QN58 EXPRESSION TAG SEQADV 4CS9 GLY B -1 UNP Q8QN58 EXPRESSION TAG SEQADV 4CS9 PRO B 0 UNP Q8QN58 EXPRESSION TAG SEQADV 4CS9 GLY C -1 UNP Q8QN58 EXPRESSION TAG SEQADV 4CS9 PRO C 0 UNP Q8QN58 EXPRESSION TAG SEQADV 4CS9 ASP C 49 UNP Q8QN58 ASN 49 CONFLICT SEQADV 4CS9 GLY E -1 UNP Q8QN58 EXPRESSION TAG SEQADV 4CS9 PRO E 0 UNP Q8QN58 EXPRESSION TAG SEQRES 1 A 189 GLY PRO MET SER ARG LYS ALA PRO CYS LYS TYR GLU VAL SEQRES 2 A 189 ARG GLY LYS CYS ASN ARG GLY SER GLU CYS LYS PHE ASN SEQRES 3 A 189 HIS ASN TYR TRP SER TRP PRO ASP ARG TYR LEU LEU ILE SEQRES 4 A 189 ARG SER ASN TYR LEU LEU ASN GLN LEU LEU ARG ASN THR SEQRES 5 A 189 ASP ARG ALA ASP GLY LEU SER ILE ILE SER GLY ALA GLY SEQRES 6 A 189 ARG GLU ASP ARG THR GLN ASP PHE VAL LEU GLY SER THR SEQRES 7 A 189 ASN VAL VAL GLN GLY TYR ILE ASP ASP ASN GLN SER ILE SEQRES 8 A 189 THR LYS ALA ALA ALA CYS TYR SER LEU HIS ASN ILE ILE SEQRES 9 A 189 LYS GLN LEU GLN GLU VAL GLU VAL ARG GLN ALA ARG ASP SEQRES 10 A 189 ASN LYS LEU SER ASP SER LYS HIS VAL ALA LEU HIS ASN SEQRES 11 A 189 LEU VAL LEU SER TYR MET GLU MET SER LYS THR PRO ALA SEQRES 12 A 189 SER LEU ILE ASN ASN LEU LYS ARG LEU PRO ARG GLU LYS SEQRES 13 A 189 LEU LYS LYS LEU ALA LYS LEU ILE ILE ASP LEU SER ALA SEQRES 14 A 189 GLY ALA GLU ASN ASP SER SER TYR ALA LEU GLN ASP SER SEQRES 15 A 189 GLU SER THR ASN GLN VAL GLN SEQRES 1 B 189 GLY PRO MET SER ARG LYS ALA PRO CYS LYS TYR GLU VAL SEQRES 2 B 189 ARG GLY LYS CYS ASN ARG GLY SER GLU CYS LYS PHE ASN SEQRES 3 B 189 HIS ASN TYR TRP SER TRP PRO ASP ARG TYR LEU LEU ILE SEQRES 4 B 189 ARG SER ASN TYR LEU LEU ASN GLN LEU LEU ARG ASN THR SEQRES 5 B 189 ASP ARG ALA ASP GLY LEU SER ILE ILE SER GLY ALA GLY SEQRES 6 B 189 ARG GLU ASP ARG THR GLN ASP PHE VAL LEU GLY SER THR SEQRES 7 B 189 ASN VAL VAL GLN GLY TYR ILE ASP ASP ASN GLN SER ILE SEQRES 8 B 189 THR LYS ALA ALA ALA CYS TYR SER LEU HIS ASN ILE ILE SEQRES 9 B 189 LYS GLN LEU GLN GLU VAL GLU VAL ARG GLN ALA ARG ASP SEQRES 10 B 189 ASN LYS LEU SER ASP SER LYS HIS VAL ALA LEU HIS ASN SEQRES 11 B 189 LEU VAL LEU SER TYR MET GLU MET SER LYS THR PRO ALA SEQRES 12 B 189 SER LEU ILE ASN ASN LEU LYS ARG LEU PRO ARG GLU LYS SEQRES 13 B 189 LEU LYS LYS LEU ALA LYS LEU ILE ILE ASP LEU SER ALA SEQRES 14 B 189 GLY ALA GLU ASN ASP SER SER TYR ALA LEU GLN ASP SER SEQRES 15 B 189 GLU SER THR ASN GLN VAL GLN SEQRES 1 C 189 GLY PRO MET SER ARG LYS ALA PRO CYS LYS TYR GLU VAL SEQRES 2 C 189 ARG GLY LYS CYS ASN ARG GLY SER GLU CYS LYS PHE ASN SEQRES 3 C 189 HIS ASN TYR TRP SER TRP PRO ASP ARG TYR LEU LEU ILE SEQRES 4 C 189 ARG SER ASN TYR LEU LEU ASN GLN LEU LEU ARG ASP THR SEQRES 5 C 189 ASP ARG ALA ASP GLY LEU SER ILE ILE SER GLY ALA GLY SEQRES 6 C 189 ARG GLU ASP ARG THR GLN ASP PHE VAL LEU GLY SER THR SEQRES 7 C 189 ASN VAL VAL GLN GLY TYR ILE ASP ASP ASN GLN SER ILE SEQRES 8 C 189 THR LYS ALA ALA ALA CYS TYR SER LEU HIS ASN ILE ILE SEQRES 9 C 189 LYS GLN LEU GLN GLU VAL GLU VAL ARG GLN ALA ARG ASP SEQRES 10 C 189 ASN LYS LEU SER ASP SER LYS HIS VAL ALA LEU HIS ASN SEQRES 11 C 189 LEU VAL LEU SER TYR MET GLU MET SER LYS THR PRO ALA SEQRES 12 C 189 SER LEU ILE ASN ASN LEU LYS ARG LEU PRO ARG GLU LYS SEQRES 13 C 189 LEU LYS LYS LEU ALA LYS LEU ILE ILE ASP LEU SER ALA SEQRES 14 C 189 GLY ALA GLU ASN ASP SER SER TYR ALA LEU GLN ASP SER SEQRES 15 C 189 GLU SER THR ASN GLN VAL GLN SEQRES 1 E 189 GLY PRO MET SER ARG LYS ALA PRO CYS LYS TYR GLU VAL SEQRES 2 E 189 ARG GLY LYS CYS ASN ARG GLY SER GLU CYS LYS PHE ASN SEQRES 3 E 189 HIS ASN TYR TRP SER TRP PRO ASP ARG TYR LEU LEU ILE SEQRES 4 E 189 ARG SER ASN TYR LEU LEU ASN GLN LEU LEU ARG ASN THR SEQRES 5 E 189 ASP ARG ALA ASP GLY LEU SER ILE ILE SER GLY ALA GLY SEQRES 6 E 189 ARG GLU ASP ARG THR GLN ASP PHE VAL LEU GLY SER THR SEQRES 7 E 189 ASN VAL VAL GLN GLY TYR ILE ASP ASP ASN GLN SER ILE SEQRES 8 E 189 THR LYS ALA ALA ALA CYS TYR SER LEU HIS ASN ILE ILE SEQRES 9 E 189 LYS GLN LEU GLN GLU VAL GLU VAL ARG GLN ALA ARG ASP SEQRES 10 E 189 ASN LYS LEU SER ASP SER LYS HIS VAL ALA LEU HIS ASN SEQRES 11 E 189 LEU VAL LEU SER TYR MET GLU MET SER LYS THR PRO ALA SEQRES 12 E 189 SER LEU ILE ASN ASN LEU LYS ARG LEU PRO ARG GLU LYS SEQRES 13 E 189 LEU LYS LYS LEU ALA LYS LEU ILE ILE ASP LEU SER ALA SEQRES 14 E 189 GLY ALA GLU ASN ASP SER SER TYR ALA LEU GLN ASP SER SEQRES 15 E 189 GLU SER THR ASN GLN VAL GLN HET ZN A1171 1 HET AMP A1172 23 HET ZN B1170 1 HET AMP B1171 23 HET ZN C1173 1 HET AMP C1174 23 HET AMP C1175 23 HET ZN E1178 1 HETNAM ZN ZINC ION HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 5 ZN 4(ZN 2+) FORMUL 6 AMP 4(C10 H14 N5 O7 P) FORMUL 13 HOH *438(H2 O) HELIX 1 1 CYS A 7 ARG A 12 1 6 HELIX 2 2 ASN A 26 TRP A 30 5 5 HELIX 3 3 PRO A 31 ASP A 51 1 21 HELIX 4 4 GLY A 63 GLY A 74 1 12 HELIX 5 5 GLY A 74 ASP A 84 1 11 HELIX 6 6 THR A 90 LYS A 103 1 14 HELIX 7 7 GLN A 106 ASP A 115 1 10 HELIX 8 8 ASP A 120 SER A 137 1 18 HELIX 9 9 THR A 139 LEU A 150 1 12 HELIX 10 10 PRO A 151 ALA A 167 1 17 HELIX 11 11 CYS B 7 ARG B 12 1 6 HELIX 12 12 ARG B 17 CYS B 21 5 5 HELIX 13 13 ASN B 26 TRP B 30 5 5 HELIX 14 14 PRO B 31 ASP B 51 1 21 HELIX 15 15 GLY B 63 GLY B 74 1 12 HELIX 16 16 GLY B 74 ASP B 84 1 11 HELIX 17 17 THR B 90 LEU B 105 1 16 HELIX 18 18 GLN B 106 ASN B 116 1 11 HELIX 19 19 ASP B 120 SER B 137 1 18 HELIX 20 20 THR B 139 LEU B 150 1 12 HELIX 21 21 PRO B 151 ALA B 167 1 17 HELIX 22 22 CYS C 7 ARG C 12 1 6 HELIX 23 23 ARG C 17 CYS C 21 5 5 HELIX 24 24 ASN C 26 TRP C 30 5 5 HELIX 25 25 PRO C 31 ASP C 51 1 21 HELIX 26 26 ARG C 64 GLY C 74 1 11 HELIX 27 27 GLY C 74 ASP C 84 1 11 HELIX 28 28 THR C 90 LYS C 103 1 14 HELIX 29 29 GLN C 106 ASN C 116 1 11 HELIX 30 30 ASP C 120 SER C 137 1 18 HELIX 31 31 THR C 139 LEU C 150 1 12 HELIX 32 32 PRO C 151 SER C 166 1 16 HELIX 33 33 CYS E 7 ARG E 12 1 6 HELIX 34 34 ARG E 17 CYS E 21 5 5 HELIX 35 35 ASN E 26 TRP E 30 5 5 HELIX 36 36 PRO E 31 THR E 50 1 20 HELIX 37 37 ARG E 64 GLY E 74 1 11 HELIX 38 38 GLY E 74 ASP E 84 1 11 HELIX 39 39 THR E 90 LYS E 103 1 14 HELIX 40 40 GLN E 106 ASN E 116 1 11 HELIX 41 41 SER E 121 SER E 137 1 17 HELIX 42 42 THR E 139 ARG E 149 1 11 HELIX 43 43 PRO E 151 SER E 166 1 16 LINK SG CYS A 7 ZN ZN A1171 1555 1555 2.33 LINK SG CYS A 15 ZN ZN A1171 1555 1555 2.15 LINK SG CYS A 21 ZN ZN A1171 1555 1555 2.30 LINK NE2 HIS A 25 ZN ZN A1171 1555 1555 1.99 LINK SG CYS B 7 ZN ZN B1170 1555 1555 2.27 LINK SG CYS B 15 ZN ZN B1170 1555 1555 2.22 LINK SG CYS B 21 ZN ZN B1170 1555 1555 2.25 LINK NE2 HIS B 25 ZN ZN B1170 1555 1555 2.04 LINK SG CYS C 7 ZN ZN C1173 1555 1555 2.33 LINK SG CYS C 15 ZN ZN C1173 1555 1555 2.25 LINK SG CYS C 21 ZN ZN C1173 1555 1555 2.35 LINK NE2 HIS C 25 ZN ZN C1173 1555 1555 1.92 LINK SG CYS E 7 ZN ZN E1178 1555 1555 2.33 LINK SG CYS E 15 ZN ZN E1178 1555 1555 2.15 LINK SG CYS E 21 ZN ZN E1178 1555 1555 2.35 LINK NE2 HIS E 25 ZN ZN E1178 1555 1555 2.01 SITE 1 AC1 4 CYS E 7 CYS E 15 CYS E 21 HIS E 25 SITE 1 AC2 4 CYS A 7 CYS A 15 CYS A 21 HIS A 25 SITE 1 AC3 4 CYS B 7 CYS B 15 CYS B 21 HIS B 25 SITE 1 AC4 4 CYS C 7 CYS C 15 CYS C 21 HIS C 25 SITE 1 AC5 9 CYS C 7 LYS C 8 TYR C 9 PHE C 23 SITE 2 AC5 9 HOH C2019 HOH C2132 HOH C2133 HOH C2134 SITE 3 AC5 9 HOH C2135 SITE 1 AC6 10 PRO B 6 CYS B 7 LYS B 8 ARG B 17 SITE 2 AC6 10 PHE B 23 ASN B 145 ARG B 149 HOH B2143 SITE 3 AC6 10 ASP E 172 TYR E 175 SITE 1 AC7 6 PRO A 6 CYS A 7 LYS A 8 TYR A 9 SITE 2 AC7 6 PHE A 23 HOH A2082 SITE 1 AC8 5 TYR C 9 LYS C 14 CYS C 15 ASN C 16 SITE 2 AC8 5 ARG C 17 CRYST1 50.050 93.610 85.600 90.00 95.76 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019980 0.000000 0.002015 0.00000 SCALE2 0.000000 0.010683 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011742 0.00000