HEADER OXIDOREDUCTASE 02-APR-14 4CWD TITLE CRYSTAL STRUCTURE OF HUMAN GAMMA-BUTYROBETAINE,2-OXOGLUTARATE IN TITLE 2 COMPLEX WITH 449, A NOVEL SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-BUTYROBETAINE DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GAMMA-BUTYROBETAINE HYDROXYLASE, GAMMA-BBH, GAMMA- COMPND 5 BUTYROBETAINE, 2-OXOGLUTARATE DIOXYGENASE; COMPND 6 EC: 1.14.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: DH10BAC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFBOH-LIC-BSE KEYWDS OXIDOREDUCTASE, 2-OG AND IRON DEPENDENT DIOXYGENASE, CARNITINE KEYWDS 2 BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR M.A.MCDONOUGH,G.KOCHAN,A.RYDZIK,C.J.SCHOFIELD REVDAT 5 20-DEC-23 4CWD 1 REMARK LINK REVDAT 4 07-MAR-18 4CWD 1 SOURCE AUTHOR JRNL REVDAT 3 28-JUN-17 4CWD 1 REMARK REVDAT 2 08-OCT-14 4CWD 1 JRNL REVDAT 1 17-SEP-14 4CWD 0 JRNL AUTH A.M.RYDZIK,I.K.LEUNG,G.T.KOCHAN,M.A.MCDONOUGH,T.D.CLARIDGE, JRNL AUTH 2 C.J.SCHOFIELD JRNL TITL OXYGENASE-CATALYZED DESYMMETRIZATION OF JRNL TITL 2 N,N-DIALKYL-PIPERIDINE-4-CARBOXYLIC ACIDS. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 53 10925 2014 JRNL REFN ESSN 1521-3773 JRNL PMID 25164544 JRNL DOI 10.1002/ANIE.201406125 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 35432 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8278 - 4.5684 0.98 2491 143 0.1723 0.2287 REMARK 3 2 4.5684 - 3.6297 0.99 2416 145 0.1321 0.1736 REMARK 3 3 3.6297 - 3.1720 0.98 2355 140 0.1352 0.1843 REMARK 3 4 3.1720 - 2.8824 1.00 2393 144 0.1576 0.1774 REMARK 3 5 2.8824 - 2.6761 0.99 2399 144 0.1928 0.2496 REMARK 3 6 2.6761 - 2.5185 0.99 2376 141 0.1920 0.2394 REMARK 3 7 2.5185 - 2.3925 1.00 2383 143 0.1855 0.2105 REMARK 3 8 2.3925 - 2.2884 1.00 2389 142 0.1700 0.2091 REMARK 3 9 2.2884 - 2.2003 1.00 2386 142 0.1622 0.1794 REMARK 3 10 2.2003 - 2.1245 1.00 2375 141 0.1680 0.1726 REMARK 3 11 2.1245 - 2.0581 1.00 2384 143 0.1881 0.2231 REMARK 3 12 2.0581 - 1.9993 1.00 2357 140 0.2260 0.2657 REMARK 3 13 1.9993 - 1.9466 1.00 2370 142 0.2434 0.2903 REMARK 3 14 1.9466 - 1.8992 1.00 2367 141 0.2437 0.2657 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3222 REMARK 3 ANGLE : 0.959 4376 REMARK 3 CHIRALITY : 0.037 476 REMARK 3 PLANARITY : 0.004 559 REMARK 3 DIHEDRAL : 13.818 1179 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 0 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4829 34.4685 -14.0373 REMARK 3 T TENSOR REMARK 3 T11: 0.2234 T22: 0.3093 REMARK 3 T33: 0.3109 T12: -0.0426 REMARK 3 T13: -0.0530 T23: 0.0290 REMARK 3 L TENSOR REMARK 3 L11: 0.0527 L22: 0.0541 REMARK 3 L33: 0.0727 L12: -0.0052 REMARK 3 L13: 0.0051 L23: -0.0623 REMARK 3 S TENSOR REMARK 3 S11: -0.1225 S12: 0.1982 S13: 0.2276 REMARK 3 S21: 0.1037 S22: 0.0447 S23: -0.0639 REMARK 3 S31: -0.2859 S32: 0.1833 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 26 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.5111 21.2007 -8.9390 REMARK 3 T TENSOR REMARK 3 T11: 0.1801 T22: 0.2148 REMARK 3 T33: 0.2159 T12: -0.0215 REMARK 3 T13: -0.0308 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.1177 L22: 0.1003 REMARK 3 L33: 0.0779 L12: 0.0323 REMARK 3 L13: 0.0840 L23: 0.0524 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: 0.0071 S13: 0.0439 REMARK 3 S21: 0.0579 S22: 0.0092 S23: -0.0418 REMARK 3 S31: 0.0277 S32: 0.0695 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 95 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.7390 20.8556 -39.2460 REMARK 3 T TENSOR REMARK 3 T11: 0.2253 T22: 0.2795 REMARK 3 T33: 0.2525 T12: -0.0405 REMARK 3 T13: 0.0018 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.0170 L22: 0.0360 REMARK 3 L33: 0.0235 L12: 0.0357 REMARK 3 L13: -0.0298 L23: -0.0219 REMARK 3 S TENSOR REMARK 3 S11: -0.0375 S12: 0.0263 S13: 0.0848 REMARK 3 S21: -0.0181 S22: -0.0013 S23: -0.1377 REMARK 3 S31: -0.1023 S32: 0.1131 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 124 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.7744 4.0224 -48.8633 REMARK 3 T TENSOR REMARK 3 T11: 0.1926 T22: 0.2054 REMARK 3 T33: 0.1765 T12: -0.0126 REMARK 3 T13: 0.0110 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.4927 L22: 0.3557 REMARK 3 L33: 0.4554 L12: 0.0159 REMARK 3 L13: 0.0330 L23: -0.0117 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: 0.0303 S13: 0.0140 REMARK 3 S21: -0.0596 S22: -0.0265 S23: -0.0043 REMARK 3 S31: 0.0585 S32: 0.0933 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CWD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-APR-14. REMARK 100 THE DEPOSITION ID IS D_1290060210. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 PLUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35472 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 24.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.17000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3MS5 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM CITRATE, 20% PEG 3350, REMARK 280 6% DIAMINE HEXAN, 10MM ZNSO4, PH 7.0, 1MM 4-CARBOXY-1,1- REMARK 280 DIMETHYLPIPERIDIN-1-IUM REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 53.25900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 30.74910 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 68.44900 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 53.25900 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 30.74910 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 68.44900 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 53.25900 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 30.74910 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 68.44900 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 53.25900 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 30.74910 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 68.44900 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 53.25900 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 30.74910 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 68.44900 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 53.25900 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 30.74910 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 68.44900 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 61.49820 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 136.89800 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 61.49820 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 136.89800 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 61.49820 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 136.89800 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 61.49820 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 136.89800 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 61.49820 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 136.89800 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 61.49820 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 136.89800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -53.25900 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 -30.74910 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -68.44900 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2095 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2395 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2396 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 385 REMARK 465 GLY A 386 REMARK 465 ASN A 387 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 71 CZ NH1 NH2 REMARK 470 LYS A 72 CE NZ REMARK 470 GLN A 87 OE1 NE2 REMARK 470 ARG A 132 CD NE CZ NH1 NH2 REMARK 470 GLU A 135 CD OE1 OE2 REMARK 470 LYS A 158 CE NZ REMARK 470 LYS A 167 CD CE NZ REMARK 470 LYS A 221 CE NZ REMARK 470 LYS A 243 CE NZ REMARK 470 GLN A 247 CG CD OE1 NE2 REMARK 470 LYS A 283 CG CD CE NZ REMARK 470 GLN A 285 CG CD OE1 NE2 REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 GLU A 325 CG CD OE1 OE2 REMARK 470 GLU A 357 CG CD OE1 OE2 REMARK 470 ARG A 382 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2278 O HOH A 2283 2.01 REMARK 500 O HOH A 2035 O HOH A 2036 2.10 REMARK 500 OE1 GLU A 230 O HOH A 2297 2.11 REMARK 500 O HOH A 2116 O HOH A 2117 2.12 REMARK 500 O HOH A 2153 O HOH A 2154 2.14 REMARK 500 O HOH A 2167 O HOH A 2376 2.15 REMARK 500 O HOH A 2364 O HOH A 2365 2.15 REMARK 500 O HOH A 2128 O HOH A 2129 2.16 REMARK 500 O HOH A 2206 O HOH A 2207 2.16 REMARK 500 O HOH A 2130 O HOH A 2303 2.16 REMARK 500 O HOH A 2278 O HOH A 2279 2.17 REMARK 500 O HOH A 2140 O HOH A 2361 2.17 REMARK 500 O HOH A 2353 O HOH A 2354 2.18 REMARK 500 OD1 ASN A 333 O HOH A 2390 2.18 REMARK 500 O HOH A 2140 O HOH A 2141 2.19 REMARK 500 O HOH A 2079 O HOH A 2213 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O4 PEG A 1387 O4 PEG A 1387 6555 1.35 REMARK 500 O HOH A 2049 O HOH A 2116 18444 2.14 REMARK 500 OG SER A 200 O HOH A 2085 18444 2.14 REMARK 500 O HOH A 2033 O HOH A 2187 17554 2.16 REMARK 500 O HOH A 2106 O HOH A 2110 6555 2.16 REMARK 500 O HOH A 2154 O HOH A 2364 18444 2.17 REMARK 500 O HOH A 2278 O HOH A 2278 18444 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 14 19.27 58.88 REMARK 500 TYR A 194 40.06 -93.90 REMARK 500 ASP A 265 -94.90 -145.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 389 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 38 SG REMARK 620 2 CYS A 40 SG 110.5 REMARK 620 3 CYS A 43 SG 119.0 109.1 REMARK 620 4 HIS A 82 NE2 113.3 104.9 98.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 388 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 202 NE2 REMARK 620 2 ASP A 204 OD1 96.4 REMARK 620 3 HIS A 347 NE2 94.8 99.2 REMARK 620 4 OGA A1386 O2 92.9 98.8 159.5 REMARK 620 5 OGA A1386 O2' 98.1 165.0 83.3 76.8 REMARK 620 6 HOH A2274 O 171.3 90.3 89.5 80.6 74.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 388 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 389 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 449 A 1385 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OGA A 1386 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1387 DBREF 4CWD A 1 387 UNP O75936 BODG_HUMAN 1 387 SEQADV 4CWD SER A 0 UNP O75936 EXPRESSION TAG SEQRES 1 A 388 SER MET ALA CYS THR ILE GLN LYS ALA GLU ALA LEU ASP SEQRES 2 A 388 GLY ALA HIS LEU MET GLN ILE LEU TRP TYR ASP GLU GLU SEQRES 3 A 388 GLU SER LEU TYR PRO ALA VAL TRP LEU ARG ASP ASN CYS SEQRES 4 A 388 PRO CYS SER ASP CYS TYR LEU ASP SER ALA LYS ALA ARG SEQRES 5 A 388 LYS LEU LEU VAL GLU ALA LEU ASP VAL ASN ILE GLY ILE SEQRES 6 A 388 LYS GLY LEU ILE PHE ASP ARG LYS LYS VAL TYR ILE THR SEQRES 7 A 388 TRP PRO ASP GLU HIS TYR SER GLU PHE GLN ALA ASP TRP SEQRES 8 A 388 LEU LYS LYS ARG CYS PHE SER LYS GLN ALA ARG ALA LYS SEQRES 9 A 388 LEU GLN ARG GLU LEU PHE PHE PRO GLU CYS GLN TYR TRP SEQRES 10 A 388 GLY SER GLU LEU GLN LEU PRO THR LEU ASP PHE GLU ASP SEQRES 11 A 388 VAL LEU ARG TYR ASP GLU HIS ALA TYR LYS TRP LEU SER SEQRES 12 A 388 THR LEU LYS LYS VAL GLY ILE VAL ARG LEU THR GLY ALA SEQRES 13 A 388 SER ASP LYS PRO GLY GLU VAL SER LYS LEU GLY LYS ARG SEQRES 14 A 388 MET GLY PHE LEU TYR LEU THR PHE TYR GLY HIS THR TRP SEQRES 15 A 388 GLN VAL GLN ASP LYS ILE ASP ALA ASN ASN VAL ALA TYR SEQRES 16 A 388 THR THR GLY LYS LEU SER PHE HIS THR ASP TYR PRO ALA SEQRES 17 A 388 LEU HIS HIS PRO PRO GLY VAL GLN LEU LEU HIS CYS ILE SEQRES 18 A 388 LYS GLN THR VAL THR GLY GLY ASP SER GLU ILE VAL ASP SEQRES 19 A 388 GLY PHE ASN VAL CYS GLN LYS LEU LYS LYS ASN ASN PRO SEQRES 20 A 388 GLN ALA PHE GLN ILE LEU SER SER THR PHE VAL ASP PHE SEQRES 21 A 388 THR ASP ILE GLY VAL ASP TYR CYS ASP PHE SER VAL GLN SEQRES 22 A 388 SER LYS HIS LYS ILE ILE GLU LEU ASP ASP LYS GLY GLN SEQRES 23 A 388 VAL VAL ARG ILE ASN PHE ASN ASN ALA THR ARG ASP THR SEQRES 24 A 388 ILE PHE ASP VAL PRO VAL GLU ARG VAL GLN PRO PHE TYR SEQRES 25 A 388 ALA ALA LEU LYS GLU PHE VAL ASP LEU MET ASN SER LYS SEQRES 26 A 388 GLU SER LYS PHE THR PHE LYS MET ASN PRO GLY ASP VAL SEQRES 27 A 388 ILE THR PHE ASP ASN TRP ARG LEU LEU HIS GLY ARG ARG SEQRES 28 A 388 SER TYR GLU ALA GLY THR GLU ILE SER ARG HIS LEU GLU SEQRES 29 A 388 GLY ALA TYR ALA ASP TRP ASP VAL VAL MET SER ARG LEU SEQRES 30 A 388 ARG ILE LEU ARG GLN ARG VAL GLU ASN GLY ASN HET NI A 388 1 HET ZN A 389 1 HET 449 A1385 11 HET OGA A1386 10 HET PEG A1387 7 HETNAM NI NICKEL (II) ION HETNAM ZN ZINC ION HETNAM 449 4-CARBOXY-1,1-DIMETHYLPIPERIDIN-1-IUM HETNAM OGA N-OXALYLGLYCINE HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 2 NI NI 2+ FORMUL 3 ZN ZN 2+ FORMUL 4 449 C8 H16 N O2 1+ FORMUL 5 OGA C4 H5 N O5 FORMUL 6 PEG C4 H10 O3 FORMUL 7 HOH *411(H2 O) HELIX 1 1 SER A 0 CYS A 3 5 4 HELIX 2 2 ALA A 31 ASN A 37 1 7 HELIX 3 3 LEU A 54 LEU A 58 5 5 HELIX 4 4 ALA A 88 ARG A 94 1 7 HELIX 5 5 SER A 97 PHE A 110 1 14 HELIX 6 6 PHE A 127 TYR A 133 1 7 HELIX 7 7 TYR A 133 GLY A 148 1 16 HELIX 8 8 GLY A 160 GLY A 170 1 11 HELIX 9 9 ASN A 191 THR A 195 5 5 HELIX 10 10 GLY A 234 ASN A 245 1 12 HELIX 11 11 ASN A 245 SER A 253 1 9 HELIX 12 12 PRO A 303 GLU A 305 5 3 HELIX 13 13 ARG A 306 SER A 323 1 18 HELIX 14 14 ASP A 368 GLU A 384 1 17 SHEET 1 AA 3 ILE A 5 LEU A 11 0 SHEET 2 AA 3 LEU A 16 TRP A 21 -1 O LEU A 16 N LEU A 11 SHEET 3 AA 3 GLU A 26 PRO A 30 -1 O SER A 27 N ILE A 19 SHEET 1 AB 2 TYR A 44 LEU A 45 0 SHEET 2 AB 2 ALA A 50 ARG A 51 -1 O ALA A 50 N LEU A 45 SHEET 1 AC 3 GLY A 66 PHE A 69 0 SHEET 2 AC 3 LYS A 73 THR A 77 -1 O TYR A 75 N ILE A 68 SHEET 3 AC 3 TYR A 83 GLN A 87 -1 O SER A 84 N ILE A 76 SHEET 1 AD 6 THR A 124 ASP A 126 0 SHEET 2 AD 6 ILE A 149 THR A 153 1 O ARG A 151 N LEU A 125 SHEET 3 AD 6 VAL A 337 ASP A 341 -1 O VAL A 337 N LEU A 152 SHEET 4 AD 6 VAL A 214 LYS A 221 -1 O GLN A 215 N PHE A 340 SHEET 5 AD 6 HIS A 361 ALA A 367 -1 O HIS A 361 N ILE A 220 SHEET 6 AD 6 TRP A 181 VAL A 183 -1 O TRP A 181 N GLY A 364 SHEET 1 AE 4 LEU A 199 HIS A 202 0 SHEET 2 AE 4 LEU A 345 ARG A 349 -1 O HIS A 347 N HIS A 202 SHEET 3 AE 4 SER A 229 ASP A 233 -1 O GLU A 230 N GLY A 348 SHEET 4 AE 4 PHE A 328 PHE A 330 -1 O PHE A 328 N ILE A 231 SHEET 1 AF 2 PHE A 256 VAL A 264 0 SHEET 2 AF 2 ASP A 268 LYS A 276 -1 O PHE A 269 N GLY A 263 SHEET 1 AG 2 ILE A 278 LEU A 280 0 SHEET 2 AG 2 VAL A 286 ILE A 289 -1 N VAL A 287 O GLU A 279 LINK SG CYS A 38 ZN ZN A 389 1555 1555 2.21 LINK SG CYS A 40 ZN ZN A 389 1555 1555 2.39 LINK SG CYS A 43 ZN ZN A 389 1555 1555 2.32 LINK NE2 HIS A 82 ZN ZN A 389 1555 1555 2.09 LINK NE2 HIS A 202 NI NI A 388 1555 1555 2.24 LINK OD1 ASP A 204 NI NI A 388 1555 1555 2.14 LINK NE2 HIS A 347 NI NI A 388 1555 1555 2.07 LINK NI NI A 388 O2 OGA A1386 1555 1555 2.39 LINK NI NI A 388 O2' OGA A1386 1555 1555 2.23 LINK NI NI A 388 O HOH A2274 1555 1555 2.59 SITE 1 AC1 5 HIS A 202 ASP A 204 HIS A 347 OGA A1386 SITE 2 AC1 5 HOH A2274 SITE 1 AC2 4 CYS A 38 CYS A 40 CYS A 43 HIS A 82 SITE 1 AC3 13 TYR A 177 TRP A 181 ASN A 191 TYR A 194 SITE 2 AC3 13 ASP A 204 TYR A 205 ASN A 292 THR A 295 SITE 3 AC3 13 TYR A 366 OGA A1386 HOH A2260 HOH A2276 SITE 4 AC3 13 HOH A2330 SITE 1 AC4 12 VAL A 183 ALA A 193 HIS A 202 ASP A 204 SITE 2 AC4 12 HIS A 347 ARG A 349 ARG A 360 LEU A 362 SITE 3 AC4 12 NI A 388 449 A1385 HOH A2274 HOH A2296 SITE 1 AC5 4 ASP A 70 TYR A 75 TYR A 83 HOH A2124 CRYST1 106.518 106.518 205.347 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009388 0.005420 0.000000 0.00000 SCALE2 0.000000 0.010840 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004870 0.00000