HEADER OXIDOREDUCTASE 01-APR-14 4CW6 TITLE CRYSTAL STRUCTURE OF COFACTOR-FREE URATE OXIDASE IN COMPLEX WITH THE TITLE 2 5-PEROXO DERIVATIVE OF 9-METYL URIC ACID (X-RAY DOSE, 92 KGY) COMPND MOL_ID: 1; COMPND 2 MOLECULE: URICASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: URATE OXIDASE; COMPND 5 EC: 1.7.3.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FLAVUS; SOURCE 3 ORGANISM_TAXID: 5059; SOURCE 4 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 5 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4932 KEYWDS OXIDOREDUCTASE, COFACTOR-FREE OXIDASE EXPDTA X-RAY DIFFRACTION AUTHOR S.BUI,R.A.STEINER REVDAT 5 21-FEB-18 4CW6 1 JRNL REVDAT 4 20-DEC-17 4CW6 1 JRNL REVDAT 3 21-JUN-17 4CW6 1 REMARK REVDAT 2 17-DEC-14 4CW6 1 JRNL REVDAT 1 29-OCT-14 4CW6 0 JRNL AUTH S.BUI,D.VON STETTEN,P.G.JAMBRINA,T.PRANGE,N.COLLOC'H, JRNL AUTH 2 D.DE SANCTIS,A.ROYANT,E.ROSTA,R.A.STEINER JRNL TITL DIRECT EVIDENCE FOR A PEROXIDE INTERMEDIATE AND A REACTIVE JRNL TITL 2 ENZYME-SUBSTRATE-DIOXYGEN CONFIGURATION IN A COFACTOR-FREE JRNL TITL 3 OXIDASE. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 53 13710 2014 JRNL REFN ESSN 1521-3773 JRNL PMID 25314114 JRNL DOI 10.1002/ANIE.201405485 REMARK 2 REMARK 2 RESOLUTION. 1.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 96521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.113 REMARK 3 R VALUE (WORKING SET) : 0.112 REMARK 3 FREE R VALUE : 0.132 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5076 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7059 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 400 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2409 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 592 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.24000 REMARK 3 B22 (A**2) : 0.73000 REMARK 3 B33 (A**2) : 0.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.032 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.032 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.023 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.227 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.984 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.980 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2741 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2606 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3765 ; 1.651 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6044 ; 0.855 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 419 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3230 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 631 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1293 ; 2.720 ; 1.165 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1293 ; 2.720 ; 1.165 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1633 ; 3.094 ; 1.749 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1448 ; 3.456 ; 1.387 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5347 ; 3.074 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 160 ;62.275 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5743 ;19.470 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4CW6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-APR-14. REMARK 100 THE DEPOSITION ID IS D_1290060177. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101601 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.280 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LIKE PDB CODE 4CW2, PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.75050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.56900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.17700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.75050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.56900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.17700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.75050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.56900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.17700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.75050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.56900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.17700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -123.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 79.50100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 104.35400 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 79.50100 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 95.13800 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 95.13800 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 104.35400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2304 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 187 O HOH A 2460 1.97 REMARK 500 CD1 ILE A 54 O HOH A 2164 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2345 O HOH A 2382 4566 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 299 CB SER A 299 OG 0.087 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 122 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 122 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 176 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 118 29.01 -154.60 REMARK 500 SER A 124 166.00 91.17 REMARK 500 ASP A 175 105.83 -163.54 REMARK 500 SER A 226 162.61 178.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2071 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A2076 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A2131 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A2134 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A2159 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A2220 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A2231 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A2234 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A2502 DISTANCE = 22.56 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XDS A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXY A 1304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CW0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COFACTOR-FREE URATE OXIDASE ANAEROBICALLY REMARK 900 COMPLEXED WITH 9-METHYL URIC ACID REMARK 900 RELATED ID: 4CW2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COFACTOR-FREE URATE OXIDASE IN COMPLEX WITH REMARK 900 THE 5-PEROXO DERIVATIVE OF 9-METYL URIC ACID (X-RAY DOSE, 2.5 KGY) REMARK 900 RELATED ID: 4CW3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COFACTOR-FREE URATE OXIDASE IN COMPLEX WITH REMARK 900 THE 5-PEROXO DERIVATIVE OF 9-METYL URIC ACID (X-RAY DOSE, 665 KGY) DBREF 4CW6 A 1 301 UNP Q00511 URIC_ASPFL 2 302 SEQRES 1 A 301 SAC ALA VAL LYS ALA ALA ARG TYR GLY LYS ASP ASN VAL SEQRES 2 A 301 ARG VAL TYR LYS VAL HIS LYS ASP GLU LYS THR GLY VAL SEQRES 3 A 301 GLN THR VAL TYR GLU MET THR VAL CYS VAL LEU LEU GLU SEQRES 4 A 301 GLY GLU ILE GLU THR SER TYR THR LYS ALA ASP ASN SER SEQRES 5 A 301 VAL ILE VAL ALA THR ASP SER ILE LYS ASN THR ILE TYR SEQRES 6 A 301 ILE THR ALA LYS GLN ASN PRO VAL THR PRO PRO GLU LEU SEQRES 7 A 301 PHE GLY SER ILE LEU GLY THR HIS PHE ILE GLU LYS TYR SEQRES 8 A 301 ASN HIS ILE HIS ALA ALA HIS VAL ASN ILE VAL CYS HIS SEQRES 9 A 301 ARG TRP THR ARG MET ASP ILE ASP GLY LYS PRO HIS PRO SEQRES 10 A 301 HIS SER PHE ILE ARG ASP SER GLU GLU LYS ARG ASN VAL SEQRES 11 A 301 GLN VAL ASP VAL VAL GLU GLY LYS GLY ILE ASP ILE LYS SEQRES 12 A 301 SER SER LEU SER GLY LEU THR VAL LEU LYS SER THR ASN SEQRES 13 A 301 SER GLN PHE TRP GLY PHE LEU ARG ASP GLU TYR THR THR SEQRES 14 A 301 LEU LYS GLU THR TRP ASP ARG ILE LEU SER THR ASP VAL SEQRES 15 A 301 ASP ALA THR TRP GLN TRP LYS ASN PHE SER GLY LEU GLN SEQRES 16 A 301 GLU VAL ARG SER HIS VAL PRO LYS PHE ASP ALA THR TRP SEQRES 17 A 301 ALA THR ALA ARG GLU VAL THR LEU LYS THR PHE ALA GLU SEQRES 18 A 301 ASP ASN SER ALA SER VAL GLN ALA THR MET TYR LYS MET SEQRES 19 A 301 ALA GLU GLN ILE LEU ALA ARG GLN GLN LEU ILE GLU THR SEQRES 20 A 301 VAL GLU TYR SER LEU PRO ASN LYS HIS TYR PHE GLU ILE SEQRES 21 A 301 ASP LEU SER TRP HIS LYS GLY LEU GLN ASN THR GLY LYS SEQRES 22 A 301 ASN ALA GLU VAL PHE ALA PRO GLN SER ASP PRO ASN GLY SEQRES 23 A 301 LEU ILE LYS CYS THR VAL GLY ARG SER SER LEU LYS SER SEQRES 24 A 301 LYS LEU MODRES 4CW6 SAC A 1 SER N-ACETYL-SERINE HET SAC A 1 18 HET XDS A1302 15 HET MPD A1303 8 HET OXY A1304 2 HET MUA A1305 13 HETNAM SAC N-ACETYL-SERINE HETNAM XDS (5S)-5-(DIOXIDANYL)-9-METHYL-7H-PURINE-2,6,8-TRIONE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM OXY OXYGEN MOLECULE HETNAM MUA 9-METHYL URIC ACID FORMUL 1 SAC C5 H9 N O4 FORMUL 2 XDS C6 H6 N4 O5 FORMUL 3 MPD C6 H14 O2 FORMUL 4 OXY O2 FORMUL 5 MUA C6 H6 N4 O3 FORMUL 6 HOH *592(H2 O) HELIX 1 1 ILE A 42 LYS A 48 1 7 HELIX 2 2 ASP A 50 ILE A 54 5 5 HELIX 3 3 ALA A 56 ASN A 71 1 16 HELIX 4 4 PRO A 75 TYR A 91 1 17 HELIX 5 5 GLY A 193 HIS A 200 1 8 HELIX 6 6 HIS A 200 ASP A 222 1 23 HELIX 7 7 SER A 226 GLN A 242 1 17 HELIX 8 8 THR A 271 ALA A 275 5 5 SHEET 1 AA 8 TYR A 8 LYS A 20 0 SHEET 2 AA 8 GLN A 27 GLY A 40 -1 O THR A 28 N HIS A 19 SHEET 3 AA 8 ILE A 94 HIS A 104 -1 N HIS A 95 O GLU A 39 SHEET 4 AA 8 LYS A 127 VAL A 135 -1 O ARG A 128 N CYS A 103 SHEET 5 AA 8 ILE A 140 LYS A 153 -1 O ASP A 141 N ASP A 133 SHEET 6 AA 8 LEU A 178 TRP A 188 -1 O LEU A 178 N LYS A 153 SHEET 7 AA 8 ILE A 245 ASN A 254 -1 N GLU A 246 O GLN A 187 SHEET 8 AA 8 GLY A 286 GLY A 293 -1 O GLY A 286 N ASN A 254 SHEET 1 AB 2 THR A 107 ILE A 111 0 SHEET 2 AB 2 LYS A 114 ILE A 121 -1 O LYS A 114 N ILE A 111 SHEET 1 AC 2 TYR A 257 GLU A 259 0 SHEET 2 AC 2 PHE A 278 PRO A 280 -1 O ALA A 279 N PHE A 258 LINK C ASAC A 1 N AALA A 2 1555 1555 1.33 LINK C BSAC A 1 N BALA A 2 1555 1555 1.32 CISPEP 1 THR A 74 PRO A 75 0 -16.63 CISPEP 2 THR A 74 PRO A 75 0 -14.88 CISPEP 3 ASP A 283 PRO A 284 0 -10.60 CISPEP 4 ASP A 283 PRO A 284 0 -13.26 SITE 1 AC1 14 ILE A 54 ALA A 56 THR A 57 ASP A 58 SITE 2 AC1 14 PHE A 159 LEU A 170 ARG A 176 SER A 226 SITE 3 AC1 14 VAL A 227 GLN A 228 ASN A 254 HIS A 256 SITE 4 AC1 14 ILE A 288 OXY A1304 SITE 1 AC2 7 GLN A 158 TRP A 174 SER A 192 HOH A2470 SITE 2 AC2 7 HOH A2519 HOH A2622 HOH A2623 SITE 1 AC3 6 THR A 57 ASN A 254 HIS A 256 GLY A 286 SITE 2 AC3 6 ILE A 288 XDS A1302 CRYST1 79.501 95.138 104.354 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012578 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010511 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009583 0.00000 HETATM 1 C1AASAC A 1 61.644 57.727 19.941 0.35 27.24 C ANISOU 1 C1AASAC A 1 3209 3706 3435 -145 1311 344 C HETATM 2 C1ABSAC A 1 61.801 57.662 19.939 0.35 27.44 C ANISOU 2 C1ABSAC A 1 3130 3679 3614 -159 1172 485 C HETATM 3 C2AASAC A 1 63.055 58.135 19.651 0.35 27.41 C ANISOU 3 C2AASAC A 1 2958 3605 3851 -228 560 104 C HETATM 4 C2ABSAC A 1 63.141 58.299 19.719 0.35 26.91 C ANISOU 4 C2ABSAC A 1 3064 3395 3763 -270 573 59 C HETATM 5 OACASAC A 1 61.112 56.760 19.449 0.35 28.45 O ANISOU 5 OACASAC A 1 3525 3985 3300 34 2059 -458 O HETATM 6 OACBSAC A 1 61.502 56.576 19.503 0.35 31.36 O ANISOU 6 OACBSAC A 1 4138 4083 3694 194 1445 -231 O HETATM 7 N ASAC A 1 60.981 58.525 20.769 0.50 27.33 N ANISOU 7 N ASAC A 1 3191 3524 3667 -181 958 39 N HETATM 8 N BSAC A 1 60.945 58.401 20.636 0.50 28.54 N ANISOU 8 N BSAC A 1 3264 3759 3819 -189 1007 188 N HETATM 9 CA ASAC A 1 59.667 58.098 21.326 0.50 21.11 C ANISOU 9 CA ASAC A 1 2846 2677 2496 126 643 -36 C HETATM 10 CA BSAC A 1 59.593 57.898 20.998 0.50 23.39 C ANISOU 10 CA BSAC A 1 2923 3109 2854 129 682 173 C HETATM 11 C ASAC A 1 58.576 59.036 20.890 0.50 18.02 C ANISOU 11 C ASAC A 1 2762 2306 1777 -141 644 62 C HETATM 12 C BSAC A 1 58.556 58.964 20.821 0.50 17.89 C ANISOU 12 C BSAC A 1 2770 2315 1712 -269 670 34 C HETATM 13 O ASAC A 1 58.859 60.159 20.447 0.50 22.72 O ANISOU 13 O ASAC A 1 4233 2373 2025 -529 1062 55 O HETATM 14 O BSAC A 1 58.882 60.122 20.515 0.50 21.52 O ANISOU 14 O BSAC A 1 4150 2405 1622 -563 1211 94 O HETATM 15 CB ASAC A 1 59.745 57.987 22.845 0.50 20.78 C ANISOU 15 CB ASAC A 1 2598 2792 2505 31 -28 -10 C HETATM 16 CB BSAC A 1 59.583 57.395 22.441 0.50 24.76 C ANISOU 16 CB BSAC A 1 3399 3164 2844 -93 184 341 C HETATM 17 OG ASAC A 1 60.500 56.822 23.200 0.50 22.46 O ANISOU 17 OG ASAC A 1 2559 3061 2911 469 158 -208 O HETATM 18 OG BSAC A 1 60.485 58.199 23.202 0.50 32.29 O ANISOU 18 OG BSAC A 1 4584 5541 2144 -936 -83 193 O