HEADER OXIDOREDUCTASE 20-MAR-14 4CUO TITLE BANYAN PEROXIDASE WITH GLYCOSYLATION CAVEAT 4CUO NAG A 1320 HAS WRONG CHIRALITY AT ATOM C1 NAG A 1324 HAS CAVEAT 2 4CUO WRONG CHIRALITY AT ATOM C1 NAG1320 AND NAG1324 HAVE THE CAVEAT 3 4CUO WRONG CHIRALITY AT C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BANYAN PEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.11.1.7 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FICUS BENGHALENSIS; SOURCE 3 ORGANISM_COMMON: BANYAN TREE; SOURCE 4 ORGANISM_TAXID: 309271; SOURCE 5 SECRETION: LATEX KEYWDS OXIDOREDUCTASE, CLASS III, GLYCOSYLATION, SUCCINIMIDE EXPDTA X-RAY DIFFRACTION AUTHOR G.J.PALM,A.SHARMA,W.HINRICHS REVDAT 5 15-NOV-23 4CUO 1 HETSYN LINK ATOM REVDAT 4 29-JUL-20 4CUO 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 17-JUL-19 4CUO 1 REMARK LINK REVDAT 2 01-OCT-14 4CUO 1 JRNL REVDAT 1 23-JUL-14 4CUO 0 JRNL AUTH G.J.PALM,A.SHARMA,M.KUMARI,S.PANJIKAR,D.ALBRECHT, JRNL AUTH 2 M.V.JAGANNADHAM,W.HINRICHS JRNL TITL POST-TRANSLATIONAL MODIFICATION AND EXTENDED GLYCOSYLATION JRNL TITL 2 PATTERN OF A PLANT LATEX PEROXIDASE OF NATIVE SOURCE JRNL TITL 3 CHARACTERIZED BY X-RAY CRYSTALLOGRAPHY. JRNL REF FEBS J. V. 281 4319 2014 JRNL REFN ISSN 1742-464X JRNL PMID 24980207 JRNL DOI 10.1111/FEBS.12900 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.SHARMA,G.J.PALM,M.KUMARI,S.PANJIKAR,M.V.JAGANNADHAM, REMARK 1 AUTH 2 W.HINRICHS REMARK 1 TITL PURIFICATION, CRYSTALLIZATION AND PRELIMINARY REMARK 1 TITL 2 CRYSTALLOGRAPHIC ANALYSIS OF BANYAN PEROXIDASE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 68 931 2012 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 22869125 REMARK 1 DOI 10.1107/S1744309112026097 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 57238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3049 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4084 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 206 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2315 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 302 REMARK 3 SOLVENT ATOMS : 321 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.888 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2724 ; 0.021 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3750 ; 2.145 ; 2.076 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 323 ; 6.096 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;33.137 ;25.315 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 381 ;12.264 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;20.601 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 473 ; 0.148 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2034 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1244 ; 1.943 ; 2.076 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1556 ; 2.845 ; 3.108 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1480 ; 3.247 ; 2.677 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 7 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 209 REMARK 3 RESIDUE RANGE : A 1307 A 1309 REMARK 3 RESIDUE RANGE : A 1317 A 1323 REMARK 3 RESIDUE RANGE : A 1328 A 1329 REMARK 3 RESIDUE RANGE : A 1331 A 1333 REMARK 3 RESIDUE RANGE : A 1335 A 1335 REMARK 3 RESIDUE RANGE : A 1337 A 1337 REMARK 3 ORIGIN FOR THE GROUP (A): 38.1990 16.0400 12.3460 REMARK 3 T TENSOR REMARK 3 T11: 0.2355 T22: 0.0835 REMARK 3 T33: 0.0118 T12: -0.0661 REMARK 3 T13: -0.0089 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 0.4917 L22: 0.6408 REMARK 3 L33: 3.2286 L12: 0.0836 REMARK 3 L13: -0.5127 L23: -0.5876 REMARK 3 S TENSOR REMARK 3 S11: -0.0977 S12: 0.0676 S13: 0.0558 REMARK 3 S21: 0.0522 S22: 0.1234 S23: 0.0548 REMARK 3 S31: -0.1566 S32: -0.1833 S33: -0.0257 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 7 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 210 A 299 REMARK 3 RESIDUE RANGE : A 1324 A 1325 REMARK 3 RESIDUE RANGE : A 1326 A 1326 REMARK 3 RESIDUE RANGE : A 1330 A 1330 REMARK 3 RESIDUE RANGE : A 1334 A 1334 REMARK 3 RESIDUE RANGE : A 1336 A 1336 REMARK 3 RESIDUE RANGE : A 1338 A 1338 REMARK 3 ORIGIN FOR THE GROUP (A): 38.1990 16.0400 12.3460 REMARK 3 T TENSOR REMARK 3 T11: 0.2367 T22: 0.0943 REMARK 3 T33: 0.0141 T12: -0.0272 REMARK 3 T13: 0.0010 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.5249 L22: 0.6659 REMARK 3 L33: 3.5442 L12: 0.4450 REMARK 3 L13: -0.3057 L23: -0.5044 REMARK 3 S TENSOR REMARK 3 S11: -0.1193 S12: 0.0553 S13: 0.0723 REMARK 3 S21: 0.0508 S22: 0.1152 S23: 0.0732 REMARK 3 S31: -0.1156 S32: -0.1543 S33: 0.0041 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 300 A 306 REMARK 3 ORIGIN FOR THE GROUP (A): 38.1990 16.0400 12.3460 REMARK 3 T TENSOR REMARK 3 T11: 0.4000 T22: 0.4463 REMARK 3 T33: 0.2501 T12: -0.0429 REMARK 3 T13: 0.0737 T23: 0.1650 REMARK 3 L TENSOR REMARK 3 L11: 4.9233 L22: 1.3655 REMARK 3 L33: 2.1125 L12: -0.8491 REMARK 3 L13: -1.2246 L23: -1.2018 REMARK 3 S TENSOR REMARK 3 S11: -0.2964 S12: -0.7548 S13: -0.2547 REMARK 3 S21: 0.1787 S22: 0.5095 S23: 0.3495 REMARK 3 S31: -0.0578 S32: -0.0888 S33: -0.2131 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1310 A 1316 REMARK 3 ORIGIN FOR THE GROUP (A): 52.8370 38.3110 14.3470 REMARK 3 T TENSOR REMARK 3 T11: 0.3939 T22: 0.2282 REMARK 3 T33: 0.0717 T12: -0.2356 REMARK 3 T13: 0.0092 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 4.7607 L22: 6.4976 REMARK 3 L33: 9.0620 L12: -0.3130 REMARK 3 L13: -3.0110 L23: 3.2853 REMARK 3 S TENSOR REMARK 3 S11: 0.1183 S12: -0.2428 S13: 0.2058 REMARK 3 S21: -0.0397 S22: -0.0652 S23: 0.2756 REMARK 3 S31: -0.2754 S32: -0.3807 S33: -0.0532 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.60 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U REMARK 3 VALUES WITH TLS ADDED. NO DNA SEQUENCE WAS AVAILABLE FOR THIS REMARK 3 PROTEIN REMARK 4 REMARK 4 4CUO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1290059866. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X12 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0, 1.44163 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60369 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.99000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTO-RICKSHAW REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 UL PROTEIN (30 MG/ML IN 20 MM REMARK 280 TRIS/HCL, PH 8.0) PLUS 1 UL RESERVOIR (1.3 M AMMONIUM SULFATE, REMARK 280 1.0 M LITHIUMSULFATE), CRYOSOLUTION: RESERVOIR INCLUDING 20% REMARK 280 GLYCEROL, XE-DERIVATIZATION: 1 MIN 4 MPA XE FOR CRYSTAL IN REMARK 280 CRYOSOLUTION. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 109.73067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.86533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 54.86533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 109.73067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 54.86533 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 256 C2 NAG A 1325 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 73 CB SER A 73 OG -0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 125 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 173 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 THR A 289 O - C - N ANGL. DEV. = -14.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 11 74.61 -153.99 REMARK 500 ASP A 50 20.73 -145.79 REMARK 500 SER A 73 -58.38 -141.11 REMARK 500 PHE A 179 -3.82 -143.44 REMARK 500 THR A 289 -155.83 -134.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR A 289 -13.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1327 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 43 O REMARK 620 2 ASP A 43 OD1 78.8 REMARK 620 3 VAL A 46 O 91.4 164.8 REMARK 620 4 GLY A 48 O 80.4 87.7 102.3 REMARK 620 5 ASP A 50 OD1 147.4 74.7 118.1 79.9 REMARK 620 6 SER A 52 OG 120.9 84.0 91.2 154.8 74.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1328 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 43 OD1 REMARK 620 2 ASP A 43 O 82.0 REMARK 620 3 VAL A 46 O 159.2 78.8 REMARK 620 4 GLY A 48 O 84.8 68.5 80.9 REMARK 620 5 ASP A 50 OD1 83.0 139.2 106.7 72.5 REMARK 620 6 SER A 52 OG 105.7 134.9 93.6 154.7 85.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1307 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 169 NE2 REMARK 620 2 HEM A1307 NA 100.4 REMARK 620 3 HEM A1307 NB 95.5 90.4 REMARK 620 4 HEM A1307 NC 93.3 166.3 87.3 REMARK 620 5 HEM A1307 ND 97.0 88.6 167.4 90.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1326 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 170 OG1 REMARK 620 2 THR A 170 O 72.3 REMARK 620 3 ASP A 221 OD2 84.8 85.4 REMARK 620 4 THR A 224 OG1 132.8 154.0 90.0 REMARK 620 5 THR A 224 O 151.6 80.0 86.9 74.2 REMARK 620 6 ALA A 227 O 86.7 85.3 169.0 100.9 97.4 REMARK 620 7 ASP A 229 OD1 64.6 135.3 101.6 70.7 143.8 81.0 REMARK 620 N 1 2 3 4 5 6 REMARK 999 REMARK 999 SEQUENCE REMARK 999 PROTEIN SEQUENCE HAS BEEN DETERMINED FROM THE CRYSTAL REMARK 999 STRUCTURE. DBREF 4CUO A 1 306 PDB 4CUO 4CUO 1 306 SEQRES 1 A 306 GLN LEU THR PRO THR PHE TYR ARG SER THR CYS PRO ASN SEQRES 2 A 306 VAL THR SER ILE VAL ARG GLY VAL ILE GLN ASP ALA LEU SEQRES 3 A 306 GLN THR ASP LEU ARG ILE PRO ALA SER LEU ILE ARG LEU SEQRES 4 A 306 HIS PHE HIS ASP CYS PHE VAL ASN GLY CYS ASP GLY SER SEQRES 5 A 306 LEU LEU LEU ASP ASN SER ASP THR ILE GLU SER GLU LYS SEQRES 6 A 306 GLN ALA ALA PRO ASN ASN ASN SER ALA ARG GLY PHE ASP SEQRES 7 A 306 VAL VAL ASP ASN ILE LYS THR ALA VAL GLU ASN ALA CYS SEQRES 8 A 306 PRO GLY VAL VAL SER CYS ALA ASP ILE LEU THR ILE ALA SEQRES 9 A 306 ALA GLU GLN SER VAL TRP LEU SER GLY GLY PRO SER TRP SEQRES 10 A 306 PRO VAL PRO LEU GLY ARG ARG ASP SER LEU THR ALA ASN SEQRES 11 A 306 ARG THR LEU ALA ASN GLN THR LEU PRO SER PRO PHE LEU SEQRES 12 A 306 THR LEU ASP GLN LEU LYS THR ASP PHE SER ASP GLN GLY SEQRES 13 A 306 LEU ASN THR THR ASP LEU VAL ALA LEU SER GLY ALA HIS SEQRES 14 A 306 THR PHE GLY ARG ALA GLN CYS GLN PHE PHE SER GLN ARG SEQRES 15 A 306 LEU TYR ASN PHE SER ALA THR GLY SER PRO ASP PRO THR SEQRES 16 A 306 LEU ASN THR THR LEU LEU GLU THR LEU ARG ASN ILE CYS SEQRES 17 A 306 PRO GLN GLY GLY ASN GLY SER THR ILE THR ASN LEU ASP SEQRES 18 A 306 GLN THR THR PRO ASP ALA PHE ASP ASN LYS TYR PHE SER SEQRES 19 A 306 ASN LEU GLN THR GLN TYR GLY ILE LEU GLN THR ASP GLN SEQRES 20 A 306 GLU LEU PHE SER THR LYS GLY ALA ASN THR THR ALA ILE SEQRES 21 A 306 VAL THR LYS PHE SER ALA ASN GLN SER ALA PHE PHE ASN SEQRES 22 A 306 SER PHE VAL ALA SER MET ILE LYS MET GLY ASN ILE GLY SEQRES 23 A 306 VAL LEU THR SNN ASP GLU GLY GLU ILE ARG SER ASN CYS SEQRES 24 A 306 ARG SER VAL ASN GLY GLY ALA MODRES 4CUO ASN A 71 ASN GLYCOSYLATION SITE MODRES 4CUO ASN A 130 ASN GLYCOSYLATION SITE MODRES 4CUO ASN A 158 ASN GLYCOSYLATION SITE MODRES 4CUO ASN A 185 ASN GLYCOSYLATION SITE MODRES 4CUO ASN A 197 ASN GLYCOSYLATION SITE MODRES 4CUO ASN A 213 ASN GLYCOSYLATION SITE MODRES 4CUO ASN A 256 ASN GLYCOSYLATION SITE MODRES 4CUO SNN A 290 ASN L-3-AMINOSUCCINIMIDE HET SNN A 290 8 HET NAG B 1 14 HET FUC B 2 10 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET XYS C 4 9 HET MAN C 5 11 HET MAN C 6 11 HET FUC C 7 10 HET NAG D 1 14 HET FUC D 2 10 HET NAG D 3 14 HET NAG E 1 15 HET FUC E 2 10 HET NAG E 3 14 HET HEM A1307 43 HET NAG A1320 14 HET NAG A1324 14 HET NAG A1325 14 HET CA A1326 1 HET CA A1327 1 HET NA A1328 1 HET CL A1329 1 HET CL A1330 1 HET CL A1331 1 HET SO4 A1332 5 HET SO4 A1333 5 HET SO4 A1334 5 HET CO3 A1335 4 HET CO3 A1336 4 HET CO3 A1337 4 HET CO3 A1338 4 HETNAM SNN L-3-AMINOSUCCINIMIDE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM XYS ALPHA-D-XYLOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM CO3 CARBONATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN XYS ALPHA-D-XYLOSE; D-XYLOSE; XYLOSE; XYLOPYRANOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN HEM HEME FORMUL 1 SNN C4 H6 N2 O2 FORMUL 2 NAG 10(C8 H15 N O6) FORMUL 2 FUC 4(C6 H12 O5) FORMUL 3 BMA C6 H12 O6 FORMUL 3 XYS C5 H10 O5 FORMUL 3 MAN 2(C6 H12 O6) FORMUL 6 HEM C34 H32 FE N4 O4 FORMUL 10 CA 2(CA 2+) FORMUL 12 NA NA 1+ FORMUL 13 CL 3(CL 1-) FORMUL 16 SO4 3(O4 S 2-) FORMUL 19 CO3 4(C O3 2-) FORMUL 23 HOH *321(H2 O) HELIX 1 1 ASN A 13 GLN A 27 1 15 HELIX 2 2 ARG A 31 PHE A 45 1 15 HELIX 3 3 GLY A 51 LEU A 55 5 5 HELIX 4 4 SER A 63 ALA A 67 5 5 HELIX 5 5 GLY A 76 CYS A 91 1 16 HELIX 6 6 SER A 96 SER A 112 1 17 HELIX 7 7 ASN A 130 LEU A 138 1 9 HELIX 8 8 THR A 144 ASP A 154 1 11 HELIX 9 9 ASN A 158 GLY A 167 1 10 HELIX 10 10 ALA A 168 PHE A 171 5 4 HELIX 11 11 GLN A 177 LEU A 183 5 7 HELIX 12 12 ASN A 185 THR A 189 5 5 HELIX 13 13 ASN A 197 CYS A 208 1 12 HELIX 14 14 ASN A 230 THR A 238 1 9 HELIX 15 15 LEU A 243 THR A 252 1 10 HELIX 16 16 ASN A 256 ASN A 267 1 12 HELIX 17 17 ASN A 267 ASN A 284 1 18 SHEET 1 AA 2 ARG A 173 GLN A 175 0 SHEET 2 AA 2 ILE A 217 ASN A 219 -1 O THR A 218 N ALA A 174 SSBOND 1 CYS A 11 CYS A 91 1555 1555 2.02 SSBOND 2 CYS A 44 CYS A 49 1555 1555 2.06 SSBOND 3 CYS A 97 CYS A 299 1555 1555 2.15 SSBOND 4 CYS A 176 CYS A 208 1555 1555 2.03 LINK ND2 ASN A 71 C1 NAG B 1 1555 1555 1.47 LINK ND2 ASN A 130 C1 NAG C 1 1555 1555 1.46 LINK ND2 ASN A 158 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN A 185 C1 NAG A1320 1555 1555 1.45 LINK ND2 ASN A 197 C1 NAG E 1 1555 1555 1.46 LINK ND2 ASN A 213 C1 NAG A1324 1555 1555 1.45 LINK ND2 ASN A 256 C1 NAG A1325 1555 1555 1.46 LINK C THR A 289 N SNN A 290 1555 1555 1.45 LINK N1 SNN A 290 CA ASP A 291 1555 1555 1.47 LINK O3 NAG B 1 C1 FUC B 2 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O3 NAG C 1 C1 FUC C 7 1555 1555 1.46 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.46 LINK O2 BMA C 3 C1 XYS C 4 1555 1555 1.46 LINK O3 BMA C 3 C1 MAN C 5 1555 1555 1.47 LINK O6 BMA C 3 C1 MAN C 6 1555 1555 1.43 LINK O3 NAG D 1 C1 FUC D 2 1555 1555 1.47 LINK O4 NAG D 1 C1 NAG D 3 1555 1555 1.46 LINK O3 NAG E 1 C1 FUC E 2 1555 1555 1.46 LINK O4 NAG E 1 C1 NAG E 3 1555 1555 1.45 LINK O ASP A 43 CA CA A1327 1555 1555 2.33 LINK OD1 ASP A 43 CA CA A1327 1555 1555 2.54 LINK OD1 ASP A 43 NA NA A1328 1555 1555 2.19 LINK O ASP A 43 NA NA A1328 1555 1555 2.52 LINK O VAL A 46 CA CA A1327 1555 1555 2.16 LINK O VAL A 46 NA NA A1328 1555 1555 2.55 LINK O GLY A 48 CA CA A1327 1555 1555 2.17 LINK O GLY A 48 NA NA A1328 1555 1555 2.64 LINK OD1 ASP A 50 CA CA A1327 1555 1555 2.46 LINK OD1 ASP A 50 NA NA A1328 1555 1555 2.39 LINK OG SER A 52 CA CA A1327 1555 1555 2.65 LINK OG SER A 52 NA NA A1328 1555 1555 2.18 LINK NE2 HIS A 169 FE HEM A1307 1555 1555 2.15 LINK OG1 THR A 170 CA CA A1326 1555 1555 2.51 LINK O THR A 170 CA CA A1326 1555 1555 2.29 LINK OD2 ASP A 221 CA CA A1326 1555 1555 2.30 LINK OG1 THR A 224 CA CA A1326 1555 1555 2.41 LINK O THR A 224 CA CA A1326 1555 1555 2.36 LINK O ALA A 227 CA CA A1326 1555 1555 2.34 LINK OD1 ASP A 229 CA CA A1326 1555 1555 2.47 CRYST1 73.115 73.115 164.596 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013677 0.007896 0.000000 0.00000 SCALE2 0.000000 0.015793 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006075 0.00000