HEADER TRANSFERASE 11-MAR-14 4CT1 TITLE HUMAN PDK1-PKCZETA KINASE CHIMERA IN COMPLEX WITH ALLOSTERIC COMPOUND TITLE 2 PS315 BOUND TO THE PIF-POCKET COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 50-359; COMPND 5 SYNONYM: HPDK1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC KEYWDS TRANSFERASE, ALLOSTERIC REGULATION, ALLOSTERIC SITE, PHOSPHORYLATION, KEYWDS 2 AGC PROTEIN KINASE, CHIMERIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.O.SCHULZE,H.ZHANG,L.A.LOPEZ-GARCIA,R.M.BIONDI REVDAT 4 20-DEC-23 4CT1 1 REMARK LINK REVDAT 3 02-JUL-14 4CT1 1 JRNL REVDAT 2 04-JUN-14 4CT1 1 ATOM REVDAT 1 28-MAY-14 4CT1 0 JRNL AUTH H.ZHANG,S.NEIMANIS,L.A.LOPEZ-GARCIA,J.M.ARENCIBIA,S.AMON, JRNL AUTH 2 A.STROBA,S.ZEUZEM,E.PROSCHAK,H.STARK,A.F.BAUER,K.BUSSCHOTS, JRNL AUTH 3 T.J.JORGENSEN,M.ENGEL,J.O.SCHULZE,R.M.BIONDI JRNL TITL MOLECULAR MECHANISM OF REGULATION OF THE ATYPICAL PROTEIN JRNL TITL 2 KINASE C BY N-TERMINAL DOMAINS AND AN ALLOSTERIC SMALL JRNL TITL 3 COMPOUND. JRNL REF CHEM.BIOL. V. 21 754 2014 JRNL REFN ISSN 1074-5521 JRNL PMID 24836908 JRNL DOI 10.1016/J.CHEMBIOL.2014.04.007 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 26465 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1323 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.2653 - 3.8447 1.00 2894 152 0.1459 0.1697 REMARK 3 2 3.8447 - 3.0531 1.00 2820 148 0.1491 0.1898 REMARK 3 3 3.0531 - 2.6676 1.00 2779 147 0.1674 0.2017 REMARK 3 4 2.6676 - 2.4239 1.00 2811 147 0.1810 0.2716 REMARK 3 5 2.4239 - 2.2503 1.00 2773 146 0.1798 0.2422 REMARK 3 6 2.2503 - 2.1177 1.00 2783 147 0.1796 0.2530 REMARK 3 7 2.1177 - 2.0116 1.00 2778 146 0.1957 0.2369 REMARK 3 8 2.0116 - 1.9241 0.99 2725 144 0.2111 0.2697 REMARK 3 9 1.9241 - 1.8501 0.99 2779 146 0.2446 0.2785 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2455 REMARK 3 ANGLE : 1.433 3358 REMARK 3 CHIRALITY : 0.052 374 REMARK 3 PLANARITY : 0.008 422 REMARK 3 DIHEDRAL : 13.360 916 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 76 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0297 24.9244 -40.0911 REMARK 3 T TENSOR REMARK 3 T11: 0.2071 T22: 0.2357 REMARK 3 T33: 0.1700 T12: 0.0375 REMARK 3 T13: -0.0169 T23: 0.0379 REMARK 3 L TENSOR REMARK 3 L11: 3.9789 L22: 5.3668 REMARK 3 L33: 6.0512 L12: 0.0979 REMARK 3 L13: -0.0096 L23: -0.1037 REMARK 3 S TENSOR REMARK 3 S11: 0.0412 S12: 0.0589 S13: 0.3563 REMARK 3 S21: -0.2589 S22: -0.0699 S23: 0.3920 REMARK 3 S31: -0.1423 S32: -0.1764 S33: -0.0279 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 95 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2942 24.5468 -30.9859 REMARK 3 T TENSOR REMARK 3 T11: 0.1792 T22: 0.1788 REMARK 3 T33: 0.1377 T12: 0.0246 REMARK 3 T13: -0.0144 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.3567 L22: 0.8668 REMARK 3 L33: 2.0310 L12: 0.0201 REMARK 3 L13: -0.5101 L23: -0.3103 REMARK 3 S TENSOR REMARK 3 S11: 0.0706 S12: 0.2063 S13: 0.1577 REMARK 3 S21: -0.1432 S22: -0.0999 S23: 0.0286 REMARK 3 S31: -0.2346 S32: 0.0130 S33: 0.0245 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 179 THROUGH 236 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7096 21.2376 -17.5382 REMARK 3 T TENSOR REMARK 3 T11: 0.1057 T22: 0.0961 REMARK 3 T33: 0.1076 T12: -0.0161 REMARK 3 T13: -0.0047 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 1.1984 L22: 1.3960 REMARK 3 L33: 1.4997 L12: -0.1142 REMARK 3 L13: -0.1324 L23: -0.0210 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: 0.0614 S13: 0.0323 REMARK 3 S21: -0.0496 S22: 0.0031 S23: -0.1777 REMARK 3 S31: -0.0315 S32: 0.0319 S33: 0.0300 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 237 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.5868 30.4237 -17.2806 REMARK 3 T TENSOR REMARK 3 T11: 0.1466 T22: 0.1328 REMARK 3 T33: 0.2235 T12: 0.0114 REMARK 3 T13: -0.0074 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 3.0206 L22: 3.6962 REMARK 3 L33: 1.5768 L12: -0.0739 REMARK 3 L13: 0.4544 L23: -0.2599 REMARK 3 S TENSOR REMARK 3 S11: -0.0313 S12: 0.0620 S13: 0.3800 REMARK 3 S21: -0.1686 S22: 0.0186 S23: 0.1684 REMARK 3 S31: -0.2335 S32: -0.1276 S33: 0.0742 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 261 THROUGH 327 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.7551 15.9782 -13.5991 REMARK 3 T TENSOR REMARK 3 T11: 0.0990 T22: 0.1183 REMARK 3 T33: 0.1381 T12: -0.0076 REMARK 3 T13: -0.0041 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 2.0238 L22: 2.3836 REMARK 3 L33: 1.4508 L12: -0.4502 REMARK 3 L13: 0.4304 L23: -0.1465 REMARK 3 S TENSOR REMARK 3 S11: 0.0143 S12: -0.0333 S13: -0.1199 REMARK 3 S21: 0.0447 S22: -0.0121 S23: 0.3773 REMARK 3 S31: 0.0532 S32: -0.1128 S33: -0.0394 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 328 THROUGH 359 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6656 13.4279 -7.3487 REMARK 3 T TENSOR REMARK 3 T11: 0.2005 T22: 0.1432 REMARK 3 T33: 0.1379 T12: 0.0195 REMARK 3 T13: -0.0386 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 2.6445 L22: 2.7829 REMARK 3 L33: 2.0185 L12: -0.6035 REMARK 3 L13: -0.0453 L23: 0.1519 REMARK 3 S TENSOR REMARK 3 S11: -0.0499 S12: -0.0918 S13: -0.0792 REMARK 3 S21: 0.3357 S22: 0.0571 S23: -0.2885 REMARK 3 S31: 0.1233 S32: 0.2067 S33: -0.0293 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CT1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1290059960. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26467 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 26.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.72000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3HRC REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M NA CITRATE, 0.1 M HEPES PH 7.5, REMARK 280 10 MM DTT REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.30000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.30500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.30000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.30500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 49 REMARK 465 ALA A 50 REMARK 465 MET A 51 REMARK 465 ASP A 52 REMARK 465 GLY A 53 REMARK 465 THR A 54 REMARK 465 ALA A 55 REMARK 465 ALA A 56 REMARK 465 GLU A 57 REMARK 465 PRO A 58 REMARK 465 ARG A 59 REMARK 465 PRO A 60 REMARK 465 GLY A 61 REMARK 465 ALA A 62 REMARK 465 GLY A 63 REMARK 465 SER A 64 REMARK 465 LEU A 65 REMARK 465 GLN A 66 REMARK 465 HIS A 67 REMARK 465 ALA A 68 REMARK 465 GLN A 69 REMARK 465 PRO A 70 REMARK 465 PRO A 71 REMARK 465 PRO A 72 REMARK 465 GLN A 73 REMARK 465 PRO A 74 REMARK 465 ARG A 75 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 76 CE NZ REMARK 470 ARG A 78 CD NE CZ NH1 NH2 REMARK 470 LYS A 83 NZ REMARK 470 ARG A 100 NE CZ NH1 NH2 REMARK 470 LYS A 111 NZ REMARK 470 GLU A 114 CD OE1 OE2 REMARK 470 ARG A 116 CD NE CZ NH1 NH2 REMARK 470 HIS A 119 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 ASN A 122 CG OD1 ND2 REMARK 470 LYS A 123 CE NZ REMARK 470 TYR A 126 CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 128 CD OE1 NE2 REMARK 470 LYS A 163 CE NZ REMARK 470 ARG A 172 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 173 CD CE NZ REMARK 470 LYS A 235 CD CE NZ REMARK 470 GLN A 247 OE1 NE2 REMARK 470 LYS A 257 CD CE NZ REMARK 470 LYS A 296 NZ REMARK 470 GLU A 303 CD OE1 OE2 REMARK 470 LYS A 304 CD CE NZ REMARK 470 LYS A 323 CE NZ REMARK 470 LYS A 337 NZ REMARK 470 GLU A 348 CG CD OE1 OE2 REMARK 470 ASN A 349 CG OD1 ND2 REMARK 470 GLN A 352 CD OE1 NE2 REMARK 470 LYS A 357 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C LYS A 304 H PHE A 305 1.49 REMARK 500 HZ3 LYS A 228 O HOH A 2034 1.56 REMARK 500 OE1 GLU A 101 O HOH A 2014 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 93 25.84 -145.24 REMARK 500 ASP A 151 -158.23 -130.80 REMARK 500 ARG A 204 -8.97 79.43 REMARK 500 ASP A 205 45.88 -140.01 REMARK 500 ASP A 223 72.08 72.43 REMARK 500 PRO A 302 -178.09 -65.78 REMARK 500 ASN A 349 36.39 38.32 REMARK 500 ASN A 349 55.31 -113.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2024 DISTANCE = 7.22 ANGSTROMS REMARK 525 HOH A2025 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A2095 DISTANCE = 5.97 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 31S A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTD A 800 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CT2 RELATED DB: PDB REMARK 900 HUMAN PDK1-PKCZETA KINASE CHIMERA DBREF 4CT1 A 50 359 UNP O15530 PDPK1_HUMAN 50 359 SEQADV 4CT1 GLY A 49 UNP O15530 EXPRESSION TAG SEQADV 4CT1 VAL A 113 UNP O15530 LEU 113 ENGINEERED MUTATION SEQADV 4CT1 VAL A 118 UNP O15530 ILE 118 ENGINEERED MUTATION SEQADV 4CT1 HIS A 119 UNP O15530 ILE 119 ENGINEERED MUTATION SEQADV 4CT1 ILE A 124 UNP O15530 VAL 124 ENGINEERED MUTATION SEQADV 4CT1 GLN A 128 UNP O15530 THR 128 ENGINEERED MUTATION SEQADV 4CT1 LYS A 131 UNP O15530 ARG 131 ENGINEERED MUTATION SEQADV 4CT1 CYS A 148 UNP O15530 THR 148 ENGINEERED MUTATION SEQADV 4CT1 LEU A 157 UNP O15530 PHE 157 ENGINEERED MUTATION SEQADV 4CT1 GLY A 288 UNP O15530 TYR 288 ENGINEERED MUTATION SEQADV 4CT1 ALA A 292 UNP O15530 GLN 292 ENGINEERED MUTATION SEQRES 1 A 311 GLY ALA MET ASP GLY THR ALA ALA GLU PRO ARG PRO GLY SEQRES 2 A 311 ALA GLY SER LEU GLN HIS ALA GLN PRO PRO PRO GLN PRO SEQRES 3 A 311 ARG LYS LYS ARG PRO GLU ASP PHE LYS PHE GLY LYS ILE SEQRES 4 A 311 LEU GLY GLU GLY SER PHE SER THR VAL VAL LEU ALA ARG SEQRES 5 A 311 GLU LEU ALA THR SER ARG GLU TYR ALA ILE LYS ILE VAL SEQRES 6 A 311 GLU LYS ARG HIS VAL HIS LYS GLU ASN LYS ILE PRO TYR SEQRES 7 A 311 VAL GLN ARG GLU LYS ASP VAL MET SER ARG LEU ASP HIS SEQRES 8 A 311 PRO PHE PHE VAL LYS LEU TYR PHE CYS PHE GLN ASP ASP SEQRES 9 A 311 GLU LYS LEU TYR LEU GLY LEU SER TYR ALA LYS ASN GLY SEQRES 10 A 311 GLU LEU LEU LYS TYR ILE ARG LYS ILE GLY SER PHE ASP SEQRES 11 A 311 GLU THR CYS THR ARG PHE TYR THR ALA GLU ILE VAL SER SEQRES 12 A 311 ALA LEU GLU TYR LEU HIS GLY LYS GLY ILE ILE HIS ARG SEQRES 13 A 311 ASP LEU LYS PRO GLU ASN ILE LEU LEU ASN GLU ASP MET SEQRES 14 A 311 HIS ILE GLN ILE THR ASP PHE GLY THR ALA LYS VAL LEU SEQRES 15 A 311 SER PRO GLU SER LYS GLN ALA ARG ALA ASN SEP PHE VAL SEQRES 16 A 311 GLY THR ALA GLN TYR VAL SER PRO GLU LEU LEU THR GLU SEQRES 17 A 311 LYS SER ALA CYS LYS SER SER ASP LEU TRP ALA LEU GLY SEQRES 18 A 311 CYS ILE ILE TYR GLN LEU VAL ALA GLY LEU PRO PRO PHE SEQRES 19 A 311 ARG ALA GLY ASN GLU GLY LEU ILE PHE ALA LYS ILE ILE SEQRES 20 A 311 LYS LEU GLU TYR ASP PHE PRO GLU LYS PHE PHE PRO LYS SEQRES 21 A 311 ALA ARG ASP LEU VAL GLU LYS LEU LEU VAL LEU ASP ALA SEQRES 22 A 311 THR LYS ARG LEU GLY CYS GLU GLU MET GLU GLY TYR GLY SEQRES 23 A 311 PRO LEU LYS ALA HIS PRO PHE PHE GLU SER VAL THR TRP SEQRES 24 A 311 GLU ASN LEU HIS GLN GLN THR PRO PRO LYS LEU THR MODRES 4CT1 SEP A 241 SER PHOSPHOSERINE HET SEP A 241 14 HET ATP A 500 42 HET 31S A 600 44 HET DMS A 700 10 HET DTD A 800 16 HETNAM SEP PHOSPHOSERINE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM 31S (2Z)-3-(BIPHENYL-4-YL)-5-(4-CHLOROPHENYL)PENT-2-ENOIC HETNAM 2 31S ACID HETNAM DMS DIMETHYL SULFOXIDE HETNAM DTD DITHIANE DIOL HETSYN SEP PHOSPHONOSERINE HETSYN 31S PS315 FORMUL 1 SEP C3 H8 N O6 P FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 31S C23 H19 CL O2 FORMUL 4 DMS C2 H6 O S FORMUL 5 DTD C4 H8 O2 S2 FORMUL 6 HOH *233(H2 O) HELIX 1 1 LYS A 115 GLU A 121 1 7 HELIX 2 2 LYS A 123 SER A 135 1 13 HELIX 3 3 LEU A 167 ILE A 174 1 8 HELIX 4 4 GLU A 179 LYS A 199 1 21 HELIX 5 5 PRO A 251 GLU A 256 1 6 HELIX 6 6 SER A 262 ALA A 277 1 16 HELIX 7 7 GLU A 287 ILE A 295 1 9 HELIX 8 8 PRO A 307 LEU A 316 1 10 HELIX 9 9 TYR A 333 ALA A 338 1 6 SHEET 1 AA 5 PHE A 82 GLY A 91 0 SHEET 2 AA 5 SER A 94 GLU A 101 -1 O VAL A 96 N LEU A 88 SHEET 3 AA 5 ARG A 106 GLU A 114 -1 O TYR A 108 N ALA A 99 SHEET 4 AA 5 LYS A 154 LEU A 159 -1 O LEU A 155 N VAL A 113 SHEET 5 AA 5 PHE A 147 ASP A 151 -1 O PHE A 147 N GLY A 158 SHEET 1 AB 3 GLY A 165 GLU A 166 0 SHEET 2 AB 3 ILE A 211 ASN A 214 -1 N LEU A 213 O GLY A 165 SHEET 3 AB 3 HIS A 218 ILE A 221 -1 O GLN A 220 N LEU A 212 SHEET 1 AC 2 ILE A 201 ILE A 202 0 SHEET 2 AC 2 LYS A 228 VAL A 229 -1 O LYS A 228 N ILE A 202 LINK C ASN A 240 N SEP A 241 1555 1555 1.32 LINK C SEP A 241 N PHE A 242 1555 1555 1.33 SITE 1 AC1 14 GLY A 89 GLY A 91 SER A 92 SER A 94 SITE 2 AC1 14 VAL A 96 SER A 160 ALA A 162 GLU A 166 SITE 3 AC1 14 LEU A 212 HOH A2011 HOH A2125 HOH A2128 SITE 4 AC1 14 HOH A2132 HOH A2232 SITE 1 AC2 8 VAL A 127 GLU A 130 LYS A 131 CYS A 148 SITE 2 AC2 8 PHE A 149 GLN A 150 LEU A 155 LEU A 157 SITE 1 AC3 9 THR A 104 SER A 105 HIS A 139 PHE A 141 SITE 2 AC3 9 SER A 191 TRP A 347 ASN A 349 LEU A 350 SITE 3 AC3 9 HIS A 351 SITE 1 AC4 6 PHE A 242 VAL A 243 GLY A 244 ALA A 246 SITE 2 AC4 6 ARG A 283 PHE A 291 CRYST1 148.600 44.610 48.000 90.00 101.84 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006729 0.000000 0.001411 0.00000 SCALE2 0.000000 0.022416 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021286 0.00000