HEADER TRANSCRIPTION 18-MAR-14 4CUD TITLE HUMAN NOTCH1 EGF DOMAINS 11-13 MUTANT FUCOSYLATED AT T466 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EGF 11-13, RESIDUES 410-526; COMPND 5 SYNONYM: NOTCH 1, HN1, TRANSLOCATION-ASSOCIATED NOTCH PROTEIN TAN-1; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: O-FUCOSE MONOSACCHARIDE AT T466 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PQE30 KEYWDS TRANSCRIPTION, METAL-BINDING, TRANSMEMBRANE, DEVELOPMENTAL, PROTEIN, KEYWDS 2 NOTCH SIGNALING PATHWAY, DIFFERENTIATION, PHOSPHORYLATION, EGF-LIKE KEYWDS 3 DOMAIN, REGULATION, RECEPTOR, ACTIVATOR, ANK REPEAT, SIGNALLING, KEYWDS 4 GLYCOPROTEIN, EXTRACELLULAR, EGF, JAGGED, NUCLEUS, MEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR P.TAYLOR,H.TAKEUCHI,D.SHEPPARD,C.CHILLAKURI,S.M.LEA,R.S.HALTIWANGER, AUTHOR 2 P.A.HANDFORD REVDAT 5 20-DEC-23 4CUD 1 HETSYN REVDAT 4 29-JUL-20 4CUD 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 07-FEB-18 4CUD 1 AUTHOR REVDAT 2 04-JUN-14 4CUD 1 JRNL REVDAT 1 21-MAY-14 4CUD 0 JRNL AUTH P.TAYLOR,H.TAKEUCHI,D.SHEPPARD,C.CHILLAKURI,S.M.LEA, JRNL AUTH 2 R.S.HALTIWANGER,P.A.HANDFORD JRNL TITL FRINGE-MEDIATED EXTENSION OF O-LINKED FUCOSE IN THE JRNL TITL 2 LIGAND-BINDING REGION OF NOTCH1 INCREASES BINDING TO JRNL TITL 3 MAMMALIAN NOTCH LIGANDS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 7290 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 24803430 JRNL DOI 10.1073/PNAS.1319683111 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 3 NUMBER OF REFLECTIONS : 10837 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 540 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 684 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 914 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.164 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.319 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 951 ; 0.006 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1297 ; 1.112 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 121 ; 5.623 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 48 ;39.396 ;26.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 146 ;11.661 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;24.570 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 142 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 734 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 454 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 660 ; 0.032 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 26 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 14 ; 0.096 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.220 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.107 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.064 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4CUD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1290059191. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.917 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10837 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 24.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 0.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 2VJ3 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.24400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 188.48800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 188.48800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 94.24400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 42.43500 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 -24.49986 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A1534 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 409 REMARK 465 ALA A 410 REMARK 465 GLN A 411 REMARK 465 ASP A 534 REMARK 465 ALA A 535 REMARK 465 GLN A 536 REMARK 465 LYS A 537 REMARK 465 MET A 538 REMARK 465 VAL A 539 REMARK 465 TRP A 540 REMARK 465 ASN A 541 REMARK 465 HIS A 542 REMARK 465 ARG A 543 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 435 -151.16 -149.78 REMARK 500 LYS A 508 -162.62 -129.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1533 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 412 OD1 REMARK 620 2 ASP A 412 OD2 43.6 REMARK 620 3 VAL A 413 O 79.2 72.8 REMARK 620 4 GLU A 415 OE1 136.9 139.2 69.0 REMARK 620 5 ASN A 431 OD1 123.9 80.6 91.4 86.2 REMARK 620 6 THR A 432 O 78.6 72.5 145.1 142.2 79.1 REMARK 620 7 SER A 435 O 130.6 144.2 141.9 73.0 88.6 72.0 REMARK 620 8 HOH A2004 O 67.1 109.1 83.3 80.6 166.8 112.0 88.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1531 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 452 OD1 REMARK 620 2 VAL A 453 O 76.9 REMARK 620 3 GLU A 455 OE1 143.5 77.2 REMARK 620 4 ASP A 469 OD1 128.0 86.5 75.2 REMARK 620 5 GLN A 470 O 123.3 149.2 73.6 95.3 REMARK 620 6 HOH A2012 O 74.7 86.4 78.3 153.5 78.3 REMARK 620 7 HOH A2015 O 76.0 132.2 140.2 80.2 78.2 122.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1532 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 490 OD1 REMARK 620 2 THR A 491 O 85.1 REMARK 620 3 GLU A 493 OE1 152.8 84.2 REMARK 620 4 ASP A 507 OD1 133.3 86.2 70.7 REMARK 620 5 ASP A 507 OD2 85.2 98.4 121.1 51.0 REMARK 620 6 LYS A 508 O 103.6 168.3 84.5 93.2 90.2 REMARK 620 7 HOH A2032 O 79.7 84.2 74.4 144.6 164.4 89.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1534 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 511 OE2 REMARK 620 2 GLU A 511 OE2 134.9 REMARK 620 3 GLU A 511 OE1 93.6 44.2 REMARK 620 4 GLU A 511 OE1 44.2 93.6 62.9 REMARK 620 5 HIS A 523 NE2 97.4 95.2 86.6 123.1 REMARK 620 6 HIS A 523 NE2 95.2 97.4 123.0 86.6 146.8 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CUE RELATED DB: PDB REMARK 900 HUMAN NOTCH-1 EGFS 11-13 REMARK 900 RELATED ID: 4CUF RELATED DB: PDB REMARK 900 HUMAN NOTCH-1 EGFS 11-13 FUCOSE DBREF 4CUD A 410 526 UNP P46531 NOTC1_HUMAN 410 526 SEQADV 4CUD SER A 409 UNP P46531 EXPRESSION TAG SEQADV 4CUD VAL A 527 UNP P46531 EXPRESSION TAG SEQADV 4CUD ASP A 528 UNP P46531 EXPRESSION TAG SEQADV 4CUD LEU A 529 UNP P46531 EXPRESSION TAG SEQADV 4CUD HIS A 530 UNP P46531 EXPRESSION TAG SEQADV 4CUD HIS A 531 UNP P46531 EXPRESSION TAG SEQADV 4CUD ILE A 532 UNP P46531 EXPRESSION TAG SEQADV 4CUD LEU A 533 UNP P46531 EXPRESSION TAG SEQADV 4CUD ASP A 534 UNP P46531 EXPRESSION TAG SEQADV 4CUD ALA A 535 UNP P46531 EXPRESSION TAG SEQADV 4CUD GLN A 536 UNP P46531 EXPRESSION TAG SEQADV 4CUD LYS A 537 UNP P46531 EXPRESSION TAG SEQADV 4CUD MET A 538 UNP P46531 EXPRESSION TAG SEQADV 4CUD VAL A 539 UNP P46531 EXPRESSION TAG SEQADV 4CUD TRP A 540 UNP P46531 EXPRESSION TAG SEQADV 4CUD ASN A 541 UNP P46531 EXPRESSION TAG SEQADV 4CUD HIS A 542 UNP P46531 EXPRESSION TAG SEQADV 4CUD ARG A 543 UNP P46531 EXPRESSION TAG SEQRES 1 A 135 SER ALA GLN ASP VAL ASP GLU CYS SER LEU GLY ALA ASN SEQRES 2 A 135 PRO CYS GLU HIS ALA GLY LYS CYS ILE ASN THR LEU GLY SEQRES 3 A 135 SER PHE GLU CYS GLN CYS LEU GLN GLY TYR THR GLY PRO SEQRES 4 A 135 ARG CYS GLU ILE ASP VAL ASN GLU CYS VAL SER ASN PRO SEQRES 5 A 135 CYS GLN ASN ASP ALA THR CYS LEU ASP GLN ILE GLY GLU SEQRES 6 A 135 PHE GLN CYS ILE CYS MET PRO GLY TYR GLU GLY VAL HIS SEQRES 7 A 135 CYS GLU VAL ASN THR ASP GLU CYS ALA SER SER PRO CYS SEQRES 8 A 135 LEU HIS ASN GLY ARG CYS LEU ASP LYS ILE ASN GLU PHE SEQRES 9 A 135 GLN CYS GLU CYS PRO THR GLY PHE THR GLY HIS LEU CYS SEQRES 10 A 135 GLN VAL ASP LEU HIS HIS ILE LEU ASP ALA GLN LYS MET SEQRES 11 A 135 VAL TRP ASN HIS ARG MODRES 4CUD THR A 466 THR GLYCOSYLATION SITE HET FUC A 1 10 HET CA A1531 1 HET CA A1532 1 HET CA A1533 1 HET CA A1534 1 HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 2 FUC C6 H12 O5 FORMUL 3 CA 4(CA 2+) FORMUL 7 HOH *56(H2 O) HELIX 1 1 ASP A 414 LEU A 418 5 5 SHEET 1 AA 2 LYS A 428 ASN A 431 0 SHEET 2 AA 2 PHE A 436 GLN A 439 -1 O GLU A 437 N ILE A 430 SHEET 1 AB 2 TYR A 444 THR A 445 0 SHEET 2 AB 2 ILE A 451 ASP A 452 -1 O ILE A 451 N THR A 445 SHEET 1 AC 2 THR A 466 GLN A 470 0 SHEET 2 AC 2 GLU A 473 ILE A 477 -1 O GLU A 473 N GLN A 470 SHEET 1 AD 2 TYR A 482 GLU A 483 0 SHEET 2 AD 2 VAL A 489 ASN A 490 -1 O VAL A 489 N GLU A 483 SHEET 1 AE 2 ARG A 504 ASP A 507 0 SHEET 2 AE 2 PHE A 512 GLU A 515 -1 O GLN A 513 N LEU A 506 SHEET 1 AF 2 PHE A 520 THR A 521 0 SHEET 2 AF 2 VAL A 527 ASP A 528 -1 O VAL A 527 N THR A 521 SSBOND 1 CYS A 416 CYS A 429 1555 1555 2.04 SSBOND 2 CYS A 423 CYS A 438 1555 1555 2.03 SSBOND 3 CYS A 440 CYS A 449 1555 1555 2.04 SSBOND 4 CYS A 456 CYS A 467 1555 1555 2.04 SSBOND 5 CYS A 461 CYS A 476 1555 1555 2.02 SSBOND 6 CYS A 478 CYS A 487 1555 1555 2.05 SSBOND 7 CYS A 494 CYS A 505 1555 1555 2.03 SSBOND 8 CYS A 499 CYS A 514 1555 1555 2.03 SSBOND 9 CYS A 516 CYS A 525 1555 1555 2.03 LINK C1 FUC A 1 OG1 THR A 466 1555 1555 1.45 LINK OD1 ASP A 412 CA CA A1533 1555 1555 2.60 LINK OD2 ASP A 412 CA CA A1533 1555 1555 3.13 LINK O VAL A 413 CA CA A1533 1555 1555 2.47 LINK OE1 GLU A 415 CA CA A1533 1555 1555 2.43 LINK OD1 ASN A 431 CA CA A1533 1555 1555 2.31 LINK O THR A 432 CA CA A1533 1555 1555 2.39 LINK O SER A 435 CA CA A1533 1555 1555 2.41 LINK OD1 ASP A 452 CA CA A1531 1555 1555 2.41 LINK O VAL A 453 CA CA A1531 1555 1555 2.29 LINK OE1 GLU A 455 CA CA A1531 1555 1555 2.40 LINK OD1 ASP A 469 CA CA A1531 1555 1555 2.42 LINK O GLN A 470 CA CA A1531 1555 1555 2.40 LINK OD1 ASN A 490 CA CA A1532 1555 1555 2.31 LINK O THR A 491 CA CA A1532 1555 1555 2.20 LINK OE1 GLU A 493 CA CA A1532 1555 1555 2.34 LINK OD1 ASP A 507 CA CA A1532 1555 1555 2.58 LINK OD2 ASP A 507 CA CA A1532 1555 1555 2.48 LINK O LYS A 508 CA CA A1532 1555 1555 2.26 LINK OE2 GLU A 511 CA CA A1534 1555 1555 2.36 LINK OE2 GLU A 511 CA CA A1534 4645 1555 2.36 LINK OE1 GLU A 511 CA CA A1534 4645 1555 3.15 LINK OE1 GLU A 511 CA CA A1534 1555 1555 3.15 LINK NE2 HIS A 523 CA CA A1534 1555 1555 2.68 LINK NE2 HIS A 523 CA CA A1534 4645 1555 2.68 LINK CA CA A1531 O HOH A2012 1555 1555 2.41 LINK CA CA A1531 O HOH A2015 1555 1555 2.52 LINK CA CA A1532 O HOH A2032 1555 1555 2.40 LINK CA CA A1533 O HOH A2004 1555 1555 2.46 CRYST1 28.290 28.290 282.732 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.035348 0.020408 0.000000 0.00000 SCALE2 0.000000 0.040817 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003537 0.00000