HEADER TRANSFERASE 14-MAR-14 4CTK TITLE DENGUE 3 NS5 METHYLTRANSFERASE BOUND TO S-ADENOSYL METHIONINE AND TITLE 2 FRAGMENT 2A4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYPROTEIN; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: METHYLFRANSFERASE DOMAIN, RESIDUES 2491-2766; COMPND 5 SYNONYM: NON-STRUCTURAL PROTEIN 5; COMPND 6 EC: 2.1.1.56, 2.1.1.57; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 3; SOURCE 3 ORGANISM_TAXID: 11069; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCOX20A; SOURCE 10 OTHER_DETAILS: SYNTHETIC GENE KEYWDS TRANSFERASE, DENGUE VIRUS, NS5 METHYLTRANSFERASE, FRAGMENT-BASED DRUG KEYWDS 2 DISCOVERY, ANTIVIRAL SCREENING EXPDTA X-RAY DIFFRACTION AUTHOR K.BARRAL,G.BRICOGNE,A.SHARFF REVDAT 4 08-MAY-24 4CTK 1 REMARK REVDAT 3 29-MAR-17 4CTK 1 REMARK REVDAT 2 28-MAY-14 4CTK 1 JRNL REVDAT 1 16-APR-14 4CTK 0 JRNL AUTH B.COUTARD,E.DECROLY,C.LI,A.SHARFF,J.LESCAR,G.BRICOGNE, JRNL AUTH 2 K.BARRAL JRNL TITL ASSESSMENT OF DENGUE VIRUS HELICASE AND METHYLTRANSFERASE AS JRNL TITL 2 TARGETS FOR FRAGMENT-BASED DRUG DISCOVERY. JRNL REF ANTIVIRAL RES. V. 106 61 2014 JRNL REFN ISSN 0166-3542 JRNL PMID 24704437 JRNL DOI 10.1016/J.ANTIVIRAL.2014.03.013 REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 88262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 4467 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.57 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.88 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 5732 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2219 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5435 REMARK 3 BIN R VALUE (WORKING SET) : 0.2218 REMARK 3 BIN FREE R VALUE : 0.2236 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.18 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 297 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4086 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 79 REMARK 3 SOLVENT ATOMS : 658 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.77680 REMARK 3 B22 (A**2) : -7.70140 REMARK 3 B33 (A**2) : 5.92460 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.212 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.076 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.077 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.071 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.073 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4422 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5989 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1619 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 97 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 711 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4422 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 549 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5645 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.52 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.02 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 39.8302 41.5726 -1.7781 REMARK 3 T TENSOR REMARK 3 T11: -0.1002 T22: 0.0371 REMARK 3 T33: -0.0351 T12: 0.0183 REMARK 3 T13: -0.0058 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.8567 L22: 0.6330 REMARK 3 L33: 0.7890 L12: 0.3508 REMARK 3 L13: 0.0985 L23: 0.1831 REMARK 3 S TENSOR REMARK 3 S11: 0.0221 S12: 0.0983 S13: -0.0350 REMARK 3 S21: 0.0279 S22: 0.0197 S23: -0.0168 REMARK 3 S31: 0.0444 S32: 0.0410 S33: -0.0418 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 14.0779 13.1114 -10.6751 REMARK 3 T TENSOR REMARK 3 T11: 0.0283 T22: -0.1488 REMARK 3 T33: -0.1077 T12: 0.0002 REMARK 3 T13: -0.0480 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.8739 L22: 0.4364 REMARK 3 L33: 4.0577 L12: -0.0848 REMARK 3 L13: 0.9633 L23: -0.4981 REMARK 3 S TENSOR REMARK 3 S11: 0.1596 S12: 0.0309 S13: -0.0749 REMARK 3 S21: -0.0610 S22: 0.0348 S23: 0.0103 REMARK 3 S31: 0.6367 S32: 0.0912 S33: -0.1944 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CTK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1290060013. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918400 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS (VERSION DECEMBER 6 2010) REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88466 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.533 REMARK 200 RESOLUTION RANGE LOW (A) : 58.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.50400 REMARK 200 R SYM FOR SHELL (I) : 0.50400 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.63000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 92.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.63000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 92.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C2179 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 THR A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 GLN A 5 REMARK 465 GLY A 6 REMARK 465 VAL A 264 REMARK 465 ASN A 265 REMARK 465 ALA A 266 REMARK 465 GLU A 267 REMARK 465 PRO A 268 REMARK 465 GLU A 269 REMARK 465 THR A 270 REMARK 465 PRO A 271 REMARK 465 ASN A 272 REMARK 465 MET A 273 REMARK 465 ASP A 274 REMARK 465 VAL A 275 REMARK 465 ILE A 276 REMARK 465 GLY C 1 REMARK 465 THR C 2 REMARK 465 GLY C 3 REMARK 465 SER C 4 REMARK 465 GLN C 5 REMARK 465 GLY C 6 REMARK 465 VAL C 264 REMARK 465 ASN C 265 REMARK 465 ALA C 266 REMARK 465 GLU C 267 REMARK 465 PRO C 268 REMARK 465 GLU C 269 REMARK 465 THR C 270 REMARK 465 PRO C 271 REMARK 465 ASN C 272 REMARK 465 MET C 273 REMARK 465 ASP C 274 REMARK 465 VAL C 275 REMARK 465 ILE C 276 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 263 CA C O CB CG ND1 CD2 REMARK 470 HIS A 263 CE1 NE2 REMARK 470 HIS C 263 CA C O CB CG ND1 CD2 REMARK 470 HIS C 263 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 52 -49.35 69.93 REMARK 500 HIS C 52 -48.12 69.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2097 DISTANCE = 6.88 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 1263 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM C 1263 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SVN A 1264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1265 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SVN A 1266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 1267 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CTJ RELATED DB: PDB REMARK 900 DENGUE 3 NS5 METHYLTRANSFERASE BOUND TO S-ADENOSYL METHIONINE AND REMARK 900 FRAGMENT 3A9 DBREF 4CTK A 1 276 UNP A9LIE0 A9LIE0_9FLAV 2491 2766 DBREF 4CTK C 1 276 UNP A9LIE0 A9LIE0_9FLAV 2491 2766 SEQRES 1 A 276 GLY THR GLY SER GLN GLY GLU THR LEU GLY GLU LYS TRP SEQRES 2 A 276 LYS LYS LYS LEU ASN GLN LEU SER ARG LYS GLU PHE ASP SEQRES 3 A 276 LEU TYR LYS LYS SER GLY ILE THR GLU VAL ASP ARG THR SEQRES 4 A 276 GLU ALA LYS GLU GLY LEU LYS ARG GLY GLU THR THR HIS SEQRES 5 A 276 HIS ALA VAL SER ARG GLY SER ALA LYS LEU GLN TRP PHE SEQRES 6 A 276 VAL GLU ARG ASN MET VAL ILE PRO GLU GLY ARG VAL ILE SEQRES 7 A 276 ASP LEU GLY CYS GLY ARG GLY GLY TRP SER TYR TYR CYS SEQRES 8 A 276 ALA GLY LEU LYS LYS VAL THR GLU VAL ARG GLY TYR THR SEQRES 9 A 276 LYS GLY GLY PRO GLY HIS GLU GLU PRO VAL PRO MET SER SEQRES 10 A 276 THR TYR GLY TRP ASN ILE VAL LYS LEU MET SER GLY LYS SEQRES 11 A 276 ASP VAL PHE TYR LEU PRO PRO GLU LYS CYS ASP THR LEU SEQRES 12 A 276 LEU CYS ASP ILE GLY GLU SER SER PRO SER PRO THR VAL SEQRES 13 A 276 GLU GLU SER ARG THR ILE ARG VAL LEU LYS MET VAL GLU SEQRES 14 A 276 PRO TRP LEU LYS ASN ASN GLN PHE CYS ILE LYS VAL LEU SEQRES 15 A 276 ASN PRO TYR MET PRO THR VAL ILE GLU HIS LEU GLU ARG SEQRES 16 A 276 LEU GLN ARG LYS HIS GLY GLY MET LEU VAL ARG ASN PRO SEQRES 17 A 276 LEU SER ARG ASN SER THR HIS GLU MET TYR TRP ILE SER SEQRES 18 A 276 ASN GLY THR GLY ASN ILE VAL SER SER VAL ASN MET VAL SEQRES 19 A 276 SER ARG LEU LEU LEU ASN ARG PHE THR MET THR HIS ARG SEQRES 20 A 276 ARG PRO THR ILE GLU LYS ASP VAL ASP LEU GLY ALA GLY SEQRES 21 A 276 THR ARG HIS VAL ASN ALA GLU PRO GLU THR PRO ASN MET SEQRES 22 A 276 ASP VAL ILE SEQRES 1 C 276 GLY THR GLY SER GLN GLY GLU THR LEU GLY GLU LYS TRP SEQRES 2 C 276 LYS LYS LYS LEU ASN GLN LEU SER ARG LYS GLU PHE ASP SEQRES 3 C 276 LEU TYR LYS LYS SER GLY ILE THR GLU VAL ASP ARG THR SEQRES 4 C 276 GLU ALA LYS GLU GLY LEU LYS ARG GLY GLU THR THR HIS SEQRES 5 C 276 HIS ALA VAL SER ARG GLY SER ALA LYS LEU GLN TRP PHE SEQRES 6 C 276 VAL GLU ARG ASN MET VAL ILE PRO GLU GLY ARG VAL ILE SEQRES 7 C 276 ASP LEU GLY CYS GLY ARG GLY GLY TRP SER TYR TYR CYS SEQRES 8 C 276 ALA GLY LEU LYS LYS VAL THR GLU VAL ARG GLY TYR THR SEQRES 9 C 276 LYS GLY GLY PRO GLY HIS GLU GLU PRO VAL PRO MET SER SEQRES 10 C 276 THR TYR GLY TRP ASN ILE VAL LYS LEU MET SER GLY LYS SEQRES 11 C 276 ASP VAL PHE TYR LEU PRO PRO GLU LYS CYS ASP THR LEU SEQRES 12 C 276 LEU CYS ASP ILE GLY GLU SER SER PRO SER PRO THR VAL SEQRES 13 C 276 GLU GLU SER ARG THR ILE ARG VAL LEU LYS MET VAL GLU SEQRES 14 C 276 PRO TRP LEU LYS ASN ASN GLN PHE CYS ILE LYS VAL LEU SEQRES 15 C 276 ASN PRO TYR MET PRO THR VAL ILE GLU HIS LEU GLU ARG SEQRES 16 C 276 LEU GLN ARG LYS HIS GLY GLY MET LEU VAL ARG ASN PRO SEQRES 17 C 276 LEU SER ARG ASN SER THR HIS GLU MET TYR TRP ILE SER SEQRES 18 C 276 ASN GLY THR GLY ASN ILE VAL SER SER VAL ASN MET VAL SEQRES 19 C 276 SER ARG LEU LEU LEU ASN ARG PHE THR MET THR HIS ARG SEQRES 20 C 276 ARG PRO THR ILE GLU LYS ASP VAL ASP LEU GLY ALA GLY SEQRES 21 C 276 THR ARG HIS VAL ASN ALA GLU PRO GLU THR PRO ASN MET SEQRES 22 C 276 ASP VAL ILE HET SAM A1263 27 HET SVN A1264 20 HET NA A1265 1 HET SVN A1266 10 HET DMS A1267 4 HET SAM C1263 27 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM SVN THIENO[2,3-B]PYRAZIN-7-AMINE HETNAM NA SODIUM ION HETNAM DMS DIMETHYL SULFOXIDE FORMUL 3 SAM 2(C15 H22 N6 O5 S) FORMUL 4 SVN 2(C6 H5 N3 S) FORMUL 5 NA NA 1+ FORMUL 7 DMS C2 H6 O S FORMUL 9 HOH *658(H2 O) HELIX 1 1 THR A 8 LEU A 20 1 13 HELIX 2 2 SER A 21 LYS A 29 1 9 HELIX 3 3 ARG A 38 ARG A 47 1 10 HELIX 4 4 ARG A 57 GLU A 67 1 11 HELIX 5 5 GLY A 85 GLY A 93 1 9 HELIX 6 6 GLY A 120 ASN A 122 5 3 HELIX 7 7 ASP A 131 LEU A 135 5 5 HELIX 8 8 SER A 153 GLU A 169 1 17 HELIX 9 9 PRO A 170 LEU A 172 5 3 HELIX 10 10 MET A 186 GLY A 201 1 16 HELIX 11 11 ASN A 226 ARG A 241 1 16 HELIX 12 12 THR C 8 LEU C 20 1 13 HELIX 13 13 SER C 21 LYS C 29 1 9 HELIX 14 14 ARG C 38 ARG C 47 1 10 HELIX 15 15 ARG C 57 GLU C 67 1 11 HELIX 16 16 GLY C 85 GLY C 93 1 9 HELIX 17 17 GLY C 120 ASN C 122 5 3 HELIX 18 18 ASP C 131 LEU C 135 5 5 HELIX 19 19 SER C 153 GLU C 169 1 17 HELIX 20 20 PRO C 170 LEU C 172 5 3 HELIX 21 21 MET C 186 GLY C 201 1 16 HELIX 22 22 ASN C 226 MET C 244 1 19 SHEET 1 AA 2 THR A 34 ASP A 37 0 SHEET 2 AA 2 THR A 250 LYS A 253 1 O THR A 250 N GLU A 35 SHEET 1 AB 7 VAL A 124 MET A 127 0 SHEET 2 AB 7 VAL A 97 TYR A 103 1 O VAL A 100 N LYS A 125 SHEET 3 AB 7 GLY A 75 LEU A 80 1 O GLY A 75 N THR A 98 SHEET 4 AB 7 THR A 142 CYS A 145 1 O THR A 142 N ILE A 78 SHEET 5 AB 7 GLN A 176 VAL A 181 1 O GLN A 176 N LEU A 143 SHEET 6 AB 7 MET A 217 ILE A 220 -1 O MET A 217 N VAL A 181 SHEET 7 AB 7 MET A 203 VAL A 205 -1 O MET A 203 N ILE A 220 SHEET 1 CA 2 THR C 34 ASP C 37 0 SHEET 2 CA 2 THR C 250 LYS C 253 1 O THR C 250 N GLU C 35 SHEET 1 CB 7 VAL C 124 MET C 127 0 SHEET 2 CB 7 VAL C 97 TYR C 103 1 O VAL C 100 N LYS C 125 SHEET 3 CB 7 GLY C 75 LEU C 80 1 O GLY C 75 N THR C 98 SHEET 4 CB 7 THR C 142 CYS C 145 1 O THR C 142 N ILE C 78 SHEET 5 CB 7 GLN C 176 VAL C 181 1 O GLN C 176 N LEU C 143 SHEET 6 CB 7 MET C 217 ILE C 220 -1 O MET C 217 N VAL C 181 SHEET 7 CB 7 MET C 203 VAL C 205 -1 O MET C 203 N ILE C 220 SITE 1 AC1 20 SER A 56 GLY A 58 GLY A 81 CYS A 82 SITE 2 AC1 20 GLY A 83 GLY A 86 TRP A 87 THR A 104 SITE 3 AC1 20 LYS A 105 HIS A 110 GLU A 111 LYS A 130 SITE 4 AC1 20 ASP A 131 VAL A 132 PHE A 133 ASP A 146 SITE 5 AC1 20 HOH A2166 HOH A2170 HOH A2198 HOH A2368 SITE 1 AC2 20 SER C 56 GLY C 58 GLY C 81 CYS C 82 SITE 2 AC2 20 GLY C 83 GLY C 86 TRP C 87 THR C 104 SITE 3 AC2 20 LYS C 105 HIS C 110 LYS C 130 ASP C 131 SITE 4 AC2 20 VAL C 132 PHE C 133 ASP C 146 ILE C 147 SITE 5 AC2 20 HOH C2130 HOH C2134 HOH C2157 HOH C2288 SITE 1 AC3 6 LEU A 17 LEU A 20 SER A 21 PHE A 25 SITE 2 AC3 6 SVN A1266 HOH A2041 SITE 1 AC4 1 GLY A 109 SITE 1 AC5 5 ASN A 18 GLU A 67 ASN A 69 PRO A 152 SITE 2 AC5 5 SVN A1264 SITE 1 AC6 5 TYR A 28 ARG A 241 PHE A 242 MET A 244 SITE 2 AC6 5 HOH A2054 CRYST1 61.260 185.100 52.020 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016324 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005402 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019223 0.00000