HEADER HYDROLASE 17-MAR-14 4CU9 TITLE UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE TITLE 2 STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GALACTOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CARBOHYDRATE BINDING MODULE, RESIDUES 1822-1998; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 STRAIN: NCH18; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.K.SINGH,B.PLUVINAGE,M.A.HIGGINS,A.B.DALIA,M.FLYNN,A.R.LLOYD, AUTHOR 2 J.N.WEISER,K.A.STUBBS,A.B.BORASTON,S.J.KING REVDAT 3 08-MAY-24 4CU9 1 REMARK LINK REVDAT 2 24-SEP-14 4CU9 1 JRNL REVDAT 1 20-AUG-14 4CU9 0 JRNL AUTH A.K.SINGH,B.PLUVINAGE,M.A.HIGGINS,A.B.DALIA,S.A.WOODIGA, JRNL AUTH 2 M.FLYNN,A.R.LLOYD,J.N.WEISER,K.A.STUBBS,A.B.BORASTON, JRNL AUTH 3 S.J.KING JRNL TITL UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY JRNL TITL 2 INTRICATE STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA. JRNL REF PLOS PATHOG. V. 10 04364 2014 JRNL REFN ISSN 1553-7366 JRNL PMID 25210925 JRNL DOI 10.1371/JOURNAL.PPAT.1004364 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 27756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1481 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1985 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.1770 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2824 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 248 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.141 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.686 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2927 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2615 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3970 ; 1.471 ; 1.923 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6013 ; 0.823 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 360 ; 6.268 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;38.500 ;24.156 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 444 ;12.831 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;12.498 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 403 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3425 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 718 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1440 ; 1.385 ; 1.580 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1439 ; 1.386 ; 1.578 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1800 ; 2.281 ; 2.360 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1487 ; 1.766 ; 1.782 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U REMARK 3 VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4CU9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1290060051. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97874 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29320 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 45.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.12500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.58500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.64000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.58500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.12500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.64000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 1813 REMARK 465 VAL A 1814 REMARK 465 PRO A 1815 REMARK 465 ARG A 1816 REMARK 465 GLY A 1817 REMARK 465 SER A 1818 REMARK 465 HIS A 1819 REMARK 465 MET A 1820 REMARK 465 ASN A 1821 REMARK 465 PRO A 1822 REMARK 465 ASN A 1823 REMARK 465 TYR A 1824 REMARK 465 ASP A 1825 REMARK 465 GLU B 1998 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A1826 CG CD OE1 OE2 REMARK 470 LEU B1813 CG CD1 CD2 REMARK 470 VAL B1814 CG1 CG2 REMARK 470 ASP B1825 CG OD1 OD2 REMARK 470 GLU B1826 CG CD OE1 OE2 REMARK 470 ASN B1827 CG OD1 ND2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 1841 CE NZ REMARK 480 LYS A 1969 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2085 O HOH A 2086 1.94 REMARK 500 O SER A 1997 O HOH A 2137 2.15 REMARK 500 OE1 GLU B 1857 O HOH B 2025 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A1841 CD LYS A1841 CE -0.686 REMARK 500 LYS A1969 CD LYS A1969 CE -0.543 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A1841 CG - CD - CE ANGL. DEV. = 47.3 DEGREES REMARK 500 LYS A1841 CD - CE - NZ ANGL. DEV. = 20.9 DEGREES REMARK 500 LYS A1969 CG - CD - CE ANGL. DEV. = 38.6 DEGREES REMARK 500 LYS A1969 CD - CE - NZ ANGL. DEV. = -29.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A1828 -166.42 -102.97 REMARK 500 ASP A1901 -158.36 -157.53 REMARK 500 ASN A1928 53.66 -148.76 REMARK 500 GLU A1933 52.45 -147.82 REMARK 500 TYR B1925 71.15 -103.51 REMARK 500 ASN B1928 52.01 -147.81 REMARK 500 GLU B1933 56.08 -147.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2999 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A1849 O REMARK 620 2 ASP A1852 OD1 83.5 REMARK 620 3 ASP A1854 O 174.0 91.8 REMARK 620 4 ILE A1989 O 84.0 165.9 101.1 REMARK 620 5 GLU A1990 OE1 95.7 87.3 87.7 87.6 REMARK 620 6 HOH A2028 O 97.4 96.2 79.4 91.7 166.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2998 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B1849 O REMARK 620 2 ASP B1852 OD1 82.5 REMARK 620 3 ASP B1854 O 172.1 89.8 REMARK 620 4 ILE B1989 O 84.3 166.4 103.5 REMARK 620 5 GLU B1990 OE1 93.5 85.7 87.8 92.1 REMARK 620 6 HOH B2018 O 102.1 95.4 76.6 90.3 164.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 2998 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 3000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 3002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CU6 RELATED DB: PDB REMARK 900 UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE REMARK 900 STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA REMARK 900 RELATED ID: 4CU7 RELATED DB: PDB REMARK 900 UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE REMARK 900 STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA REMARK 900 RELATED ID: 4CU8 RELATED DB: PDB REMARK 900 UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE REMARK 900 STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA REMARK 900 RELATED ID: 4CUA RELATED DB: PDB REMARK 900 UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE REMARK 900 STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA REMARK 900 RELATED ID: 4CUB RELATED DB: PDB REMARK 900 UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE REMARK 900 STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA REMARK 900 RELATED ID: 4CUC RELATED DB: PDB REMARK 900 UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE REMARK 900 STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA. DBREF 4CU9 A 1822 1998 UNP Q8DQP4 Q8DQP4_STRR6 1822 1998 DBREF 4CU9 B 1822 1998 UNP Q8DQP4 Q8DQP4_STRR6 1822 1998 SEQADV 4CU9 LEU A 1813 UNP Q8DQP4 EXPRESSION TAG SEQADV 4CU9 VAL A 1814 UNP Q8DQP4 EXPRESSION TAG SEQADV 4CU9 PRO A 1815 UNP Q8DQP4 EXPRESSION TAG SEQADV 4CU9 ARG A 1816 UNP Q8DQP4 EXPRESSION TAG SEQADV 4CU9 GLY A 1817 UNP Q8DQP4 EXPRESSION TAG SEQADV 4CU9 SER A 1818 UNP Q8DQP4 EXPRESSION TAG SEQADV 4CU9 HIS A 1819 UNP Q8DQP4 EXPRESSION TAG SEQADV 4CU9 MET A 1820 UNP Q8DQP4 EXPRESSION TAG SEQADV 4CU9 ASN A 1821 UNP Q8DQP4 EXPRESSION TAG SEQADV 4CU9 ALA A 1972 UNP Q8DQP4 VAL 1972 CONFLICT SEQADV 4CU9 LEU B 1813 UNP Q8DQP4 EXPRESSION TAG SEQADV 4CU9 VAL B 1814 UNP Q8DQP4 EXPRESSION TAG SEQADV 4CU9 PRO B 1815 UNP Q8DQP4 EXPRESSION TAG SEQADV 4CU9 ARG B 1816 UNP Q8DQP4 EXPRESSION TAG SEQADV 4CU9 GLY B 1817 UNP Q8DQP4 EXPRESSION TAG SEQADV 4CU9 SER B 1818 UNP Q8DQP4 EXPRESSION TAG SEQADV 4CU9 HIS B 1819 UNP Q8DQP4 EXPRESSION TAG SEQADV 4CU9 MET B 1820 UNP Q8DQP4 EXPRESSION TAG SEQADV 4CU9 ASN B 1821 UNP Q8DQP4 EXPRESSION TAG SEQADV 4CU9 ALA B 1972 UNP Q8DQP4 VAL 1972 CONFLICT SEQRES 1 A 186 LEU VAL PRO ARG GLY SER HIS MET ASN PRO ASN TYR ASP SEQRES 2 A 186 GLU ASN SER ASN GLN ALA PHE ALA SER ALA THR ASN ASP SEQRES 3 A 186 ILE ASP LYS ASN SER HIS ASP ARG VAL ASP TYR LEU ASN SEQRES 4 A 186 ASP GLY ASP HIS SER GLU ASN ARG ARG TRP THR ASN TRP SEQRES 5 A 186 SER PRO THR PRO SER SER ASN PRO GLU VAL SER ALA GLY SEQRES 6 A 186 VAL ILE PHE ARG GLU ASN GLY LYS ILE VAL GLU ARG THR SEQRES 7 A 186 VAL ALA GLN ALA LYS LEU HIS PHE PHE ALA ASP SER GLY SEQRES 8 A 186 THR ASP ALA PRO SER LYS LEU VAL LEU GLU ARG TYR VAL SEQRES 9 A 186 GLY PRO GLY PHE GLU VAL PRO THR TYR TYR SER ASN TYR SEQRES 10 A 186 GLN ALA TYR GLU SER GLY HIS PRO PHE ASN ASN PRO GLU SEQRES 11 A 186 ASN TRP GLU ALA VAL PRO TYR ARG ALA ASP LYS ASP ILE SEQRES 12 A 186 ALA ALA GLY ASP GLU ILE ASN VAL THR PHE LYS ALA VAL SEQRES 13 A 186 LYS ALA LYS ALA MET ARG TRP ARG MET GLU ARG LYS ALA SEQRES 14 A 186 ASP LYS SER GLY VAL ALA MET ILE GLU MET THR PHE LEU SEQRES 15 A 186 ALA PRO SER GLU SEQRES 1 B 186 LEU VAL PRO ARG GLY SER HIS MET ASN PRO ASN TYR ASP SEQRES 2 B 186 GLU ASN SER ASN GLN ALA PHE ALA SER ALA THR ASN ASP SEQRES 3 B 186 ILE ASP LYS ASN SER HIS ASP ARG VAL ASP TYR LEU ASN SEQRES 4 B 186 ASP GLY ASP HIS SER GLU ASN ARG ARG TRP THR ASN TRP SEQRES 5 B 186 SER PRO THR PRO SER SER ASN PRO GLU VAL SER ALA GLY SEQRES 6 B 186 VAL ILE PHE ARG GLU ASN GLY LYS ILE VAL GLU ARG THR SEQRES 7 B 186 VAL ALA GLN ALA LYS LEU HIS PHE PHE ALA ASP SER GLY SEQRES 8 B 186 THR ASP ALA PRO SER LYS LEU VAL LEU GLU ARG TYR VAL SEQRES 9 B 186 GLY PRO GLY PHE GLU VAL PRO THR TYR TYR SER ASN TYR SEQRES 10 B 186 GLN ALA TYR GLU SER GLY HIS PRO PHE ASN ASN PRO GLU SEQRES 11 B 186 ASN TRP GLU ALA VAL PRO TYR ARG ALA ASP LYS ASP ILE SEQRES 12 B 186 ALA ALA GLY ASP GLU ILE ASN VAL THR PHE LYS ALA VAL SEQRES 13 B 186 LYS ALA LYS ALA MET ARG TRP ARG MET GLU ARG LYS ALA SEQRES 14 B 186 ASP LYS SER GLY VAL ALA MET ILE GLU MET THR PHE LEU SEQRES 15 B 186 ALA PRO SER GLU HET CA A2999 1 HET EDO A3000 4 HET CA B2998 1 HET EDO B2999 4 HET EDO B3000 4 HET EDO B3001 4 HET EDO B3002 4 HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CA 2(CA 2+) FORMUL 4 EDO 5(C2 H6 O2) FORMUL 10 HOH *248(H2 O) HELIX 1 1 ARG A 1846 ASP A 1852 5 7 HELIX 2 2 ASN A 1928 GLU A 1933 1 6 HELIX 3 3 HIS A 1936 ASN A 1940 5 5 HELIX 4 4 ASN A 1940 GLU A 1942 5 3 HELIX 5 5 ARG B 1846 ASP B 1852 5 7 HELIX 6 6 ASN B 1928 GLU B 1933 1 6 HELIX 7 7 HIS B 1936 ASN B 1940 5 5 HELIX 8 8 ASN B 1940 GLU B 1942 5 3 SHEET 1 AA 5 GLN A1830 ALA A1833 0 SHEET 2 AA 5 GLU A1873 ILE A1879 -1 O GLY A1877 N PHE A1832 SHEET 3 AA 5 ALA A1972 GLU A1978 -1 O MET A1973 N VAL A1878 SHEET 4 AA 5 LYS A1909 TYR A1915 -1 O LYS A1909 N GLU A1978 SHEET 5 AA 5 TRP A1944 VAL A1947 -1 O GLU A1945 N ARG A1914 SHEET 1 AB 2 TRP A1861 THR A1862 0 SHEET 2 AB 2 GLY A1985 LEU A1994 -1 O MET A1988 N TRP A1861 SHEET 1 AC 2 THR A1904 ASP A1905 0 SHEET 2 AC 2 GLY A1985 LEU A1994 -1 O GLY A1985 N ASP A1905 SHEET 1 AD 5 ARG A1950 ALA A1951 0 SHEET 2 AD 5 ILE A1961 ALA A1970 -1 O THR A1964 N ARG A1950 SHEET 3 AD 5 ARG A1889 PHE A1898 -1 O ARG A1889 N ALA A1970 SHEET 4 AD 5 GLY A1985 LEU A1994 -1 N ILE A1989 O HIS A1897 SHEET 5 AD 5 THR A1904 ASP A1905 -1 O ASP A1905 N ALA A1987 SHEET 1 AE 5 ARG A1950 ALA A1951 0 SHEET 2 AE 5 ILE A1961 ALA A1970 -1 O THR A1964 N ARG A1950 SHEET 3 AE 5 ARG A1889 PHE A1898 -1 O ARG A1889 N ALA A1970 SHEET 4 AE 5 GLY A1985 LEU A1994 -1 N ILE A1989 O HIS A1897 SHEET 5 AE 5 TRP A1861 THR A1862 -1 O TRP A1861 N MET A1988 SHEET 1 AF 2 ARG A1881 GLU A1882 0 SHEET 2 AF 2 LYS A1885 ILE A1886 -1 O LYS A1885 N GLU A1882 SHEET 1 BA 5 GLN B1830 ALA B1833 0 SHEET 2 BA 5 GLU B1873 ILE B1879 -1 O GLY B1877 N PHE B1832 SHEET 3 BA 5 ALA B1972 GLU B1978 -1 O MET B1973 N VAL B1878 SHEET 4 BA 5 LYS B1909 TYR B1915 -1 O LYS B1909 N GLU B1978 SHEET 5 BA 5 TRP B1944 VAL B1947 -1 O GLU B1945 N ARG B1914 SHEET 1 BB 2 TRP B1861 THR B1862 0 SHEET 2 BB 2 GLY B1985 LEU B1994 -1 O MET B1988 N TRP B1861 SHEET 1 BC 2 THR B1904 ASP B1905 0 SHEET 2 BC 2 GLY B1985 LEU B1994 -1 O GLY B1985 N ASP B1905 SHEET 1 BD 5 ARG B1950 ALA B1951 0 SHEET 2 BD 5 ILE B1961 ALA B1970 -1 O THR B1964 N ARG B1950 SHEET 3 BD 5 ARG B1889 PHE B1898 -1 O ARG B1889 N ALA B1970 SHEET 4 BD 5 GLY B1985 LEU B1994 -1 N ILE B1989 O HIS B1897 SHEET 5 BD 5 THR B1904 ASP B1905 -1 O ASP B1905 N ALA B1987 SHEET 1 BE 5 ARG B1950 ALA B1951 0 SHEET 2 BE 5 ILE B1961 ALA B1970 -1 O THR B1964 N ARG B1950 SHEET 3 BE 5 ARG B1889 PHE B1898 -1 O ARG B1889 N ALA B1970 SHEET 4 BE 5 GLY B1985 LEU B1994 -1 N ILE B1989 O HIS B1897 SHEET 5 BE 5 TRP B1861 THR B1862 -1 O TRP B1861 N MET B1988 SHEET 1 BF 2 ARG B1881 GLU B1882 0 SHEET 2 BF 2 LYS B1885 ILE B1886 -1 O LYS B1885 N GLU B1882 LINK O TYR A1849 CA CA A2999 1555 1555 2.24 LINK OD1 ASP A1852 CA CA A2999 1555 1555 2.37 LINK O ASP A1854 CA CA A2999 1555 1555 2.36 LINK O ILE A1989 CA CA A2999 1555 1555 2.30 LINK OE1 GLU A1990 CA CA A2999 1555 1555 2.24 LINK O HOH A2028 CA CA A2999 1555 1555 2.31 LINK O TYR B1849 CA CA B2998 1555 1555 2.29 LINK OD1 ASP B1852 CA CA B2998 1555 1555 2.38 LINK O ASP B1854 CA CA B2998 1555 1555 2.28 LINK O ILE B1989 CA CA B2998 1555 1555 2.33 LINK OE1 GLU B1990 CA CA B2998 1555 1555 2.19 LINK O HOH B2018 CA CA B2998 1555 1555 2.30 CISPEP 1 SER A 1997 GLU A 1998 0 17.91 CISPEP 2 ASP B 1825 GLU B 1826 0 -18.43 SITE 1 AC1 6 TYR A1849 ASP A1852 ASP A1854 ILE A1989 SITE 2 AC1 6 GLU A1990 HOH A2028 SITE 1 AC2 6 TYR B1849 ASP B1852 ASP B1854 ILE B1989 SITE 2 AC2 6 GLU B1990 HOH B2018 SITE 1 AC3 7 TYR B1929 PHE B1938 ASN B1939 PRO B1941 SITE 2 AC3 7 ARG B1974 HOH B2045 HOH B2046 SITE 1 AC4 7 TYR A1929 PHE A1938 ASN A1939 PRO A1941 SITE 2 AC4 7 ARG A1974 HOH A2049 HOH A2050 SITE 1 AC5 4 ASN A1883 PHE B1880 ARG B1889 PHE B1993 SITE 1 AC6 4 ASP B1845 ARG B1860 THR B1862 ASP B1901 SITE 1 AC7 5 PRO B1868 ALA B1981 ASP B1982 LYS B1983 SITE 2 AC7 5 SER B1984 CRYST1 38.250 69.280 121.170 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026144 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014434 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008253 0.00000