HEADER HYDROLASE 13-MAR-14 4CTE TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE MODULAR LAMINARINASE TITLE 2 ZGLAMC MUTANT E142S IN COMPLEX WITH A THIO-OLIGOSACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-1,3-BETA-GLUCANASE, FAMILY GH16; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC MODULE, RESIDUES 23-255; COMPND 5 SYNONYM: LAMINARINASE; COMPND 6 EC: 3.2.1.39; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZOBELLIA GALACTANIVORANS; SOURCE 3 ORGANISM_TAXID: 63186; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PFO4; SOURCE 9 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS (DSM) KEYWDS HYDROLASE, GLYCOSIDE HYDROLASE FAMILLY GH16, MARINE BACTERIAL ENZYME, KEYWDS 2 THIO-OLIGOSACCHARIDE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.LABOUREL,M.JAM,L.LEGENTIL,B.SYLLA,E.FICKO-BLEAN,J.H.HEHEMANN, AUTHOR 2 V.FERRIERES,M.CZJZEK,G.MICHEL REVDAT 5 20-DEC-23 4CTE 1 HETSYN REVDAT 4 29-JUL-20 4CTE 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 25-FEB-15 4CTE 1 JRNL REVDAT 2 11-FEB-15 4CTE 1 JRNL REVDAT 1 14-JAN-15 4CTE 0 JRNL AUTH A.LABOUREL,M.JAM,L.LEGENTIL,B.SYLLA,J.H.HEHEMANN, JRNL AUTH 2 V.FERRIERES,M.CZJZEK,G.MICHEL JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF THE JRNL TITL 2 LAMINARINA ZGLAMC[GH16] FROM ZOBELLIA GALACTANIVORANS JRNL TITL 3 SUGGESTS PREFERRED RECOGNITION OF BRANCHED LAMINARIN JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 173 2015 JRNL REFN ISSN 0907-4449 JRNL PMID 25664729 JRNL DOI 10.1107/S139900471402450X REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 66528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3536 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4487 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 241 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3682 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 333 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.26000 REMARK 3 B22 (A**2) : 0.71000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.369 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3945 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5378 ; 1.986 ; 1.915 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 484 ; 5.404 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 223 ;35.377 ;25.336 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 581 ;10.881 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;19.997 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 541 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3164 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3945 ; 2.856 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 129 ;31.585 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4037 ;21.184 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 24 254 B 24 254 289 0.11 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 4.2680 43.6270 46.7130 REMARK 3 T TENSOR REMARK 3 T11: 0.0177 T22: 0.0166 REMARK 3 T33: 0.0246 T12: 0.0009 REMARK 3 T13: 0.0005 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.0523 L22: 0.0956 REMARK 3 L33: 0.1002 L12: -0.0248 REMARK 3 L13: -0.0705 L23: 0.0350 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: 0.0280 S13: -0.0119 REMARK 3 S21: -0.0154 S22: -0.0100 S23: 0.0165 REMARK 3 S31: -0.0069 S32: -0.0378 S33: 0.0108 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 24 B 302 REMARK 3 ORIGIN FOR THE GROUP (A): 11.3140 71.4320 85.0500 REMARK 3 T TENSOR REMARK 3 T11: 0.0172 T22: 0.0009 REMARK 3 T33: 0.0203 T12: 0.0015 REMARK 3 T13: -0.0011 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.0546 L22: 0.0071 REMARK 3 L33: 0.0377 L12: 0.0179 REMARK 3 L13: 0.0058 L23: 0.0071 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: -0.0033 S13: -0.0077 REMARK 3 S21: 0.0014 S22: -0.0017 S23: -0.0018 REMARK 3 S31: 0.0037 S32: -0.0007 S33: 0.0007 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4CTE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1290059985. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72254 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 48.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4CRQ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11% PEG 6000, 100 MM NA ACETATE PH REMARK 280 5.0, 220 MM MGCL2, 4% ISOPROPANOL AND 3% GLYCEROL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.00500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.14000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.96500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.14000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.00500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.96500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 23 REMARK 465 GLY A 255 REMARK 465 GLN B 23 REMARK 465 GLY B 255 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER B 157 O HOH B 2127 2.11 REMARK 500 O HOH A 2130 O HOH A 2136 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 230 CE2 TRP A 230 CD2 0.076 REMARK 500 HIS B 151 CG HIS B 151 CD2 0.070 REMARK 500 HIS B 163 CG HIS B 163 CD2 0.057 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 186 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 96 -44.89 -131.80 REMARK 500 TYR A 101 164.46 73.25 REMARK 500 SER A 131 -169.17 67.93 REMARK 500 ASN A 145 -130.80 56.70 REMARK 500 LEU A 148 41.99 -93.71 REMARK 500 SER B 88 -168.05 -160.48 REMARK 500 TYR B 101 160.10 69.13 REMARK 500 SER B 131 -162.03 74.94 REMARK 500 SER B 131 -170.23 66.24 REMARK 500 ASN B 145 -131.31 59.88 REMARK 500 LEU B 148 43.13 -95.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 260 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 32 O REMARK 620 2 GLY A 70 O 92.7 REMARK 620 3 ASP A 247 O 79.3 95.7 REMARK 620 4 ASP A 247 OD1 156.8 93.1 77.8 REMARK 620 5 HOH A2009 O 71.5 81.9 150.5 131.6 REMARK 620 6 HOH A2010 O 90.6 173.2 90.8 86.2 93.4 REMARK 620 7 HOH A2047 O 125.6 86.5 155.0 77.2 54.5 86.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 280 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 32 O REMARK 620 2 GLY B 70 O 91.3 REMARK 620 3 ASP B 247 OD1 152.4 92.9 REMARK 620 4 ASP B 247 O 76.9 92.5 75.7 REMARK 620 5 ACT B 282 OXT 134.7 85.7 72.8 148.3 REMARK 620 6 ACT B 282 O 78.8 98.1 127.4 153.7 57.1 REMARK 620 7 HOH B2009 O 91.5 176.0 83.4 85.4 94.4 85.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 285 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 126 OD1 REMARK 620 2 CYS B 135 O 74.3 REMARK 620 3 GLU B 213 O 162.2 98.6 REMARK 620 4 HOH B2103 O 70.0 119.0 126.8 REMARK 620 N 1 2 3 REMARK 999 REMARK 999 SEQUENCE REMARK 999 GLU 142 HAS BEEN MUTATED TO SER TO INACTIVATE THE ENZYME DBREF 4CTE A 23 255 UNP G0L2L9 G0L2L9_ZOBGA 23 255 DBREF 4CTE B 23 255 UNP G0L2L9 G0L2L9_ZOBGA 23 255 SEQADV 4CTE SER A 142 UNP G0L2L9 GLU 142 ENGINEERED MUTATION SEQADV 4CTE SER B 142 UNP G0L2L9 GLU 142 ENGINEERED MUTATION SEQRES 1 A 233 GLN ASP TYR ASN LEU VAL TRP GLN ASP GLU PHE ASP ASP SEQRES 2 A 233 GLY ILE GLY PRO ASP TRP VAL PHE GLU THR GLY MET GLY SEQRES 3 A 233 TYR ASN GLY TRP GLY ASN ASN GLU LEU GLN TYR TYR ARG SEQRES 4 A 233 ARG GLU ASN ALA ALA VAL GLU ASN GLY ASN LEU VAL ILE SEQRES 5 A 233 THR ALA LYS HIS GLU ASN PHE GLY GLY ALA GLN TYR THR SEQRES 6 A 233 SER ALA ARG MET LYS THR GLN GLY ARG LYS SER PHE LYS SEQRES 7 A 233 TYR GLY LYS ILE GLU ALA ARG ILE ALA LEU PRO SER GLY SEQRES 8 A 233 GLN GLY LEU TRP PRO ALA PHE TRP MET LEU GLY ASN ASN SEQRES 9 A 233 ILE THR SER VAL SER TRP PRO ALA CYS GLY GLU ILE ASP SEQRES 10 A 233 ILE MET SER ARG ILE ASN ASN ALA LEU GLN THR HIS GLY SEQRES 11 A 233 THR ILE HIS TRP SER ASP GLN ASN GLY ASP HIS ALA SER SEQRES 12 A 233 TYR GLY ASP ASP VAL GLY VAL SER ASP PRO GLY GLN TYR SEQRES 13 A 233 HIS ILE TYR SER VAL GLU TRP ASP ALA ASN SER ILE LYS SEQRES 14 A 233 TRP PHE VAL ASP GLY GLN GLN PHE ASN GLU VAL ASP ILE SEQRES 15 A 233 SER ASN GLY VAL ASN GLY THR GLY GLU PHE GLN ASN GLU SEQRES 16 A 233 PHE PHE ILE LEU LEU ASN MET ALA VAL GLY GLY ASP TRP SEQRES 17 A 233 PRO GLY PHE ASP VAL ASP GLN SER LYS LEU PRO ALA GLN SEQRES 18 A 233 MET LEU VAL ASP TYR VAL ARG VAL TYR GLN LYS GLY SEQRES 1 B 233 GLN ASP TYR ASN LEU VAL TRP GLN ASP GLU PHE ASP ASP SEQRES 2 B 233 GLY ILE GLY PRO ASP TRP VAL PHE GLU THR GLY MET GLY SEQRES 3 B 233 TYR ASN GLY TRP GLY ASN ASN GLU LEU GLN TYR TYR ARG SEQRES 4 B 233 ARG GLU ASN ALA ALA VAL GLU ASN GLY ASN LEU VAL ILE SEQRES 5 B 233 THR ALA LYS HIS GLU ASN PHE GLY GLY ALA GLN TYR THR SEQRES 6 B 233 SER ALA ARG MET LYS THR GLN GLY ARG LYS SER PHE LYS SEQRES 7 B 233 TYR GLY LYS ILE GLU ALA ARG ILE ALA LEU PRO SER GLY SEQRES 8 B 233 GLN GLY LEU TRP PRO ALA PHE TRP MET LEU GLY ASN ASN SEQRES 9 B 233 ILE THR SER VAL SER TRP PRO ALA CYS GLY GLU ILE ASP SEQRES 10 B 233 ILE MET SER ARG ILE ASN ASN ALA LEU GLN THR HIS GLY SEQRES 11 B 233 THR ILE HIS TRP SER ASP GLN ASN GLY ASP HIS ALA SER SEQRES 12 B 233 TYR GLY ASP ASP VAL GLY VAL SER ASP PRO GLY GLN TYR SEQRES 13 B 233 HIS ILE TYR SER VAL GLU TRP ASP ALA ASN SER ILE LYS SEQRES 14 B 233 TRP PHE VAL ASP GLY GLN GLN PHE ASN GLU VAL ASP ILE SEQRES 15 B 233 SER ASN GLY VAL ASN GLY THR GLY GLU PHE GLN ASN GLU SEQRES 16 B 233 PHE PHE ILE LEU LEU ASN MET ALA VAL GLY GLY ASP TRP SEQRES 17 B 233 PRO GLY PHE ASP VAL ASP GLN SER LYS LEU PRO ALA GLN SEQRES 18 B 233 MET LEU VAL ASP TYR VAL ARG VAL TYR GLN LYS GLY HET GS1 C 1 11 HET GS1 C 2 12 HET GS1 D 1 11 HET GS1 D 2 12 HET BGC D 3 11 HET CA A 260 1 HET CL A 261 1 HET EDO A 263 4 HET GOL A 284 6 HET CA B 280 1 HET CL B 281 1 HET ACT B 282 4 HET EDO B 283 4 HET GOL B 284 6 HET NA B 285 1 HETNAM GS1 1-THIO-BETA-D-GLUCOPYRANOSE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETNAM NA SODIUM ION HETSYN GS1 1-THIO-BETA-D-GLUCOSE; 1-THIO-D-GLUCOSE; 1-THIO-GLUCOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GS1 4(C6 H12 O5 S) FORMUL 4 BGC C6 H12 O6 FORMUL 5 CA 2(CA 2+) FORMUL 6 CL 2(CL 1-) FORMUL 7 EDO 2(C2 H6 O2) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 11 ACT C2 H3 O2 1- FORMUL 14 NA NA 1+ FORMUL 15 HOH *333(H2 O) HELIX 1 1 ASN A 50 GLU A 56 1 7 HELIX 2 2 ASN A 126 SER A 131 1 6 HELIX 3 3 SER A 205 ASN A 216 5 12 HELIX 4 4 GLN A 237 LEU A 240 5 4 HELIX 5 5 ASN B 50 GLU B 56 1 7 HELIX 6 6 ASN B 126 SER B 131 1 6 HELIX 7 7 SER B 205 ASN B 216 5 12 HELIX 8 8 GLN B 237 LEU B 240 5 4 SHEET 1 AA 2 ASN A 26 ASP A 31 0 SHEET 2 AA 2 ALA A 242 GLN A 253 -1 O VAL A 249 N ASP A 31 SHEET 1 AB 8 GLN A 58 TYR A 60 0 SHEET 2 AB 8 ALA A 84 SER A 88 1 O TYR A 86 N TYR A 59 SHEET 3 AB 8 ASN A 71 PHE A 81 -1 O LYS A 77 N THR A 87 SHEET 4 AB 8 ALA A 242 GLN A 253 -1 O ALA A 242 N ALA A 76 SHEET 5 AB 8 GLY A 102 ALA A 109 -1 O LYS A 103 N TYR A 252 SHEET 6 AB 8 HIS A 179 TRP A 185 -1 O HIS A 179 N ILE A 108 SHEET 7 AB 8 SER A 189 VAL A 194 -1 O LYS A 191 N GLU A 184 SHEET 8 AB 8 GLN A 197 ASP A 203 -1 O GLN A 197 N VAL A 194 SHEET 1 AC 4 GLN A 58 TYR A 60 0 SHEET 2 AC 4 ALA A 84 SER A 88 1 O TYR A 86 N TYR A 59 SHEET 3 AC 4 ASN A 71 PHE A 81 -1 O LYS A 77 N THR A 87 SHEET 4 AC 4 ALA A 65 GLU A 68 1 O ALA A 66 N VAL A 73 SHEET 1 AD 7 VAL A 42 GLU A 44 0 SHEET 2 AD 7 ARG A 90 LYS A 92 -1 O ARG A 90 N GLU A 44 SHEET 3 AD 7 PHE A 218 VAL A 226 -1 O LEU A 222 N MET A 91 SHEET 4 AD 7 LEU A 116 GLY A 124 -1 O TRP A 117 N ALA A 225 SHEET 5 AD 7 GLU A 137 SER A 142 -1 O ILE A 138 N MET A 122 SHEET 6 AD 7 GLN A 149 SER A 157 -1 O HIS A 151 N SER A 142 SHEET 7 AD 7 HIS A 163 GLY A 171 -1 O ALA A 164 N TRP A 156 SHEET 1 BA 2 ASN B 26 ASP B 31 0 SHEET 2 BA 2 ALA B 242 GLN B 253 -1 O VAL B 249 N ASP B 31 SHEET 1 BB 8 GLN B 58 TYR B 60 0 SHEET 2 BB 8 ALA B 84 SER B 88 1 O TYR B 86 N TYR B 59 SHEET 3 BB 8 ASN B 71 PHE B 81 -1 O LYS B 77 N THR B 87 SHEET 4 BB 8 ALA B 242 GLN B 253 -1 O ALA B 242 N ALA B 76 SHEET 5 BB 8 GLY B 102 ALA B 109 -1 O LYS B 103 N TYR B 252 SHEET 6 BB 8 HIS B 179 TRP B 185 -1 O HIS B 179 N ILE B 108 SHEET 7 BB 8 SER B 189 VAL B 194 -1 O LYS B 191 N GLU B 184 SHEET 8 BB 8 GLN B 197 ASP B 203 -1 O GLN B 197 N VAL B 194 SHEET 1 BC 4 GLN B 58 TYR B 60 0 SHEET 2 BC 4 ALA B 84 SER B 88 1 O TYR B 86 N TYR B 59 SHEET 3 BC 4 ASN B 71 PHE B 81 -1 O LYS B 77 N THR B 87 SHEET 4 BC 4 ALA B 65 GLU B 68 1 O ALA B 66 N VAL B 73 SHEET 1 BD 7 VAL B 42 GLU B 44 0 SHEET 2 BD 7 ARG B 90 LYS B 92 -1 O ARG B 90 N GLU B 44 SHEET 3 BD 7 PHE B 218 VAL B 226 -1 O LEU B 222 N MET B 91 SHEET 4 BD 7 LEU B 116 GLY B 124 -1 O TRP B 117 N ALA B 225 SHEET 5 BD 7 GLU B 137 SER B 142 -1 O ILE B 138 N MET B 122 SHEET 6 BD 7 GLN B 149 SER B 157 -1 O HIS B 151 N SER B 142 SHEET 7 BD 7 HIS B 163 GLY B 171 -1 O ALA B 164 N TRP B 156 LINK C3 GS1 C 1 S1 GS1 C 2 1555 1555 1.67 LINK C3 GS1 D 1 S1 GS1 D 2 1555 1555 1.30 LINK O3 GS1 D 2 C1 BGC D 3 1555 1555 1.43 LINK O GLU A 32 CA CA A 260 1555 1555 2.29 LINK O GLY A 70 CA CA A 260 1555 1555 2.29 LINK O ASP A 247 CA CA A 260 1555 1555 2.34 LINK OD1 ASP A 247 CA CA A 260 1555 1555 2.32 LINK CA CA A 260 O HOH A2009 1555 1555 2.39 LINK CA CA A 260 O HOH A2010 1555 1555 2.36 LINK CA CA A 260 O HOH A2047 1555 1555 2.53 LINK O GLU B 32 CA CA B 280 1555 1555 2.30 LINK O GLY B 70 CA CA B 280 1555 1555 2.30 LINK OD1 ASN B 126 NA NA B 285 1555 1555 2.96 LINK O CYS B 135 NA NA B 285 1555 1555 2.87 LINK O GLU B 213 NA NA B 285 1555 1555 2.85 LINK OD1 ASP B 247 CA CA B 280 1555 1555 2.28 LINK O ASP B 247 CA CA B 280 1555 1555 2.45 LINK CA CA B 280 OXT ACT B 282 1555 1555 2.52 LINK CA CA B 280 O ACT B 282 1555 1555 2.55 LINK CA CA B 280 O HOH B2009 1555 1555 2.40 LINK NA NA B 285 O HOH B2103 1555 1555 2.71 CISPEP 1 TRP A 132 PRO A 133 0 0.63 CISPEP 2 LEU A 240 PRO A 241 0 1.00 CISPEP 3 TRP B 132 PRO B 133 0 7.42 CISPEP 4 LEU B 240 PRO B 241 0 1.77 CRYST1 56.010 93.930 142.280 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017854 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010646 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007028 0.00000