HEADER BIOSYNTHETIC PROTEIN 12-MAR-14 4CTA TITLE COMPETENCE OR DAMAGE-INDUCIBLE PROTEIN CINA FROM THERMUS THERMOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CINA-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CINA; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CINA-LIKE PROTEIN; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: CINA; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8; SOURCE 9 ORGANISM_TAXID: 300852; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS BIOSYNTHETIC PROTEIN, COMPETENCE, DAMAGE, NAD RECYCLING EXPDTA X-RAY DIFFRACTION AUTHOR J.DERRICK,V.KARUPPIAH REVDAT 6 20-DEC-23 4CTA 1 REMARK LINK REVDAT 5 14-JAN-15 4CTA 1 JRNL REVDAT 4 17-DEC-14 4CTA 1 JRNL REVDAT 3 29-OCT-14 4CTA 1 JRNL REVDAT 2 22-OCT-14 4CTA 1 AUTHOR JRNL REVDAT 1 15-OCT-14 4CTA 0 JRNL AUTH V.KARUPPIAH,A.THISTLETHWAITE,R.DAJANI,J.WARWICKER, JRNL AUTH 2 J.P.DERRICK JRNL TITL STRUCTURE AND MECHANISM OF THE BIFUNCTIONAL CINA ENZYME FROM JRNL TITL 2 THERMUS THERMOPHILUS JRNL REF J.BIOL.CHEM. V. 289 33187 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 25313401 JRNL DOI 10.1074/JBC.M114.608448 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 44168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2350 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2919 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.4290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6058 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 110 REMARK 3 SOLVENT ATOMS : 132 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.67000 REMARK 3 B22 (A**2) : -4.50000 REMARK 3 B33 (A**2) : 3.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.287 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.233 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.182 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.511 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6279 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8527 ; 1.842 ; 2.012 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 786 ; 7.031 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 257 ;32.811 ;21.595 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1045 ;18.028 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 82 ;20.020 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 957 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4708 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4CTA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1290059774. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46732 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.210 REMARK 200 RESOLUTION RANGE LOW (A) : 66.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2A9S REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM SULFATE, 0.1 M BIS-TRIS REMARK 280 PROPANE, 20 % (W/V) PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.29500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.89500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.88500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.89500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.29500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.88500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 203 NH1 ARG A 222 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 127 CE2 TRP A 127 CD2 0.078 REMARK 500 HIS B 213 CG HIS B 213 CD2 0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 370 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 34 56.52 -67.96 REMARK 500 LYS A 142 121.14 -171.13 REMARK 500 SER A 269 -77.84 -111.04 REMARK 500 SER A 295 79.80 -104.27 REMARK 500 ILE B 185 122.29 -172.16 REMARK 500 PHE B 198 45.06 -76.22 REMARK 500 HIS B 213 32.71 -93.72 REMARK 500 SER B 269 -82.76 -103.41 REMARK 500 PHE B 288 -25.45 -146.03 REMARK 500 ASP B 309 -25.66 -38.84 REMARK 500 SER B 316 144.82 -170.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 266 OG1 REMARK 620 2 GLU A 268 OE2 96.6 REMARK 620 3 VAL A 293 O 133.9 117.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2030 O REMARK 620 2 HOH A2031 O 77.1 REMARK 620 3 ASP B 76 OD1 113.6 110.1 REMARK 620 4 ASP B 76 OD2 76.1 75.1 47.0 REMARK 620 5 ATP B 400 O2A 97.5 85.6 147.3 160.5 REMARK 620 6 ATP B 400 O2B 90.8 164.5 83.5 111.7 86.5 REMARK 620 7 HOH B2014 O 155.6 78.5 73.9 96.4 81.9 113.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CT8 RELATED DB: PDB REMARK 900 COMPETENCE OR DAMAGE-INDUCIBLE PROTEIN CINA FROM THERMUS REMARK 900 THERMOPHILUS REMARK 900 RELATED ID: 4CT9 RELATED DB: PDB REMARK 900 COMPETENCE OR DAMAGE-INDUCIBLE PROTEIN CINA FROM THERMUS REMARK 900 THERMOPHILUS DBREF 4CTA A 1 394 UNP Q5SHB0 Q5SHB0_THET8 1 394 DBREF 4CTA B 1 394 UNP Q5SHB0 Q5SHB0_THET8 1 394 SEQADV 4CTA GLU A 201 UNP Q5SHB0 GLY 201 CONFLICT SEQADV 4CTA GLU A 204 UNP Q5SHB0 VAL 204 CONFLICT SEQADV 4CTA GLU B 201 UNP Q5SHB0 GLY 201 CONFLICT SEQRES 1 A 394 MET GLU ARG ALA GLU ILE LEU GLY VAL GLY THR GLU LEU SEQRES 2 A 394 LEU TYR GLY GLU THR LEU ASP THR ASN THR ALA GLU ILE SEQRES 3 A 394 ALA ARG SER LEU LYS PRO TYR ALA LEU LYS VAL GLU ARG SEQRES 4 A 394 THR LEU ARG VAL ALA ASP GLU VAL ALA PRO LEU ALA ARG SEQRES 5 A 394 GLU VAL GLU GLU ALA PHE ALA ARG ALA ARG LEU VAL VAL SEQRES 6 A 394 LEU SER GLY GLY LEU GLY PRO THR PRO ASP ASP VAL THR SEQRES 7 A 394 ARG GLU ALA VAL ALA LEU ALA LEU GLY GLU PRO LEU GLU SEQRES 8 A 394 LEU ASP GLU ALA VAL LEU GLY GLU ILE GLU ALA PHE PHE SEQRES 9 A 394 ARG ALA ARG GLY ARG ALA MET PRO GLU ALA ASN ARG LYS SEQRES 10 A 394 GLN ALA MET ARG ILE PRO SER ALA THR TRP LEU LYS ASN SEQRES 11 A 394 PRO ARG GLY THR ALA PRO GLY TRP TRP VAL ARG LYS GLY SEQRES 12 A 394 GLY LYS ASP LEU VAL LEU LEU PRO GLY PRO PRO PRO GLU SEQRES 13 A 394 TRP ARG PRO MET TRP GLN GLU VAL LEU PRO ARG LEU GLY SEQRES 14 A 394 LEU PRO ARG ARG PRO TYR ALA GLU ARG VAL LEU LYS THR SEQRES 15 A 394 TRP GLY ILE GLY GLU SER GLU ILE VAL GLU ARG LEU GLY SEQRES 16 A 394 PRO LEU PHE VAL ARG GLU GLU GLU GLU GLU VAL GLY THR SEQRES 17 A 394 TYR PRO LYS VAL HIS GLY VAL GLU VAL VAL VAL ARG GLY SEQRES 18 A 394 ARG GLU ASP ARG VAL ALA GLU LEU ALA GLU ARG ILE LYS SEQRES 19 A 394 LYS LYS LEU LEU LYS GLU VAL TRP GLY GLU GLY GLU MET SEQRES 20 A 394 THR LEU ALA GLU ALA VAL LYS ARG ARG MET GLU ARG GLU SEQRES 21 A 394 GLY ALA THR LEU SER THR MET GLU SER LEU THR GLY GLY SEQRES 22 A 394 LEU LEU GLY ALA GLU ILE THR ARG VAL PRO GLY ALA SER SEQRES 23 A 394 ARG PHE TYR LEU GLY GLY VAL VAL SER TYR SER VAL GLY SEQRES 24 A 394 ALA LYS ALA ARG PHE GLY VAL PRO GLN ASP LEU LEU SER SEQRES 25 A 394 ARG THR VAL SER ALA GLU THR ALA ARG ALA MET ALA GLU SEQRES 26 A 394 ALA ALA ARG SER LEU PHE GLY SER THR TYR ALA LEU ALA SEQRES 27 A 394 THR THR GLY VAL ALA GLY PRO ASP PRO LEU GLU GLY GLU SEQRES 28 A 394 PRO PRO GLY THR VAL TYR VAL ALA LEU ALA GLY PRO THR SEQRES 29 A 394 GLY ALA GLU VAL ARG ARG TYR ARG PHE PRO GLY ASP ARG SEQRES 30 A 394 GLU THR VAL ARG LEU ARG SER VAL TYR ALA ALA LEU ALA SEQRES 31 A 394 LEU LEU VAL THR SEQRES 1 B 394 MET GLU ARG ALA GLU ILE LEU GLY VAL GLY THR GLU LEU SEQRES 2 B 394 LEU TYR GLY GLU THR LEU ASP THR ASN THR ALA GLU ILE SEQRES 3 B 394 ALA ARG SER LEU LYS PRO TYR ALA LEU LYS VAL GLU ARG SEQRES 4 B 394 THR LEU ARG VAL ALA ASP GLU VAL ALA PRO LEU ALA ARG SEQRES 5 B 394 GLU VAL GLU GLU ALA PHE ALA ARG ALA ARG LEU VAL VAL SEQRES 6 B 394 LEU SER GLY GLY LEU GLY PRO THR PRO ASP ASP VAL THR SEQRES 7 B 394 ARG GLU ALA VAL ALA LEU ALA LEU GLY GLU PRO LEU GLU SEQRES 8 B 394 LEU ASP GLU ALA VAL LEU GLY GLU ILE GLU ALA PHE PHE SEQRES 9 B 394 ARG ALA ARG GLY ARG ALA MET PRO GLU ALA ASN ARG LYS SEQRES 10 B 394 GLN ALA MET ARG ILE PRO SER ALA THR TRP LEU LYS ASN SEQRES 11 B 394 PRO ARG GLY THR ALA PRO GLY TRP TRP VAL ARG LYS GLY SEQRES 12 B 394 GLY LYS ASP LEU VAL LEU LEU PRO GLY PRO PRO PRO GLU SEQRES 13 B 394 TRP ARG PRO MET TRP GLN GLU VAL LEU PRO ARG LEU GLY SEQRES 14 B 394 LEU PRO ARG ARG PRO TYR ALA GLU ARG VAL LEU LYS THR SEQRES 15 B 394 TRP GLY ILE GLY GLU SER GLU ILE VAL GLU ARG LEU GLY SEQRES 16 B 394 PRO LEU PHE VAL ARG GLU GLU GLU VAL GLU VAL GLY THR SEQRES 17 B 394 TYR PRO LYS VAL HIS GLY VAL GLU VAL VAL VAL ARG GLY SEQRES 18 B 394 ARG GLU ASP ARG VAL ALA GLU LEU ALA GLU ARG ILE LYS SEQRES 19 B 394 LYS LYS LEU LEU LYS GLU VAL TRP GLY GLU GLY GLU MET SEQRES 20 B 394 THR LEU ALA GLU ALA VAL LYS ARG ARG MET GLU ARG GLU SEQRES 21 B 394 GLY ALA THR LEU SER THR MET GLU SER LEU THR GLY GLY SEQRES 22 B 394 LEU LEU GLY ALA GLU ILE THR ARG VAL PRO GLY ALA SER SEQRES 23 B 394 ARG PHE TYR LEU GLY GLY VAL VAL SER TYR SER VAL GLY SEQRES 24 B 394 ALA LYS ALA ARG PHE GLY VAL PRO GLN ASP LEU LEU SER SEQRES 25 B 394 ARG THR VAL SER ALA GLU THR ALA ARG ALA MET ALA GLU SEQRES 26 B 394 ALA ALA ARG SER LEU PHE GLY SER THR TYR ALA LEU ALA SEQRES 27 B 394 THR THR GLY VAL ALA GLY PRO ASP PRO LEU GLU GLY GLU SEQRES 28 B 394 PRO PRO GLY THR VAL TYR VAL ALA LEU ALA GLY PRO THR SEQRES 29 B 394 GLY ALA GLU VAL ARG ARG TYR ARG PHE PRO GLY ASP ARG SEQRES 30 B 394 GLU THR VAL ARG LEU ARG SER VAL TYR ALA ALA LEU ALA SEQRES 31 B 394 LEU LEU VAL THR HET ATP A 400 31 HET GOL A 401 6 HET SO4 A 402 5 HET SO4 A 403 5 HET GOL A 404 6 HET GOL A 405 6 HET NA A 406 1 HET ATP B 400 31 HET MG B 401 1 HET SO4 B 402 5 HET GOL B 403 6 HET GOL B 404 6 HET NA B 405 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 4 GOL 5(C3 H8 O3) FORMUL 5 SO4 3(O4 S 2-) FORMUL 9 NA 2(NA 1+) FORMUL 11 MG MG 2+ FORMUL 16 HOH *132(H2 O) HELIX 1 1 GLY A 10 TYR A 15 1 6 HELIX 2 2 THR A 21 LEU A 30 1 10 HELIX 3 3 GLU A 46 ARG A 60 1 15 HELIX 4 4 VAL A 77 GLY A 87 1 11 HELIX 5 5 ASP A 93 ARG A 107 1 15 HELIX 6 6 PRO A 112 GLN A 118 5 7 HELIX 7 7 PRO A 153 LEU A 165 1 13 HELIX 8 8 PRO A 166 LEU A 168 5 3 HELIX 9 9 GLY A 186 GLY A 195 1 10 HELIX 10 10 PRO A 196 PHE A 198 5 3 HELIX 11 11 GLU A 223 LEU A 237 1 15 HELIX 12 12 THR A 248 GLY A 261 1 14 HELIX 13 13 GLY A 273 ARG A 281 1 9 HELIX 14 14 GLY A 284 ARG A 287 5 4 HELIX 15 15 SER A 297 PHE A 304 1 8 HELIX 16 16 PRO A 307 LEU A 311 5 5 HELIX 17 17 SER A 316 GLY A 332 1 17 HELIX 18 18 ASP A 376 THR A 394 1 19 HELIX 19 19 GLY B 10 TYR B 15 1 6 HELIX 20 20 THR B 21 LYS B 31 1 11 HELIX 21 21 GLU B 46 ALA B 61 1 16 HELIX 22 22 VAL B 77 GLY B 87 1 11 HELIX 23 23 ASP B 93 ALA B 106 1 14 HELIX 24 24 PRO B 112 GLN B 118 5 7 HELIX 25 25 PRO B 153 LEU B 165 1 13 HELIX 26 26 PRO B 166 GLY B 169 5 4 HELIX 27 27 GLY B 186 GLY B 195 1 10 HELIX 28 28 PRO B 196 PHE B 198 5 3 HELIX 29 29 GLU B 223 LEU B 237 1 15 HELIX 30 30 THR B 248 GLY B 261 1 14 HELIX 31 31 GLY B 273 VAL B 282 1 10 HELIX 32 32 GLY B 284 ARG B 287 5 4 HELIX 33 33 SER B 297 PHE B 304 1 8 HELIX 34 34 PRO B 307 LEU B 311 5 5 HELIX 35 35 SER B 316 GLY B 332 1 17 HELIX 36 36 ASP B 376 LEU B 391 1 16 SHEET 1 AA12 ALA A 125 LEU A 128 0 SHEET 2 AA12 GLY A 137 LYS A 142 -1 O GLY A 137 N LEU A 128 SHEET 3 AA12 LYS A 145 LEU A 150 -1 O LYS A 145 N LYS A 142 SHEET 4 AA12 ALA A 61 SER A 67 1 O ARG A 62 N ASP A 146 SHEET 5 AA12 ARG A 3 VAL A 9 1 O ARG A 3 N ARG A 62 SHEET 6 AA12 ARG A 39 VAL A 43 1 O LEU A 41 N GLY A 8 SHEET 7 AA12 ARG B 39 VAL B 43 -1 O THR B 40 N ARG A 42 SHEET 8 AA12 GLU B 2 VAL B 9 1 O ILE B 6 N LEU B 41 SHEET 9 AA12 LEU B 63 SER B 67 1 O LEU B 63 N GLU B 5 SHEET 10 AA12 LYS B 145 LEU B 150 1 O ASP B 146 N VAL B 64 SHEET 11 AA12 GLY B 137 LYS B 142 -1 O TRP B 138 N LEU B 149 SHEET 12 AA12 ALA B 125 LEU B 128 -1 O THR B 126 N TRP B 139 SHEET 1 AB 9 ALA A 125 LEU A 128 0 SHEET 2 AB 9 GLY A 137 LYS A 142 -1 O GLY A 137 N LEU A 128 SHEET 3 AB 9 LYS A 145 LEU A 150 -1 O LYS A 145 N LYS A 142 SHEET 4 AB 9 ALA A 61 SER A 67 1 O ARG A 62 N ASP A 146 SHEET 5 AB 9 ARG A 3 VAL A 9 1 O ARG A 3 N ARG A 62 SHEET 6 AB 9 ARG A 39 VAL A 43 1 O LEU A 41 N GLY A 8 SHEET 7 AB 9 ARG B 39 VAL B 43 -1 O THR B 40 N ARG A 42 SHEET 8 AB 9 GLU B 2 VAL B 9 1 O ILE B 6 N LEU B 41 SHEET 9 AB 9 LEU B 35 LYS B 36 1 O LYS B 36 N ALA B 4 SHEET 1 AC 2 GLU A 91 LEU A 92 0 SHEET 2 AC 2 MET A 120 ARG A 121 -1 O ARG A 121 N GLU A 91 SHEET 1 AD 4 GLU A 204 LYS A 211 0 SHEET 2 AD 4 GLY A 214 ARG A 222 -1 O GLY A 214 N LYS A 211 SHEET 3 AD 4 TYR A 175 THR A 182 -1 O ALA A 176 N GLY A 221 SHEET 4 AD 4 VAL A 241 GLU A 244 -1 N TRP A 242 O LYS A 181 SHEET 1 AE10 GLY A 365 ARG A 372 0 SHEET 2 AE10 THR A 355 GLY A 362 -1 O VAL A 356 N TYR A 371 SHEET 3 AE10 TYR A 335 GLY A 341 -1 O ALA A 336 N ALA A 361 SHEET 4 AE10 LEU A 264 GLU A 268 1 O SER A 265 N LEU A 337 SHEET 5 AE10 TYR A 289 SER A 295 1 N LEU A 290 O LEU A 264 SHEET 6 AE10 TYR B 289 VAL B 294 -1 O GLY B 292 N VAL A 294 SHEET 7 AE10 LEU B 264 GLU B 268 1 O LEU B 264 N LEU B 290 SHEET 8 AE10 TYR B 335 GLY B 341 1 O TYR B 335 N SER B 265 SHEET 9 AE10 THR B 355 GLY B 362 -1 O TYR B 357 N THR B 340 SHEET 10 AE10 GLY B 365 ARG B 372 -1 O GLY B 365 N GLY B 362 SHEET 1 BA 2 GLU B 91 LEU B 92 0 SHEET 2 BA 2 MET B 120 ARG B 121 -1 O ARG B 121 N GLU B 91 SHEET 1 BB 4 VAL B 204 LYS B 211 0 SHEET 2 BB 4 GLY B 214 ARG B 222 -1 O GLY B 214 N LYS B 211 SHEET 3 BB 4 TYR B 175 THR B 182 -1 O ALA B 176 N GLY B 221 SHEET 4 BB 4 VAL B 241 GLU B 244 -1 N TRP B 242 O LYS B 181 LINK OG1 THR A 266 NA NA B 405 1555 1555 2.49 LINK OE2 GLU A 268 NA NA B 405 1555 1555 2.66 LINK O VAL A 293 NA NA B 405 1555 1555 3.18 LINK O HOH A2030 MG MG B 401 1555 1555 2.20 LINK O HOH A2031 MG MG B 401 1555 1555 2.16 LINK OD1 ASP B 76 MG MG B 401 1555 1555 2.00 LINK OD2 ASP B 76 MG MG B 401 1555 1555 2.99 LINK O2A ATP B 400 MG MG B 401 1555 1555 1.96 LINK O2B ATP B 400 MG MG B 401 1555 1555 2.07 LINK MG MG B 401 O HOH B2014 1555 1555 2.05 CISPEP 1 GLY A 344 PRO A 345 0 9.15 CISPEP 2 GLY B 344 PRO B 345 0 8.89 SITE 1 AC1 15 LEU A 13 LEU A 19 ASP A 20 THR A 21 SITE 2 AC1 15 ASN A 22 GLY A 68 GLY A 69 LEU A 70 SITE 3 AC1 15 GLY A 71 ASP A 76 PRO A 151 GLY A 152 SITE 4 AC1 15 PRO A 153 GLU A 156 HOH A2022 SITE 1 AC2 6 VAL A 342 ALA A 343 GLY A 344 PRO A 345 SITE 2 AC2 6 ASP A 346 GOL A 404 SITE 1 AC3 7 PRO A 283 GLY A 284 ALA A 285 SER A 286 SITE 2 AC3 7 TYR B 296 ARG B 377 GOL B 404 SITE 1 AC4 3 ARG A 167 GLU B 351 ARG B 370 SITE 1 AC5 7 SER A 269 LEU A 270 TYR A 296 LYS A 301 SITE 2 AC5 7 GLY A 341 GOL A 401 SO4 B 402 SITE 1 AC6 6 TRP A 183 GLY A 184 ILE A 185 LYS A 211 SITE 2 AC6 6 VAL A 215 ARG A 383 SITE 1 AC7 3 HIS A 213 THR A 248 LEU A 249 SITE 1 AC8 28 PRO A 210 LYS A 211 HOH A2030 HOH A2031 SITE 2 AC8 28 HOH A2033 HOH A2034 LEU B 13 THR B 18 SITE 3 AC8 28 LEU B 19 ASP B 20 THR B 21 ASN B 22 SITE 4 AC8 28 GLY B 68 GLY B 69 LEU B 70 GLY B 71 SITE 5 AC8 28 ASP B 76 PRO B 151 GLY B 152 PRO B 153 SITE 6 AC8 28 GLU B 156 MG B 401 HOH B2003 HOH B2004 SITE 7 AC8 28 HOH B2006 HOH B2014 HOH B2069 HOH B2070 SITE 1 AC9 5 HOH A2030 HOH A2031 ASP B 76 ATP B 400 SITE 2 AC9 5 HOH B2014 SITE 1 BC1 6 TYR A 296 ARG A 377 GOL A 404 GLY B 284 SITE 2 BC1 6 ALA B 285 SER B 286 SITE 1 BC2 5 GLY B 184 LYS B 211 VAL B 212 GLY B 214 SITE 2 BC2 5 ARG B 383 SITE 1 BC3 6 SO4 A 402 VAL B 342 ALA B 343 GLY B 344 SITE 2 BC3 6 PRO B 345 ASP B 346 SITE 1 BC4 3 THR A 266 GLU A 268 VAL A 293 CRYST1 74.590 93.770 131.790 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013407 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010664 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007588 0.00000