HEADER LIGASE 28-MAR-14 4CVK TITLE PAMURF IN COMPLEX WITH UDP-MURNAC-TRIPEPTIDE (MDAP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ALA-FGA-API; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 ATCC: 15692; SOURCE 5 GENE: MURF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS LIGASE, MURF, TRIPEPTIDE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.RUANE,V.MAJCE REVDAT 7 31-JAN-24 4CVK 1 REMARK REVDAT 6 15-NOV-23 4CVK 1 LINK ATOM REVDAT 5 07-DEC-22 4CVK 1 COMPND SOURCE REMARK DBREF REVDAT 5 2 1 SEQRES HETSYN LINK ATOM REVDAT 4 29-JUL-20 4CVK 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 23-SEP-15 4CVK 1 REMARK REVDAT 2 29-APR-15 4CVK 1 COMPND REVDAT 1 22-APR-15 4CVK 0 JRNL AUTH V.MAJCE,K.RUANE JRNL TITL PAMURF IN COMPLEX WITH UDP-MURNAC-TRIPEPTIDE (MDAP) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 34360 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1804 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2485 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 159 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3163 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.99000 REMARK 3 B22 (A**2) : 1.47000 REMARK 3 B33 (A**2) : -0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.766 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3255 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3192 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4431 ; 1.558 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7293 ; 0.864 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 436 ; 6.030 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;30.346 ;23.846 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 491 ;12.920 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;14.669 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 542 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3731 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 688 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1756 ; 1.530 ; 2.249 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1756 ; 1.529 ; 2.249 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2188 ; 2.262 ; 3.357 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1499 ; 2.164 ; 2.468 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4CVK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1290059027. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36216 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 49.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1GG4 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MG FORMATE, 20 % PEG3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.90500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.30500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.64500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.30500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.90500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.64500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 74 REMARK 465 GLY A 191 REMARK 465 THR A 192 REMARK 465 ALA A 193 REMARK 465 HIS A 194 REMARK 465 VAL A 195 REMARK 465 GLY A 196 REMARK 465 GLU A 197 REMARK 465 GLU A 370 REMARK 465 LEU A 371 REMARK 465 GLY A 372 REMARK 465 SER A 373 REMARK 465 TRP A 374 REMARK 465 GLY A 452 REMARK 465 SER A 453 REMARK 465 SER A 454 REMARK 465 GLU A 455 REMARK 465 GLU A 456 REMARK 465 SER A 457 REMARK 465 HIS A 458 REMARK 465 SER A 459 REMARK 465 SER A 460 REMARK 465 VAL A 461 REMARK 465 ASP A 462 REMARK 465 LYS A 463 REMARK 465 LEU A 464 REMARK 465 ALA A 465 REMARK 465 ALA A 466 REMARK 465 ALA A 467 REMARK 465 LEU A 468 REMARK 465 GLU A 469 REMARK 465 HIS A 470 REMARK 465 HIS A 471 REMARK 465 HIS A 472 REMARK 465 HIS A 473 REMARK 465 HIS A 474 REMARK 465 HIS A 475 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 48 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 83 CD NE CZ NH1 NH2 REMARK 470 ARG A 138 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 203 CG CD CE NZ REMARK 470 GLN A 260 CG CD OE1 NE2 REMARK 470 ARG A 270 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 321 CD CE NZ REMARK 470 ARG A 412 CD NE CZ NH1 NH2 REMARK 470 ASP A 428 CG OD1 OD2 REMARK 470 ARG A 439 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 445 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 114 C THR A 115 N -0.140 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 2 CA - CB - CG ANGL. DEV. = -16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 34 71.75 -150.04 REMARK 500 SER A 110 -163.51 -72.37 REMARK 500 ASN A 143 -168.49 -101.97 REMARK 500 ASN A 189 167.72 176.26 REMARK 500 ALA A 342 143.76 -172.56 REMARK 500 THR A 430 -13.15 84.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CVL RELATED DB: PDB REMARK 900 PAMURF IN COMPLEX WITH AMP-PNP REMARK 900 RELATED ID: 4CVM RELATED DB: PDB REMARK 900 PAMURF IN COMPLEX WITH AMP-PNP AND UDP-MURNAC- TRIPEPTIDE (MDAP) REMARK 999 REMARK 999 SEQUENCE REMARK 999 CONTAINS A C-TERM HIS TAG DBREF 4CVK A 1 458 UNP Q9HVZ7 Q9HVZ7_PSEAE 1 458 DBREF 4CVK B 1454 1456 PDB 4CVK 4CVK 1454 1456 SEQADV 4CVK GLU A 39 UNP Q9HVZ7 GLN 39 CONFLICT SEQADV 4CVK ASP A 428 UNP Q9HVZ7 GLN 428 CONFLICT SEQADV 4CVK SER A 459 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVK SER A 460 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVK VAL A 461 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVK ASP A 462 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVK LYS A 463 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVK LEU A 464 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVK ALA A 465 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVK ALA A 466 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVK ALA A 467 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVK LEU A 468 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVK GLU A 469 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVK HIS A 470 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVK HIS A 471 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVK HIS A 472 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVK HIS A 473 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVK HIS A 474 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVK HIS A 475 UNP Q9HVZ7 EXPRESSION TAG SEQRES 1 A 475 MET LEU GLU PRO LEU ARG LEU SER GLN LEU THR VAL ALA SEQRES 2 A 475 LEU ASP ALA ARG LEU ILE GLY GLU ASP ALA VAL PHE SER SEQRES 3 A 475 ALA VAL SER THR ASP SER ARG ALA ILE GLY PRO GLY GLU SEQRES 4 A 475 LEU PHE ILE ALA LEU SER GLY PRO ARG PHE ASP GLY HIS SEQRES 5 A 475 ASP TYR LEU ALA GLU VAL ALA ALA LYS GLY ALA VAL ALA SEQRES 6 A 475 ALA LEU VAL GLU ARG GLU VAL ALA ASP ALA PRO LEU PRO SEQRES 7 A 475 GLN LEU LEU VAL ARG ASP THR ARG ALA ALA LEU GLY ARG SEQRES 8 A 475 LEU GLY ALA LEU ASN ARG ARG LYS PHE THR GLY PRO LEU SEQRES 9 A 475 ALA ALA MET THR GLY SER SER GLY LYS THR THR VAL LYS SEQRES 10 A 475 GLU MET LEU ALA SER ILE LEU ARG THR GLN ALA GLY ASP SEQRES 11 A 475 ALA GLU SER VAL LEU ALA THR ARG GLY ASN LEU ASN ASN SEQRES 12 A 475 ASP LEU GLY VAL PRO LEU THR LEU LEU GLN LEU ALA PRO SEQRES 13 A 475 GLN HIS ARG SER ALA VAL ILE GLU LEU GLY ALA SER ARG SEQRES 14 A 475 ILE GLY GLU ILE ALA TYR THR VAL GLU LEU THR ARG PRO SEQRES 15 A 475 HIS VAL ALA ILE ILE THR ASN ALA GLY THR ALA HIS VAL SEQRES 16 A 475 GLY GLU PHE GLY GLY PRO GLU LYS ILE VAL GLU ALA LYS SEQRES 17 A 475 GLY GLU ILE LEU GLU GLY LEU ALA ALA ASP GLY THR ALA SEQRES 18 A 475 VAL LEU ASN LEU ASP ASP LYS ALA PHE ASP THR TRP LYS SEQRES 19 A 475 ALA ARG ALA SER GLY ARG PRO LEU LEU THR PHE SER LEU SEQRES 20 A 475 ASP ARG PRO GLN ALA ASP PHE ARG ALA ALA ASP LEU GLN SEQRES 21 A 475 ARG ASP ALA ARG GLY CYS MET GLY PHE ARG LEU GLN GLY SEQRES 22 A 475 VAL ALA GLY GLU ALA GLN VAL GLN LEU ASN LEU LEU GLY SEQRES 23 A 475 ARG HIS ASN VAL ALA ASN ALA LEU ALA ALA ALA ALA ALA SEQRES 24 A 475 ALA HIS ALA LEU GLY VAL PRO LEU ASP GLY ILE VAL ALA SEQRES 25 A 475 GLY LEU GLN ALA LEU GLN PRO VAL LYS GLY ARG ALA VAL SEQRES 26 A 475 ALA GLN LEU THR ALA SER GLY LEU ARG VAL ILE ASP ASP SEQRES 27 A 475 SER TYR ASN ALA ASN PRO ALA SER MET LEU ALA ALA ILE SEQRES 28 A 475 ASP ILE LEU SER GLY PHE SER GLY ARG THR VAL LEU VAL SEQRES 29 A 475 LEU GLY ASP MET GLY GLU LEU GLY SER TRP ALA GLU GLN SEQRES 30 A 475 ALA HIS ARG GLU VAL GLY ALA TYR ALA ALA GLY LYS VAL SEQRES 31 A 475 SER ALA LEU TYR ALA VAL GLY PRO LEU MET ALA HIS ALA SEQRES 32 A 475 VAL GLN ALA PHE GLY ALA THR GLY ARG HIS PHE ALA ASP SEQRES 33 A 475 GLN ALA SER LEU ILE GLY ALA LEU ALA THR GLU ASP PRO SEQRES 34 A 475 THR THR THR ILE LEU ILE LYS GLY SER ARG SER ALA ALA SEQRES 35 A 475 MET ASP LYS VAL VAL ALA ALA LEU CYS GLY SER SER GLU SEQRES 36 A 475 GLU SER HIS SER SER VAL ASP LYS LEU ALA ALA ALA LEU SEQRES 37 A 475 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 3 ALA FGA API HET FGA B1455 9 HET API B1456 13 HET UDP A1452 24 HET MUB A1453 19 HETNAM FGA GAMMA-D-GLUTAMIC ACID HETNAM API 2,6-DIAMINOPIMELIC ACID HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM MUB N-ACETYL-ALPHA-MURAMIC ACID HETSYN FGA D-GLUTAMIC ACID HETSYN MUB N-ACETYL-MURAMIC ACID; N-ACETYLMURAMIC ACID FORMUL 2 FGA C5 H9 N O4 FORMUL 2 API C7 H14 N2 O4 FORMUL 3 UDP C9 H14 N2 O12 P2 FORMUL 4 MUB C11 H19 N O8 FORMUL 5 HOH *84(H2 O) HELIX 1 1 LEU A 10 ASP A 15 1 6 HELIX 2 2 GLY A 51 ASP A 53 5 3 HELIX 3 3 TYR A 54 LYS A 61 1 8 HELIX 4 4 ASP A 84 PHE A 100 1 17 HELIX 5 5 SER A 111 GLY A 129 1 19 HELIX 6 6 ASP A 130 GLU A 132 5 3 HELIX 7 7 LEU A 145 GLN A 153 1 9 HELIX 8 8 GLY A 171 ARG A 181 1 11 HELIX 9 9 GLY A 200 GLU A 210 1 11 HELIX 10 10 ILE A 211 LEU A 215 5 5 HELIX 11 11 ALA A 229 ALA A 237 1 9 HELIX 12 12 GLY A 286 LEU A 303 1 18 HELIX 13 13 PRO A 306 LEU A 317 1 12 HELIX 14 14 ASN A 343 GLY A 356 1 14 HELIX 15 15 ALA A 375 ALA A 387 1 13 HELIX 16 16 LEU A 399 GLY A 408 1 10 HELIX 17 17 ASP A 416 ALA A 425 1 10 HELIX 18 18 SER A 438 ALA A 442 5 5 HELIX 19 19 MET A 443 CYS A 451 1 9 SHEET 1 AA 2 LEU A 5 ARG A 6 0 SHEET 2 AA 2 VAL A 24 PHE A 25 -1 O PHE A 25 N LEU A 5 SHEET 1 AB 5 ARG A 17 ILE A 19 0 SHEET 2 AB 5 GLN A 79 LEU A 81 -1 O GLN A 79 N ILE A 19 SHEET 3 AB 5 ALA A 65 VAL A 68 1 O ALA A 66 N LEU A 80 SHEET 4 AB 5 GLU A 39 ILE A 42 1 O PHE A 41 N LEU A 67 SHEET 5 AB 5 ALA A 27 SER A 29 1 O ALA A 27 N LEU A 40 SHEET 1 AC 9 VAL A 134 ALA A 136 0 SHEET 2 AC 9 SER A 160 GLU A 164 1 O SER A 160 N LEU A 135 SHEET 3 AC 9 LEU A 104 THR A 108 1 O ALA A 105 N ILE A 163 SHEET 4 AC 9 VAL A 184 ILE A 187 1 O VAL A 184 N ALA A 106 SHEET 5 AC 9 THR A 220 ASN A 224 1 O THR A 220 N ALA A 185 SHEET 6 AC 9 LEU A 242 SER A 246 1 O LEU A 243 N LEU A 223 SHEET 7 AC 9 PHE A 254 ARG A 261 1 O PHE A 254 N SER A 246 SHEET 8 AC 9 MET A 267 GLY A 273 -1 O GLY A 268 N GLN A 260 SHEET 9 AC 9 ALA A 278 GLN A 281 -1 O ALA A 278 N LEU A 271 SHEET 1 AD 6 VAL A 325 LEU A 328 0 SHEET 2 AD 6 ARG A 334 ASP A 338 -1 O VAL A 335 N GLN A 327 SHEET 3 AD 6 THR A 432 LYS A 436 1 O ILE A 433 N ILE A 336 SHEET 4 AD 6 THR A 361 GLY A 366 1 O VAL A 362 N LEU A 434 SHEET 5 AD 6 ALA A 392 VAL A 396 1 O ALA A 392 N LEU A 363 SHEET 6 AD 6 ARG A 412 PHE A 414 1 O ARG A 412 N ALA A 395 LINK PB UDP A1452 O1 MUB A1453 1555 1555 1.62 LINK C10 MUB A1453 N ALA B1454 1555 1555 1.32 LINK C ALA B1454 N FGA B1455 1555 1555 1.37 LINK CD FGA B1455 N API B1456 1555 1555 1.36 CRYST1 57.810 87.290 92.610 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017298 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011456 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010798 0.00000