HEADER BIOSYNTHETIC PROTEIN 12-MAR-14 4CT9 TITLE COMPETENCE OR DAMAGE-INDUCIBLE PROTEIN CINA FROM THERMUS THERMOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CINA-LIKE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CINA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS BIOSYNTHETIC PROTEIN, COMPETENCE, DAMAGE, NAD RECYCLING EXPDTA X-RAY DIFFRACTION AUTHOR J.DERRICK,V.KARRUPIAH REVDAT 2 20-DEC-23 4CT9 1 REMARK LINK REVDAT 1 21-JAN-15 4CT9 0 JRNL AUTH V.KARRUPIAH,J.DERRICK JRNL TITL COMPETENCE OR DAMAGE-INDUCIBLE PROTEIN CINA FROM THERMUS JRNL TITL 2 THERMOPHILUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH V.KARUPPIAH,A.THISTLETHWAITE,R.DAJANI,J.WARWICKER, REMARK 1 AUTH 2 J.P.DERRICK REMARK 1 TITL STRUCTURE AND MECHANISM OF THE BIFUNCTIONAL CINA ENZYME FROM REMARK 1 TITL 2 THERMUS THERMOPHILUS. REMARK 1 REF J.BIOL.CHEM. V. 289 33187 2014 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 25313401 REMARK 1 DOI 10.1074/JBC.M114.608448 REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 47715 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2555 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.14 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.20 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3201 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 179 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5962 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.81000 REMARK 3 B22 (A**2) : -1.92000 REMARK 3 B33 (A**2) : 1.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.231 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.320 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6140 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8326 ; 1.521 ; 2.004 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 774 ; 6.034 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 250 ;32.853 ;21.560 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1026 ;14.676 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 80 ;19.819 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 941 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4612 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES ON CHAIN B 193-203 INCLUSIVE ARE DISORDERED. REMARK 4 REMARK 4 4CT9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1290059773. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50324 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.140 REMARK 200 RESOLUTION RANGE LOW (A) : 33.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2A9S REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM SULFATE 0.1 M BIS-TRIS REMARK 280 PROPANE 20 % (W/V) PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.59500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.48500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.89500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.48500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.59500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.89500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG B 193 REMARK 465 LEU B 194 REMARK 465 GLY B 195 REMARK 465 PRO B 196 REMARK 465 LEU B 197 REMARK 465 PHE B 198 REMARK 465 VAL B 199 REMARK 465 ARG B 200 REMARK 465 GLU B 201 REMARK 465 GLU B 202 REMARK 465 GLU B 203 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N MET A 1 O HOH A 2001 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 376 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 269 -93.15 -99.32 REMARK 500 SER A 295 76.53 -103.32 REMARK 500 PRO B 32 2.25 -69.11 REMARK 500 PRO B 131 6.80 -65.79 REMARK 500 VAL B 191 -48.24 -28.51 REMARK 500 SER B 269 -84.63 -104.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2159 O REMARK 620 2 ARG B 321 NE 95.2 REMARK 620 3 GLU B 325 OE2 113.6 142.4 REMARK 620 4 HOH B2136 O 91.1 86.9 114.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CT8 RELATED DB: PDB REMARK 900 COMPETENCE OR DAMAGE-INDUCIBLE PROTEIN CINA FROM THERMUS REMARK 900 THERMOPHILUS REMARK 900 RELATED ID: 4CTA RELATED DB: PDB REMARK 900 COMPETENCE OR DAMAGE-INDUCIBLE PROTEIN CINA FROM THERMUS REMARK 900 THERMOPHILUS DBREF 4CT9 A 1 394 UNP Q5SHB0 Q5SHB0_THET8 1 394 DBREF 4CT9 B 1 394 UNP Q5SHB0 Q5SHB0_THET8 1 394 SEQADV 4CT9 GLU A 201 UNP Q5SHB0 GLY 201 CONFLICT SEQADV 4CT9 GLU B 201 UNP Q5SHB0 GLY 201 CONFLICT SEQRES 1 A 394 MET GLU ARG ALA GLU ILE LEU GLY VAL GLY THR GLU LEU SEQRES 2 A 394 LEU TYR GLY GLU THR LEU ASP THR ASN THR ALA GLU ILE SEQRES 3 A 394 ALA ARG SER LEU LYS PRO TYR ALA LEU LYS VAL GLU ARG SEQRES 4 A 394 THR LEU ARG VAL ALA ASP GLU VAL ALA PRO LEU ALA ARG SEQRES 5 A 394 GLU VAL GLU GLU ALA PHE ALA ARG ALA ARG LEU VAL VAL SEQRES 6 A 394 LEU SER GLY GLY LEU GLY PRO THR PRO ASP ASP VAL THR SEQRES 7 A 394 ARG GLU ALA VAL ALA LEU ALA LEU GLY GLU PRO LEU GLU SEQRES 8 A 394 LEU ASP GLU ALA VAL LEU GLY GLU ILE GLU ALA PHE PHE SEQRES 9 A 394 ARG ALA ARG GLY ARG ALA MET PRO GLU ALA ASN ARG LYS SEQRES 10 A 394 GLN ALA MET ARG ILE PRO SER ALA THR TRP LEU LYS ASN SEQRES 11 A 394 PRO ARG GLY THR ALA PRO GLY TRP TRP VAL ARG LYS GLY SEQRES 12 A 394 GLY LYS ASP LEU VAL LEU LEU PRO GLY PRO PRO PRO GLU SEQRES 13 A 394 TRP ARG PRO MET TRP GLN GLU VAL LEU PRO ARG LEU GLY SEQRES 14 A 394 LEU PRO ARG ARG PRO TYR ALA GLU ARG VAL LEU LYS THR SEQRES 15 A 394 TRP GLY ILE GLY GLU SER GLU ILE VAL GLU ARG LEU GLY SEQRES 16 A 394 PRO LEU PHE VAL ARG GLU GLU GLU VAL GLU VAL GLY THR SEQRES 17 A 394 TYR PRO LYS VAL HIS GLY VAL GLU VAL VAL VAL ARG GLY SEQRES 18 A 394 ARG GLU ASP ARG VAL ALA GLU LEU ALA GLU ARG ILE LYS SEQRES 19 A 394 LYS LYS LEU LEU LYS GLU VAL TRP GLY GLU GLY GLU MET SEQRES 20 A 394 THR LEU ALA GLU ALA VAL LYS ARG ARG MET GLU ARG GLU SEQRES 21 A 394 GLY ALA THR LEU SER THR MET GLU SER LEU THR GLY GLY SEQRES 22 A 394 LEU LEU GLY ALA GLU ILE THR ARG VAL PRO GLY ALA SER SEQRES 23 A 394 ARG PHE TYR LEU GLY GLY VAL VAL SER TYR SER VAL GLY SEQRES 24 A 394 ALA LYS ALA ARG PHE GLY VAL PRO GLN ASP LEU LEU SER SEQRES 25 A 394 ARG THR VAL SER ALA GLU THR ALA ARG ALA MET ALA GLU SEQRES 26 A 394 ALA ALA ARG SER LEU PHE GLY SER THR TYR ALA LEU ALA SEQRES 27 A 394 THR THR GLY VAL ALA GLY PRO ASP PRO LEU GLU GLY GLU SEQRES 28 A 394 PRO PRO GLY THR VAL TYR VAL ALA LEU ALA GLY PRO THR SEQRES 29 A 394 GLY ALA GLU VAL ARG ARG TYR ARG PHE PRO GLY ASP ARG SEQRES 30 A 394 GLU THR VAL ARG LEU ARG SER VAL TYR ALA ALA LEU ALA SEQRES 31 A 394 LEU LEU VAL THR SEQRES 1 B 394 MET GLU ARG ALA GLU ILE LEU GLY VAL GLY THR GLU LEU SEQRES 2 B 394 LEU TYR GLY GLU THR LEU ASP THR ASN THR ALA GLU ILE SEQRES 3 B 394 ALA ARG SER LEU LYS PRO TYR ALA LEU LYS VAL GLU ARG SEQRES 4 B 394 THR LEU ARG VAL ALA ASP GLU VAL ALA PRO LEU ALA ARG SEQRES 5 B 394 GLU VAL GLU GLU ALA PHE ALA ARG ALA ARG LEU VAL VAL SEQRES 6 B 394 LEU SER GLY GLY LEU GLY PRO THR PRO ASP ASP VAL THR SEQRES 7 B 394 ARG GLU ALA VAL ALA LEU ALA LEU GLY GLU PRO LEU GLU SEQRES 8 B 394 LEU ASP GLU ALA VAL LEU GLY GLU ILE GLU ALA PHE PHE SEQRES 9 B 394 ARG ALA ARG GLY ARG ALA MET PRO GLU ALA ASN ARG LYS SEQRES 10 B 394 GLN ALA MET ARG ILE PRO SER ALA THR TRP LEU LYS ASN SEQRES 11 B 394 PRO ARG GLY THR ALA PRO GLY TRP TRP VAL ARG LYS GLY SEQRES 12 B 394 GLY LYS ASP LEU VAL LEU LEU PRO GLY PRO PRO PRO GLU SEQRES 13 B 394 TRP ARG PRO MET TRP GLN GLU VAL LEU PRO ARG LEU GLY SEQRES 14 B 394 LEU PRO ARG ARG PRO TYR ALA GLU ARG VAL LEU LYS THR SEQRES 15 B 394 TRP GLY ILE GLY GLU SER GLU ILE VAL GLU ARG LEU GLY SEQRES 16 B 394 PRO LEU PHE VAL ARG GLU GLU GLU VAL GLU VAL GLY THR SEQRES 17 B 394 TYR PRO LYS VAL HIS GLY VAL GLU VAL VAL VAL ARG GLY SEQRES 18 B 394 ARG GLU ASP ARG VAL ALA GLU LEU ALA GLU ARG ILE LYS SEQRES 19 B 394 LYS LYS LEU LEU LYS GLU VAL TRP GLY GLU GLY GLU MET SEQRES 20 B 394 THR LEU ALA GLU ALA VAL LYS ARG ARG MET GLU ARG GLU SEQRES 21 B 394 GLY ALA THR LEU SER THR MET GLU SER LEU THR GLY GLY SEQRES 22 B 394 LEU LEU GLY ALA GLU ILE THR ARG VAL PRO GLY ALA SER SEQRES 23 B 394 ARG PHE TYR LEU GLY GLY VAL VAL SER TYR SER VAL GLY SEQRES 24 B 394 ALA LYS ALA ARG PHE GLY VAL PRO GLN ASP LEU LEU SER SEQRES 25 B 394 ARG THR VAL SER ALA GLU THR ALA ARG ALA MET ALA GLU SEQRES 26 B 394 ALA ALA ARG SER LEU PHE GLY SER THR TYR ALA LEU ALA SEQRES 27 B 394 THR THR GLY VAL ALA GLY PRO ASP PRO LEU GLU GLY GLU SEQRES 28 B 394 PRO PRO GLY THR VAL TYR VAL ALA LEU ALA GLY PRO THR SEQRES 29 B 394 GLY ALA GLU VAL ARG ARG TYR ARG PHE PRO GLY ASP ARG SEQRES 30 B 394 GLU THR VAL ARG LEU ARG SER VAL TYR ALA ALA LEU ALA SEQRES 31 B 394 LEU LEU VAL THR HET AMP A 400 23 HET SO4 A 401 5 HET GOL A 402 6 HET GOL A 403 6 HET NA A 404 1 HET SO4 B 401 5 HET GOL B 402 6 HET GOL B 403 6 HET GOL B 404 6 HET GOL B 405 6 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 AMP C10 H14 N5 O7 P FORMUL 4 SO4 2(O4 S 2-) FORMUL 5 GOL 6(C3 H8 O3) FORMUL 7 NA NA 1+ FORMUL 13 HOH *350(H2 O) HELIX 1 1 GLY A 10 TYR A 15 1 6 HELIX 2 2 THR A 21 LEU A 30 1 10 HELIX 3 3 GLU A 46 ARG A 60 1 15 HELIX 4 4 VAL A 77 GLY A 87 1 11 HELIX 5 5 ASP A 93 ALA A 106 1 14 HELIX 6 6 PRO A 112 GLN A 118 5 7 HELIX 7 7 PRO A 153 LEU A 165 1 13 HELIX 8 8 PRO A 166 LEU A 168 5 3 HELIX 9 9 GLY A 186 GLY A 195 1 10 HELIX 10 10 PRO A 196 PHE A 198 5 3 HELIX 11 11 GLU A 223 LEU A 237 1 15 HELIX 12 12 THR A 248 GLY A 261 1 14 HELIX 13 13 GLY A 273 THR A 280 1 8 HELIX 14 14 GLY A 284 ARG A 287 5 4 HELIX 15 15 SER A 297 PHE A 304 1 8 HELIX 16 16 PRO A 307 LEU A 311 5 5 HELIX 17 17 SER A 316 GLY A 332 1 17 HELIX 18 18 ASP A 376 LEU A 391 1 16 HELIX 19 19 GLY B 10 TYR B 15 1 6 HELIX 20 20 THR B 21 LEU B 30 1 10 HELIX 21 21 GLU B 46 ALA B 61 1 16 HELIX 22 22 VAL B 77 GLY B 87 1 11 HELIX 23 23 ASP B 93 ARG B 107 1 15 HELIX 24 24 PRO B 112 GLN B 118 5 7 HELIX 25 25 PRO B 153 LEU B 165 1 13 HELIX 26 26 PRO B 166 GLY B 169 5 4 HELIX 27 27 GLY B 186 GLU B 192 1 7 HELIX 28 28 GLU B 223 LEU B 237 1 15 HELIX 29 29 THR B 248 GLY B 261 1 14 HELIX 30 30 GLY B 273 ARG B 281 1 9 HELIX 31 31 GLY B 284 ARG B 287 5 4 HELIX 32 32 SER B 297 PHE B 304 1 8 HELIX 33 33 PRO B 307 LEU B 311 5 5 HELIX 34 34 SER B 316 GLY B 332 1 17 HELIX 35 35 ASP B 376 THR B 394 1 19 SHEET 1 AA12 ALA A 125 LEU A 128 0 SHEET 2 AA12 GLY A 137 LYS A 142 -1 O GLY A 137 N LEU A 128 SHEET 3 AA12 LYS A 145 LEU A 150 -1 O LYS A 145 N LYS A 142 SHEET 4 AA12 ALA A 61 SER A 67 1 O ARG A 62 N ASP A 146 SHEET 5 AA12 ARG A 3 VAL A 9 1 O ARG A 3 N ARG A 62 SHEET 6 AA12 ARG A 39 VAL A 43 1 O ARG A 39 N ILE A 6 SHEET 7 AA12 ARG B 39 VAL B 43 -1 O THR B 40 N ARG A 42 SHEET 8 AA12 GLU B 2 VAL B 9 1 O ILE B 6 N LEU B 41 SHEET 9 AA12 LEU B 63 SER B 67 1 O LEU B 63 N GLU B 5 SHEET 10 AA12 LYS B 145 LEU B 150 1 O ASP B 146 N VAL B 64 SHEET 11 AA12 GLY B 137 LYS B 142 -1 O TRP B 138 N LEU B 149 SHEET 12 AA12 ALA B 125 LEU B 128 -1 O THR B 126 N TRP B 139 SHEET 1 AB 9 ALA A 125 LEU A 128 0 SHEET 2 AB 9 GLY A 137 LYS A 142 -1 O GLY A 137 N LEU A 128 SHEET 3 AB 9 LYS A 145 LEU A 150 -1 O LYS A 145 N LYS A 142 SHEET 4 AB 9 ALA A 61 SER A 67 1 O ARG A 62 N ASP A 146 SHEET 5 AB 9 ARG A 3 VAL A 9 1 O ARG A 3 N ARG A 62 SHEET 6 AB 9 ARG A 39 VAL A 43 1 O ARG A 39 N ILE A 6 SHEET 7 AB 9 ARG B 39 VAL B 43 -1 O THR B 40 N ARG A 42 SHEET 8 AB 9 GLU B 2 VAL B 9 1 O ILE B 6 N LEU B 41 SHEET 9 AB 9 LEU B 35 LYS B 36 1 O LYS B 36 N ALA B 4 SHEET 1 AC 2 GLU A 91 LEU A 92 0 SHEET 2 AC 2 MET A 120 ARG A 121 -1 O ARG A 121 N GLU A 91 SHEET 1 AD 4 VAL A 204 LYS A 211 0 SHEET 2 AD 4 GLY A 214 ARG A 222 -1 O GLY A 214 N LYS A 211 SHEET 3 AD 4 TYR A 175 THR A 182 -1 O ALA A 176 N GLY A 221 SHEET 4 AD 4 VAL A 241 GLU A 244 -1 N TRP A 242 O LYS A 181 SHEET 1 AE10 GLY A 365 ARG A 372 0 SHEET 2 AE10 THR A 355 GLY A 362 -1 O VAL A 356 N TYR A 371 SHEET 3 AE10 TYR A 335 GLY A 341 -1 O ALA A 336 N ALA A 361 SHEET 4 AE10 LEU A 264 GLU A 268 1 O SER A 265 N LEU A 337 SHEET 5 AE10 TYR A 289 VAL A 294 1 N LEU A 290 O LEU A 264 SHEET 6 AE10 TYR B 289 SER B 295 -1 O GLY B 292 N VAL A 294 SHEET 7 AE10 LEU B 264 GLU B 268 1 O LEU B 264 N LEU B 290 SHEET 8 AE10 TYR B 335 GLY B 341 1 O TYR B 335 N SER B 265 SHEET 9 AE10 THR B 355 GLY B 362 -1 O TYR B 357 N THR B 340 SHEET 10 AE10 GLY B 365 ARG B 372 -1 O GLY B 365 N GLY B 362 SHEET 1 BA 2 GLU B 91 LEU B 92 0 SHEET 2 BA 2 MET B 120 ARG B 121 -1 O ARG B 121 N GLU B 91 SHEET 1 BB 4 GLU B 205 LYS B 211 0 SHEET 2 BB 4 GLY B 214 ARG B 222 -1 O GLY B 214 N LYS B 211 SHEET 3 BB 4 TYR B 175 THR B 182 -1 O ALA B 176 N GLY B 221 SHEET 4 BB 4 VAL B 241 GLU B 244 -1 N TRP B 242 O LYS B 181 LINK NA NA A 404 O HOH A2159 1555 1555 2.94 LINK NA NA A 404 NE ARG B 321 1555 4555 2.90 LINK NA NA A 404 OE2 GLU B 325 1555 4555 2.52 LINK NA NA A 404 O HOH B2136 1555 4555 2.76 CISPEP 1 GLY A 344 PRO A 345 0 8.82 CISPEP 2 GLY B 344 PRO B 345 0 9.84 SITE 1 AC1 7 LEU A 13 LEU A 19 ASP A 20 THR A 21 SITE 2 AC1 7 ASN A 22 GLY A 152 PRO A 153 SITE 1 AC2 8 PRO A 283 GLY A 284 ALA A 285 SER A 286 SITE 2 AC2 8 HOH A2136 TYR B 296 ARG B 377 GOL B 402 SITE 1 AC3 9 VAL A 342 ALA A 343 GLY A 344 PRO A 345 SITE 2 AC3 9 ASP A 346 GOL A 403 HOH A2139 HOH A2199 SITE 3 AC3 9 SO4 B 401 SITE 1 AC4 7 SER A 269 SER A 295 TYR A 296 LYS A 301 SITE 2 AC4 7 GOL A 402 HOH A2156 SO4 B 401 SITE 1 AC5 4 HOH A2159 ARG B 321 GLU B 325 HOH B2136 SITE 1 AC6 8 TYR A 296 ARG A 377 GOL A 402 GOL A 403 SITE 2 AC6 8 HOH A2199 GLY B 284 ALA B 285 SER B 286 SITE 1 AC7 8 SO4 A 401 HOH A2136 VAL B 342 ALA B 343 SITE 2 AC7 8 GLY B 344 PRO B 345 ASP B 346 ARG B 377 SITE 1 AC8 3 ARG B 107 ARG B 109 HOH B2049 SITE 1 AC9 6 TRP B 183 GLY B 184 LYS B 211 VAL B 212 SITE 2 AC9 6 GLY B 214 ARG B 383 SITE 1 BC1 5 HOH A2152 ALA B 317 GLU B 318 ARG B 321 SITE 2 BC1 5 HOH B2140 CRYST1 73.190 93.790 132.970 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013663 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010662 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007520 0.00000