HEADER TRANSFERASE 11-MAR-14 4CT2 TITLE HUMAN PDK1-PKCZETA KINASE CHIMERA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 50-359; COMPND 5 SYNONYM: HPDK1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC KEYWDS TRANSFERASE, ALLOSTERIC REGULATION, ALLOSTERIC SITE, PHOSPHORYLATION, KEYWDS 2 AGC PROTEIN KINASE, CHIMERIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.O.SCHULZE,H.ZHANG,L.A.LOPEZ-GARCIA,R.M.BIONDI REVDAT 3 20-DEC-23 4CT2 1 REMARK LINK REVDAT 2 02-JUL-14 4CT2 1 JRNL REVDAT 1 28-MAY-14 4CT2 0 JRNL AUTH H.ZHANG,S.NEIMANIS,L.A.LOPEZ-GARCIA,J.M.ARENCIBIA,S.AMON, JRNL AUTH 2 A.STROBA,S.ZEUZEM,E.PROSCHAK,H.STARK,A.F.BAUER,K.BUSSCHOTS, JRNL AUTH 3 T.J.JORGENSEN,M.ENGEL,J.O.SCHULZE,R.M.BIONDI JRNL TITL MOLECULAR MECHANISM OF REGULATION OF THE ATYPICAL PROTEIN JRNL TITL 2 KINASE C BY N-TERMINAL DOMAINS AND AN ALLOSTERIC SMALL JRNL TITL 3 COMPOUND. JRNL REF CHEM.BIOL. V. 21 754 2014 JRNL REFN ISSN 1074-5521 JRNL PMID 24836908 JRNL DOI 10.1016/J.CHEMBIOL.2014.04.007 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 84010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4201 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.3151 - 3.8800 0.99 2763 145 0.1802 0.1809 REMARK 3 2 3.8800 - 3.0812 1.00 2716 143 0.1733 0.2108 REMARK 3 3 3.0812 - 2.6922 1.00 2698 142 0.1900 0.2093 REMARK 3 4 2.6922 - 2.4462 1.00 2680 141 0.1887 0.2223 REMARK 3 5 2.4462 - 2.2710 0.99 2658 140 0.1894 0.2318 REMARK 3 6 2.2710 - 2.1371 0.99 2668 141 0.1906 0.2232 REMARK 3 7 2.1371 - 2.0302 1.00 2645 139 0.1915 0.2076 REMARK 3 8 2.0302 - 1.9418 0.99 2669 140 0.1995 0.2593 REMARK 3 9 1.9418 - 1.8671 1.00 2662 140 0.2088 0.2646 REMARK 3 10 1.8671 - 1.8027 0.99 2645 140 0.2058 0.2247 REMARK 3 11 1.8027 - 1.7463 0.99 2668 140 0.1900 0.2500 REMARK 3 12 1.7463 - 1.6964 0.99 2638 139 0.1959 0.2625 REMARK 3 13 1.6964 - 1.6518 1.00 2645 139 0.2024 0.2589 REMARK 3 14 1.6518 - 1.6115 1.00 2674 141 0.2025 0.2892 REMARK 3 15 1.6115 - 1.5748 1.00 2634 138 0.2005 0.2515 REMARK 3 16 1.5748 - 1.5413 1.00 2621 138 0.2030 0.2607 REMARK 3 17 1.5413 - 1.5105 1.00 2665 141 0.2025 0.2473 REMARK 3 18 1.5105 - 1.4820 1.00 2634 138 0.2155 0.2647 REMARK 3 19 1.4820 - 1.4555 1.00 2685 142 0.2164 0.2786 REMARK 3 20 1.4555 - 1.4309 1.00 2661 140 0.2251 0.2991 REMARK 3 21 1.4309 - 1.4078 1.00 2634 139 0.2280 0.2680 REMARK 3 22 1.4078 - 1.3861 1.00 2655 139 0.2197 0.2938 REMARK 3 23 1.3861 - 1.3657 1.00 2662 140 0.2253 0.2717 REMARK 3 24 1.3657 - 1.3465 1.00 2664 141 0.2278 0.2807 REMARK 3 25 1.3465 - 1.3283 1.00 2620 138 0.2293 0.2522 REMARK 3 26 1.3283 - 1.3111 1.00 2656 139 0.2535 0.3205 REMARK 3 27 1.3111 - 1.2947 1.00 2670 141 0.2594 0.2938 REMARK 3 28 1.2947 - 1.2791 1.00 2606 137 0.2617 0.3206 REMARK 3 29 1.2791 - 1.2642 1.00 2686 142 0.2844 0.3690 REMARK 3 30 1.2642 - 1.2500 1.00 2627 138 0.2856 0.3563 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2346 REMARK 3 ANGLE : 1.457 3201 REMARK 3 CHIRALITY : 0.082 359 REMARK 3 PLANARITY : 0.009 402 REMARK 3 DIHEDRAL : 13.037 878 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 118-123 ARE DISORDERED REMARK 4 REMARK 4 4CT2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1290059913. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84028 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 26.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3HRC REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M NA CITRATE, 0.1 M HEPES PH 7.5, REMARK 280 10 MM DTT REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 73.77500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.31500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 73.77500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.31500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 49 REMARK 465 ALA A 50 REMARK 465 MET A 51 REMARK 465 ASP A 52 REMARK 465 GLY A 53 REMARK 465 THR A 54 REMARK 465 ALA A 55 REMARK 465 ALA A 56 REMARK 465 GLU A 57 REMARK 465 PRO A 58 REMARK 465 ARG A 59 REMARK 465 PRO A 60 REMARK 465 GLY A 61 REMARK 465 ALA A 62 REMARK 465 GLY A 63 REMARK 465 SER A 64 REMARK 465 LEU A 65 REMARK 465 GLN A 66 REMARK 465 HIS A 67 REMARK 465 ALA A 68 REMARK 465 GLN A 69 REMARK 465 PRO A 70 REMARK 465 PRO A 71 REMARK 465 PRO A 72 REMARK 465 GLN A 73 REMARK 465 PRO A 74 REMARK 465 HIS A 119 REMARK 465 LYS A 120 REMARK 465 GLU A 121 REMARK 465 ASN A 122 REMARK 465 LYS A 123 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 75 N CA O CB CG CD NE REMARK 470 ARG A 75 CZ NH1 NH2 REMARK 470 LYS A 76 CE NZ REMARK 470 ARG A 78 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 83 CD CE NZ REMARK 470 PHE A 93 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 116 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 117 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 118 CA C O CB CG1 CG2 REMARK 470 ILE A 124 CG1 CG2 CD1 REMARK 470 TYR A 126 CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 128 CD OE1 NE2 REMARK 470 ARG A 172 CZ NH1 NH2 REMARK 470 LYS A 173 CG CD CE NZ REMARK 470 LYS A 199 CE NZ REMARK 470 LYS A 235 NZ REMARK 470 LYS A 261 NZ REMARK 470 LYS A 296 NZ REMARK 470 GLU A 303 CG CD OE1 OE2 REMARK 470 LYS A 304 CD CE NZ REMARK 470 LYS A 323 CE NZ REMARK 470 GLU A 348 CG CD OE1 OE2 REMARK 470 ASN A 349 CG OD1 ND2 REMARK 470 GLN A 352 CG CD OE1 NE2 REMARK 470 LYS A 357 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 108 O HOH A 2020 1.53 REMARK 500 O LYS A 304 O HOH A 2231 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 76 126.24 -30.08 REMARK 500 PHE A 93 39.86 -148.89 REMARK 500 HIS A 117 -77.24 -69.26 REMARK 500 ASP A 138 68.27 -160.03 REMARK 500 ARG A 204 -9.78 77.37 REMARK 500 ASP A 223 70.07 70.54 REMARK 500 ASP A 223 69.06 71.76 REMARK 500 GLU A 348 -77.98 -48.42 REMARK 500 ASN A 349 58.50 -108.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2032 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A2135 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH A2311 DISTANCE = 7.71 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 700 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 223 OD2 REMARK 620 2 ASP A 223 OD2 5.8 REMARK 620 3 ATP A 500 O2B 81.5 86.5 REMARK 620 4 ATP A 500 O1G 140.7 141.0 74.5 REMARK 620 5 HOH A2172 O 68.7 67.1 128.0 149.8 REMARK 620 6 HOH A2173 O 102.0 96.3 154.3 87.9 75.6 REMARK 620 7 HOH A2176 O 66.3 64.6 75.9 77.7 123.6 82.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTD A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 700 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CT1 RELATED DB: PDB REMARK 900 HUMAN PDK1-PKCZETA KINASE CHIMERA IN COMPLEX WITH ALLOSTERIC REMARK 900 COMPOUND PS315 BOUND TO THE PIF-POCKET DBREF 4CT2 A 50 359 UNP O15530 PDPK1_HUMAN 50 359 SEQADV 4CT2 GLY A 49 UNP O15530 EXPRESSION TAG SEQADV 4CT2 VAL A 113 UNP O15530 LEU 113 ENGINEERED MUTATION SEQADV 4CT2 VAL A 118 UNP O15530 ILE 118 ENGINEERED MUTATION SEQADV 4CT2 HIS A 119 UNP O15530 ILE 119 ENGINEERED MUTATION SEQADV 4CT2 ILE A 124 UNP O15530 VAL 124 ENGINEERED MUTATION SEQADV 4CT2 GLN A 128 UNP O15530 THR 128 ENGINEERED MUTATION SEQADV 4CT2 LYS A 131 UNP O15530 ARG 131 ENGINEERED MUTATION SEQADV 4CT2 CYS A 148 UNP O15530 THR 148 ENGINEERED MUTATION SEQADV 4CT2 LEU A 157 UNP O15530 PHE 157 ENGINEERED MUTATION SEQADV 4CT2 GLY A 288 UNP O15530 TYR 288 ENGINEERED MUTATION SEQADV 4CT2 ALA A 292 UNP O15530 GLN 292 ENGINEERED MUTATION SEQRES 1 A 311 GLY ALA MET ASP GLY THR ALA ALA GLU PRO ARG PRO GLY SEQRES 2 A 311 ALA GLY SER LEU GLN HIS ALA GLN PRO PRO PRO GLN PRO SEQRES 3 A 311 ARG LYS LYS ARG PRO GLU ASP PHE LYS PHE GLY LYS ILE SEQRES 4 A 311 LEU GLY GLU GLY SER PHE SER THR VAL VAL LEU ALA ARG SEQRES 5 A 311 GLU LEU ALA THR SER ARG GLU TYR ALA ILE LYS ILE VAL SEQRES 6 A 311 GLU LYS ARG HIS VAL HIS LYS GLU ASN LYS ILE PRO TYR SEQRES 7 A 311 VAL GLN ARG GLU LYS ASP VAL MET SER ARG LEU ASP HIS SEQRES 8 A 311 PRO PHE PHE VAL LYS LEU TYR PHE CYS PHE GLN ASP ASP SEQRES 9 A 311 GLU LYS LEU TYR LEU GLY LEU SER TYR ALA LYS ASN GLY SEQRES 10 A 311 GLU LEU LEU LYS TYR ILE ARG LYS ILE GLY SER PHE ASP SEQRES 11 A 311 GLU THR CYS THR ARG PHE TYR THR ALA GLU ILE VAL SER SEQRES 12 A 311 ALA LEU GLU TYR LEU HIS GLY LYS GLY ILE ILE HIS ARG SEQRES 13 A 311 ASP LEU LYS PRO GLU ASN ILE LEU LEU ASN GLU ASP MET SEQRES 14 A 311 HIS ILE GLN ILE THR ASP PHE GLY THR ALA LYS VAL LEU SEQRES 15 A 311 SER PRO GLU SER LYS GLN ALA ARG ALA ASN SEP PHE VAL SEQRES 16 A 311 GLY THR ALA GLN TYR VAL SER PRO GLU LEU LEU THR GLU SEQRES 17 A 311 LYS SER ALA CYS LYS SER SER ASP LEU TRP ALA LEU GLY SEQRES 18 A 311 CYS ILE ILE TYR GLN LEU VAL ALA GLY LEU PRO PRO PHE SEQRES 19 A 311 ARG ALA GLY ASN GLU GLY LEU ILE PHE ALA LYS ILE ILE SEQRES 20 A 311 LYS LEU GLU TYR ASP PHE PRO GLU LYS PHE PHE PRO LYS SEQRES 21 A 311 ALA ARG ASP LEU VAL GLU LYS LEU LEU VAL LEU ASP ALA SEQRES 22 A 311 THR LYS ARG LEU GLY CYS GLU GLU MET GLU GLY TYR GLY SEQRES 23 A 311 PRO LEU LYS ALA HIS PRO PHE PHE GLU SER VAL THR TRP SEQRES 24 A 311 GLU ASN LEU HIS GLN GLN THR PRO PRO LYS LEU THR MODRES 4CT2 SEP A 241 SER PHOSPHOSERINE HET SEP A 241 14 HET ATP A 500 42 HET DTD A 600 16 HET NA A 700 1 HETNAM SEP PHOSPHOSERINE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM DTD DITHIANE DIOL HETNAM NA SODIUM ION HETSYN SEP PHOSPHONOSERINE FORMUL 1 SEP C3 H8 N O6 P FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 DTD C4 H8 O2 S2 FORMUL 4 NA NA 1+ FORMUL 5 HOH *311(H2 O) HELIX 1 2 ILE A 124 SER A 135 1 12 HELIX 2 3 LEU A 167 ILE A 174 1 8 HELIX 3 4 GLU A 179 LYS A 199 1 21 HELIX 4 7 PRO A 251 GLU A 256 1 6 HELIX 5 8 SER A 262 ALA A 277 1 16 HELIX 6 9 GLU A 287 ILE A 295 1 9 HELIX 7 10 PRO A 307 LEU A 316 1 10 HELIX 8 13 TYR A 333 ALA A 338 1 6 SHEET 1 AA 5 PHE A 82 GLY A 91 0 SHEET 2 AA 5 SER A 94 GLU A 101 -1 O VAL A 96 N LEU A 88 SHEET 3 AA 5 ARG A 106 GLU A 114 -1 O TYR A 108 N ALA A 99 SHEET 4 AA 5 LYS A 154 LEU A 159 -1 O LEU A 155 N VAL A 113 SHEET 5 AA 5 PHE A 147 ASP A 151 -1 O PHE A 147 N GLY A 158 SHEET 1 AB 3 GLY A 165 GLU A 166 0 SHEET 2 AB 3 ILE A 211 ASN A 214 -1 N LEU A 213 O GLY A 165 SHEET 3 AB 3 HIS A 218 ILE A 221 -1 O GLN A 220 N LEU A 212 SHEET 1 AC 2 ILE A 201 ILE A 202 0 SHEET 2 AC 2 LYS A 228 VAL A 229 -1 O LYS A 228 N ILE A 202 LINK C ASN A 240 N SEP A 241 1555 1555 1.33 LINK C SEP A 241 N PHE A 242 1555 1555 1.33 LINK OD2BASP A 223 NA NA A 700 1555 1555 2.46 LINK OD2AASP A 223 NA NA A 700 1555 1555 2.49 LINK O2B ATP A 500 NA NA A 700 1555 1555 2.75 LINK O1G ATP A 500 NA NA A 700 1555 1555 2.35 LINK NA NA A 700 O HOH A2172 1555 1555 3.12 LINK NA NA A 700 O HOH A2173 1555 1555 2.57 LINK NA NA A 700 O HOH A2176 1555 1555 3.19 SITE 1 AC1 20 GLY A 89 GLY A 91 SER A 92 SER A 94 SITE 2 AC1 20 VAL A 96 ALA A 109 LYS A 111 SER A 160 SITE 3 AC1 20 ALA A 162 GLU A 166 LEU A 212 ASP A 223 SITE 4 AC1 20 NA A 700 HOH A2016 HOH A2034 HOH A2174 SITE 5 AC1 20 HOH A2176 HOH A2182 HOH A2308 HOH A2309 SITE 1 AC2 6 PHE A 242 VAL A 243 GLY A 244 ALA A 246 SITE 2 AC2 6 ARG A 283 GLU A 287 SITE 1 AC3 3 ASP A 223 ATP A 500 HOH A2173 CRYST1 147.550 44.630 47.610 90.00 100.96 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006777 0.000000 0.001312 0.00000 SCALE2 0.000000 0.022406 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021394 0.00000