HEADER VIRUS 02-APR-14 4CWK OBSLTE 10-DEC-14 4CWK 4CTF TITLE THE LIMITS OF STRUCTURAL PLASTICITY IN A PICORNAVIRUS TITLE 2 CAPSID REVEALED BY A MASSIVELY EXPANDED EQUINE RHINITIS A TITLE 3 VIRUS PARTICLE SPLIT 4CWG 4CWH 4CWI 4CWJ 4CWK 4CWL COMPND MOL_ID: 1; COMPND 2 MOLECULE: P1; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 FRAGMENT: RESIDUES 311-536 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EQUINE RHINITIS A VIRUS; SOURCE 3 ORGANISM_TAXID: 47000 KEYWDS VIRUS, PICORNAVIRUS, CAPSID STRUCTURE, CAPSID EXPANSION, UNCOATING EXPDTA ELECTRON MICROSCOPY AUTHOR S.E.BAKKER,E.GROPPELLI,A.R.PEARSON,P.G.STOCKLEY,D.J.ROWLANDS, AUTHOR 2 N.A.RANSON REVDAT 3 10-DEC-14 4CWK 1 OBSLTE REVDAT 2 28-MAY-14 4CWK 1 REMARK REVDAT 1 21-MAY-14 4CWK 0 JRNL AUTH S.E.BAKKER,E.GROPPELLI,A.R.PEARSON,P.G.STOCKLEY, JRNL AUTH 2 D.J.ROWLANDS,N.A.RANSON JRNL TITL LIMITS OF STRUCTURAL PLASTICITY IN A PICORNAVIRUS CAPSID JRNL TITL 2 REVEALED BY A MASSIVELY EXPANDED EQUINE RHINITIS A VIRUS JRNL TITL 3 PARTICLE. JRNL REF J.VIROL. V. 88 6093 2014 JRNL REFN ISSN 0022-538X JRNL PMID 24648455 JRNL DOI 10.1128/JVI.01979-13 REMARK 2 REMARK 2 RESOLUTION. 17.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SPIDER REMARK 3 RECONSTRUCTION SCHEMA : PROJECTION MATCHING REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 2WFF REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : X-RAY REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : RIGID BODY REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 1.71 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : 1.71 REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 17 REMARK 3 NUMBER OF PARTICLES : 260 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING, EACH PARTICLE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: THIS IS THE SECOND PART FOR CHAIN 3 REMARK 4 REMARK 4 4CWK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 5 REMARK 5 THIS ENTRY WITH OTHER SPLIT ENTRIES HAVE BEEN CONSOLIDATED INTO A REMARK 5 COMBINED FILE FOR COMPLETE REPRESENTATION. NO COORDINATES HAVE BEEN REMARK 5 CHANGED. REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-MAY-14. REMARK 100 THE PDBE ID CODE IS EBI-60226. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : NULL REMARK 245 NAME OF SAMPLE : EQUINE RHINITIS A VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 2.0 REMARK 245 SAMPLE SUPPORT DETAILS : HOLEY CARBON REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : NULL REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 01-JAN-11 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 25 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TECNAI F20 REMARK 245 DETECTOR TYPE : GATAN US4000SP REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 15 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : 87209 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 119 CE LYS A 119 NZ 0.184 REMARK 500 PHE A 120 N PHE A 120 CA 0.127 REMARK 500 LYS B 119 CE LYS B 119 NZ 0.184 REMARK 500 PHE B 120 N PHE B 120 CA 0.126 REMARK 500 LYS C 119 CE LYS C 119 NZ 0.185 REMARK 500 PHE C 120 N PHE C 120 CA 0.126 REMARK 500 LYS D 119 CE LYS D 119 NZ 0.185 REMARK 500 PHE D 120 N PHE D 120 CA 0.127 REMARK 500 LYS E 119 CE LYS E 119 NZ 0.185 REMARK 500 PHE E 120 N PHE E 120 CA 0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 119 CB - CA - C ANGL. DEV. = 13.1 DEGREES REMARK 500 LYS A 119 CD - CE - NZ ANGL. DEV. = 17.3 DEGREES REMARK 500 PHE A 120 CB - CA - C ANGL. DEV. = -16.7 DEGREES REMARK 500 GLY A 149 N - CA - C ANGL. DEV. = -22.5 DEGREES REMARK 500 LYS B 119 CB - CA - C ANGL. DEV. = 13.0 DEGREES REMARK 500 LYS B 119 CD - CE - NZ ANGL. DEV. = 17.3 DEGREES REMARK 500 PHE B 120 CB - CA - C ANGL. DEV. = -16.7 DEGREES REMARK 500 PHE B 120 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 GLY B 149 N - CA - C ANGL. DEV. = -22.5 DEGREES REMARK 500 LYS C 119 CB - CA - C ANGL. DEV. = 13.1 DEGREES REMARK 500 LYS C 119 CD - CE - NZ ANGL. DEV. = 17.3 DEGREES REMARK 500 PHE C 120 CB - CA - C ANGL. DEV. = -16.7 DEGREES REMARK 500 GLY C 149 N - CA - C ANGL. DEV. = -22.6 DEGREES REMARK 500 LYS D 119 CB - CA - C ANGL. DEV. = 13.0 DEGREES REMARK 500 LYS D 119 CD - CE - NZ ANGL. DEV. = 17.3 DEGREES REMARK 500 PHE D 120 CB - CA - C ANGL. DEV. = -16.7 DEGREES REMARK 500 PHE D 120 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 GLY D 149 N - CA - C ANGL. DEV. = -22.5 DEGREES REMARK 500 LYS E 119 CB - CA - C ANGL. DEV. = 13.1 DEGREES REMARK 500 LYS E 119 CD - CE - NZ ANGL. DEV. = 17.3 DEGREES REMARK 500 PHE E 120 CB - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 PHE E 120 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 GLY E 149 N - CA - C ANGL. DEV. = -22.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 11 -100.26 39.94 REMARK 500 PHE A 14 -102.94 -71.39 REMARK 500 MET A 15 97.02 102.96 REMARK 500 SER A 17 50.46 -165.62 REMARK 500 PRO A 19 84.23 -67.48 REMARK 500 ASP A 20 131.46 156.36 REMARK 500 ASN A 21 -131.89 -61.72 REMARK 500 LYS A 28 15.64 58.02 REMARK 500 GLN A 49 43.34 -86.54 REMARK 500 THR A 50 127.11 -178.51 REMARK 500 SER A 57 -30.68 69.10 REMARK 500 PRO A 60 65.77 -105.17 REMARK 500 TYR A 61 148.63 171.67 REMARK 500 ASN A 66 38.95 -90.00 REMARK 500 THR A 67 18.27 -148.56 REMARK 500 SER A 68 -103.52 -93.07 REMARK 500 GLU A 71 152.84 -39.95 REMARK 500 MET A 76 143.66 -172.85 REMARK 500 VAL A 78 80.91 -47.32 REMARK 500 LEU A 80 22.54 -53.98 REMARK 500 SER A 81 14.18 -147.76 REMARK 500 LEU A 85 29.75 -75.84 REMARK 500 SER A 95 7.28 -64.05 REMARK 500 PHE A 97 -147.92 -117.87 REMARK 500 ALA A 98 -18.80 -150.69 REMARK 500 ALA A 113 151.23 -31.74 REMARK 500 LYS A 119 -159.49 54.72 REMARK 500 PHE A 120 175.44 143.58 REMARK 500 HIS A 128 -79.49 -178.56 REMARK 500 SER A 129 -159.83 -64.18 REMARK 500 ALA A 131 94.39 78.16 REMARK 500 LEU A 150 -25.70 53.73 REMARK 500 ASN A 151 -72.03 -66.62 REMARK 500 SER A 152 22.29 95.10 REMARK 500 ALA A 153 173.84 147.70 REMARK 500 PRO A 159 -173.16 -64.07 REMARK 500 ALA A 174 103.91 -25.84 REMARK 500 ASN A 178 -74.06 -81.73 REMARK 500 THR A 189 99.70 -175.43 REMARK 500 LEU A 191 154.40 -29.76 REMARK 500 THR A 194 -38.27 -38.40 REMARK 500 SER A 200 -88.59 -73.61 REMARK 500 HIS A 218 103.88 77.37 REMARK 500 PRO A 223 -142.64 -69.84 REMARK 500 SER B 11 -100.30 40.00 REMARK 500 PHE B 14 -102.91 -71.46 REMARK 500 MET B 15 97.03 103.00 REMARK 500 SER B 17 50.42 -165.53 REMARK 500 PRO B 19 84.19 -67.40 REMARK 500 ASP B 20 131.43 156.34 REMARK 500 REMARK 500 THIS ENTRY HAS 220 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 26 0.11 SIDE CHAIN REMARK 500 PHE A 53 0.09 SIDE CHAIN REMARK 500 TYR B 26 0.11 SIDE CHAIN REMARK 500 PHE B 53 0.09 SIDE CHAIN REMARK 500 TYR C 26 0.11 SIDE CHAIN REMARK 500 PHE C 53 0.09 SIDE CHAIN REMARK 500 TYR D 26 0.11 SIDE CHAIN REMARK 500 PHE D 53 0.09 SIDE CHAIN REMARK 500 TYR E 26 0.11 SIDE CHAIN REMARK 500 PHE E 53 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 SER A 11 24.6 L L OUTSIDE RANGE REMARK 500 ASN A 21 21.8 L L OUTSIDE RANGE REMARK 500 LEU A 80 23.5 L L OUTSIDE RANGE REMARK 500 SER A 95 23.2 L L OUTSIDE RANGE REMARK 500 TRP A 146 24.9 L L OUTSIDE RANGE REMARK 500 LEU A 150 23.9 L L OUTSIDE RANGE REMARK 500 ASN A 199 23.6 L L OUTSIDE RANGE REMARK 500 SER B 11 24.6 L L OUTSIDE RANGE REMARK 500 ASN B 21 21.8 L L OUTSIDE RANGE REMARK 500 LEU B 80 23.6 L L OUTSIDE RANGE REMARK 500 SER B 95 23.1 L L OUTSIDE RANGE REMARK 500 TRP B 146 24.8 L L OUTSIDE RANGE REMARK 500 LEU B 150 23.9 L L OUTSIDE RANGE REMARK 500 ASN B 199 23.7 L L OUTSIDE RANGE REMARK 500 SER C 11 24.6 L L OUTSIDE RANGE REMARK 500 ASN C 21 21.8 L L OUTSIDE RANGE REMARK 500 LEU C 80 23.6 L L OUTSIDE RANGE REMARK 500 SER C 95 23.1 L L OUTSIDE RANGE REMARK 500 TRP C 146 24.8 L L OUTSIDE RANGE REMARK 500 LEU C 150 23.9 L L OUTSIDE RANGE REMARK 500 ASN C 199 23.7 L L OUTSIDE RANGE REMARK 500 SER D 11 24.6 L L OUTSIDE RANGE REMARK 500 ASN D 21 21.8 L L OUTSIDE RANGE REMARK 500 LEU D 80 23.5 L L OUTSIDE RANGE REMARK 500 SER D 95 23.2 L L OUTSIDE RANGE REMARK 500 TRP D 146 24.8 L L OUTSIDE RANGE REMARK 500 LEU D 150 23.9 L L OUTSIDE RANGE REMARK 500 ASN D 199 23.7 L L OUTSIDE RANGE REMARK 500 SER E 11 24.6 L L OUTSIDE RANGE REMARK 500 ASN E 21 21.8 L L OUTSIDE RANGE REMARK 500 LEU E 80 23.5 L L OUTSIDE RANGE REMARK 500 SER E 95 23.1 L L OUTSIDE RANGE REMARK 500 TRP E 146 24.8 L L OUTSIDE RANGE REMARK 500 LEU E 150 23.9 L L OUTSIDE RANGE REMARK 500 ASN E 199 23.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 5-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 6-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CWG RELATED DB: PDB REMARK 900 THE LIMITS OF STRUCTURAL PLASTICITY IN A PICORNAVIRUS REMARK 900 CAPSID REVEALED BY A MASSIVELY EXPANDED EQUINE RHINITIS REMARK 900 A VIRUS PARTICLE REMARK 900 RELATED ID: 4CWH RELATED DB: PDB REMARK 900 THE LIMITS OF STRUCTURAL PLASTICITY IN A PICORNAVIRUS REMARK 900 CAPSID REVEALED BY A MASSIVELY EXPANDED EQUINE RHINITIS REMARK 900 A VIRUS PARTICLE REMARK 900 RELATED ID: 4CWI RELATED DB: PDB REMARK 900 THE LIMITS OF STRUCTURAL PLASTICITY IN A PICORNAVIRUS REMARK 900 CAPSID REVEALED BY A MASSIVELY EXPANDED EQUINE RHINITIS REMARK 900 A VIRUS PARTICLE REMARK 900 RELATED ID: 4CWJ RELATED DB: PDB REMARK 900 THE LIMITS OF STRUCTURAL PLASTICITY IN A PICORNAVIRUS REMARK 900 CAPSID REVEALED BY A MASSIVELY EXPANDED EQUINE RHINITIS REMARK 900 A VIRUS PARTICLE REMARK 900 RELATED ID: 4CWL RELATED DB: PDB REMARK 900 THE LIMITS OF STRUCTURAL PLASTICITY IN A PICORNAVIRUS REMARK 900 CAPSID REVEALED BY A MASSIVELY EXPANDED EQUINE RHINITIS REMARK 900 A VIRUS PARTICLE REMARK 900 RELATED ID: EMD-2389 RELATED DB: EMDB DBREF 4CWK A 1 226 UNP Q91B37 Q91B37_9PICO 311 536 DBREF 4CWK B 1 226 UNP Q91B37 Q91B37_9PICO 311 536 DBREF 4CWK C 1 226 UNP Q91B37 Q91B37_9PICO 311 536 DBREF 4CWK D 1 226 UNP Q91B37 Q91B37_9PICO 311 536 DBREF 4CWK E 1 226 UNP Q91B37 Q91B37_9PICO 311 536 SEQRES 1 A 226 ALA PRO ILE ARG VAL VAL SER VAL PRO GLU SER ASP SER SEQRES 2 A 226 PHE MET SER SER VAL PRO ASP ASN SER THR PRO LEU TYR SEQRES 3 A 226 PRO LYS VAL VAL VAL PRO PRO ARG GLN VAL PRO GLY ARG SEQRES 4 A 226 PHE THR ASN PHE ILE ASP VAL ALA LYS GLN THR TYR SER SEQRES 5 A 226 PHE CYS SER ILE SER GLY LYS PRO TYR PHE GLU VAL THR SEQRES 6 A 226 ASN THR SER GLY ASP GLU PRO LEU PHE GLN MET ASP VAL SEQRES 7 A 226 SER LEU SER ALA ALA GLU LEU HIS GLY THR TYR VAL ALA SEQRES 8 A 226 SER LEU SER SER PHE PHE ALA GLN TYR ARG GLY SER LEU SEQRES 9 A 226 ASN PHE ASN PHE ILE PHE THR GLY ALA ALA ALA THR LYS SEQRES 10 A 226 ALA LYS PHE LEU VAL ALA PHE VAL PRO PRO HIS SER ALA SEQRES 11 A 226 ALA PRO LYS THR ARG ASP GLU ALA MET ALA CYS ILE HIS SEQRES 12 A 226 ALA VAL TRP ASP VAL GLY LEU ASN SER ALA PHE SER PHE SEQRES 13 A 226 ASN VAL PRO TYR SER SER PRO ALA ASP PHE MET ALA VAL SEQRES 14 A 226 TYR SER ALA GLU ALA THR VAL VAL ASN VAL SER GLY TRP SEQRES 15 A 226 LEU GLN VAL TYR ALA LEU THR ALA LEU THR SER THR ASP SEQRES 16 A 226 ILE ALA VAL ASN SER LYS GLY ARG VAL LEU VAL ALA VAL SEQRES 17 A 226 SER ALA GLY PRO ASP PHE SER LEU ARG HIS PRO VAL ASP SEQRES 18 A 226 LEU PRO ASP LYS GLN SEQRES 1 B 226 ALA PRO ILE ARG VAL VAL SER VAL PRO GLU SER ASP SER SEQRES 2 B 226 PHE MET SER SER VAL PRO ASP ASN SER THR PRO LEU TYR SEQRES 3 B 226 PRO LYS VAL VAL VAL PRO PRO ARG GLN VAL PRO GLY ARG SEQRES 4 B 226 PHE THR ASN PHE ILE ASP VAL ALA LYS GLN THR TYR SER SEQRES 5 B 226 PHE CYS SER ILE SER GLY LYS PRO TYR PHE GLU VAL THR SEQRES 6 B 226 ASN THR SER GLY ASP GLU PRO LEU PHE GLN MET ASP VAL SEQRES 7 B 226 SER LEU SER ALA ALA GLU LEU HIS GLY THR TYR VAL ALA SEQRES 8 B 226 SER LEU SER SER PHE PHE ALA GLN TYR ARG GLY SER LEU SEQRES 9 B 226 ASN PHE ASN PHE ILE PHE THR GLY ALA ALA ALA THR LYS SEQRES 10 B 226 ALA LYS PHE LEU VAL ALA PHE VAL PRO PRO HIS SER ALA SEQRES 11 B 226 ALA PRO LYS THR ARG ASP GLU ALA MET ALA CYS ILE HIS SEQRES 12 B 226 ALA VAL TRP ASP VAL GLY LEU ASN SER ALA PHE SER PHE SEQRES 13 B 226 ASN VAL PRO TYR SER SER PRO ALA ASP PHE MET ALA VAL SEQRES 14 B 226 TYR SER ALA GLU ALA THR VAL VAL ASN VAL SER GLY TRP SEQRES 15 B 226 LEU GLN VAL TYR ALA LEU THR ALA LEU THR SER THR ASP SEQRES 16 B 226 ILE ALA VAL ASN SER LYS GLY ARG VAL LEU VAL ALA VAL SEQRES 17 B 226 SER ALA GLY PRO ASP PHE SER LEU ARG HIS PRO VAL ASP SEQRES 18 B 226 LEU PRO ASP LYS GLN SEQRES 1 C 226 ALA PRO ILE ARG VAL VAL SER VAL PRO GLU SER ASP SER SEQRES 2 C 226 PHE MET SER SER VAL PRO ASP ASN SER THR PRO LEU TYR SEQRES 3 C 226 PRO LYS VAL VAL VAL PRO PRO ARG GLN VAL PRO GLY ARG SEQRES 4 C 226 PHE THR ASN PHE ILE ASP VAL ALA LYS GLN THR TYR SER SEQRES 5 C 226 PHE CYS SER ILE SER GLY LYS PRO TYR PHE GLU VAL THR SEQRES 6 C 226 ASN THR SER GLY ASP GLU PRO LEU PHE GLN MET ASP VAL SEQRES 7 C 226 SER LEU SER ALA ALA GLU LEU HIS GLY THR TYR VAL ALA SEQRES 8 C 226 SER LEU SER SER PHE PHE ALA GLN TYR ARG GLY SER LEU SEQRES 9 C 226 ASN PHE ASN PHE ILE PHE THR GLY ALA ALA ALA THR LYS SEQRES 10 C 226 ALA LYS PHE LEU VAL ALA PHE VAL PRO PRO HIS SER ALA SEQRES 11 C 226 ALA PRO LYS THR ARG ASP GLU ALA MET ALA CYS ILE HIS SEQRES 12 C 226 ALA VAL TRP ASP VAL GLY LEU ASN SER ALA PHE SER PHE SEQRES 13 C 226 ASN VAL PRO TYR SER SER PRO ALA ASP PHE MET ALA VAL SEQRES 14 C 226 TYR SER ALA GLU ALA THR VAL VAL ASN VAL SER GLY TRP SEQRES 15 C 226 LEU GLN VAL TYR ALA LEU THR ALA LEU THR SER THR ASP SEQRES 16 C 226 ILE ALA VAL ASN SER LYS GLY ARG VAL LEU VAL ALA VAL SEQRES 17 C 226 SER ALA GLY PRO ASP PHE SER LEU ARG HIS PRO VAL ASP SEQRES 18 C 226 LEU PRO ASP LYS GLN SEQRES 1 D 226 ALA PRO ILE ARG VAL VAL SER VAL PRO GLU SER ASP SER SEQRES 2 D 226 PHE MET SER SER VAL PRO ASP ASN SER THR PRO LEU TYR SEQRES 3 D 226 PRO LYS VAL VAL VAL PRO PRO ARG GLN VAL PRO GLY ARG SEQRES 4 D 226 PHE THR ASN PHE ILE ASP VAL ALA LYS GLN THR TYR SER SEQRES 5 D 226 PHE CYS SER ILE SER GLY LYS PRO TYR PHE GLU VAL THR SEQRES 6 D 226 ASN THR SER GLY ASP GLU PRO LEU PHE GLN MET ASP VAL SEQRES 7 D 226 SER LEU SER ALA ALA GLU LEU HIS GLY THR TYR VAL ALA SEQRES 8 D 226 SER LEU SER SER PHE PHE ALA GLN TYR ARG GLY SER LEU SEQRES 9 D 226 ASN PHE ASN PHE ILE PHE THR GLY ALA ALA ALA THR LYS SEQRES 10 D 226 ALA LYS PHE LEU VAL ALA PHE VAL PRO PRO HIS SER ALA SEQRES 11 D 226 ALA PRO LYS THR ARG ASP GLU ALA MET ALA CYS ILE HIS SEQRES 12 D 226 ALA VAL TRP ASP VAL GLY LEU ASN SER ALA PHE SER PHE SEQRES 13 D 226 ASN VAL PRO TYR SER SER PRO ALA ASP PHE MET ALA VAL SEQRES 14 D 226 TYR SER ALA GLU ALA THR VAL VAL ASN VAL SER GLY TRP SEQRES 15 D 226 LEU GLN VAL TYR ALA LEU THR ALA LEU THR SER THR ASP SEQRES 16 D 226 ILE ALA VAL ASN SER LYS GLY ARG VAL LEU VAL ALA VAL SEQRES 17 D 226 SER ALA GLY PRO ASP PHE SER LEU ARG HIS PRO VAL ASP SEQRES 18 D 226 LEU PRO ASP LYS GLN SEQRES 1 E 226 ALA PRO ILE ARG VAL VAL SER VAL PRO GLU SER ASP SER SEQRES 2 E 226 PHE MET SER SER VAL PRO ASP ASN SER THR PRO LEU TYR SEQRES 3 E 226 PRO LYS VAL VAL VAL PRO PRO ARG GLN VAL PRO GLY ARG SEQRES 4 E 226 PHE THR ASN PHE ILE ASP VAL ALA LYS GLN THR TYR SER SEQRES 5 E 226 PHE CYS SER ILE SER GLY LYS PRO TYR PHE GLU VAL THR SEQRES 6 E 226 ASN THR SER GLY ASP GLU PRO LEU PHE GLN MET ASP VAL SEQRES 7 E 226 SER LEU SER ALA ALA GLU LEU HIS GLY THR TYR VAL ALA SEQRES 8 E 226 SER LEU SER SER PHE PHE ALA GLN TYR ARG GLY SER LEU SEQRES 9 E 226 ASN PHE ASN PHE ILE PHE THR GLY ALA ALA ALA THR LYS SEQRES 10 E 226 ALA LYS PHE LEU VAL ALA PHE VAL PRO PRO HIS SER ALA SEQRES 11 E 226 ALA PRO LYS THR ARG ASP GLU ALA MET ALA CYS ILE HIS SEQRES 12 E 226 ALA VAL TRP ASP VAL GLY LEU ASN SER ALA PHE SER PHE SEQRES 13 E 226 ASN VAL PRO TYR SER SER PRO ALA ASP PHE MET ALA VAL SEQRES 14 E 226 TYR SER ALA GLU ALA THR VAL VAL ASN VAL SER GLY TRP SEQRES 15 E 226 LEU GLN VAL TYR ALA LEU THR ALA LEU THR SER THR ASP SEQRES 16 E 226 ILE ALA VAL ASN SER LYS GLY ARG VAL LEU VAL ALA VAL SEQRES 17 E 226 SER ALA GLY PRO ASP PHE SER LEU ARG HIS PRO VAL ASP SEQRES 18 E 226 LEU PRO ASP LYS GLN HELIX 1 1 ASN A 42 GLN A 49 1 8 HELIX 2 2 ALA A 83 GLY A 87 5 5 HELIX 3 3 THR A 88 SER A 95 1 8 HELIX 4 4 THR A 134 MET A 139 1 6 HELIX 5 5 ASN B 42 GLN B 49 1 8 HELIX 6 6 ALA B 83 GLY B 87 5 5 HELIX 7 7 THR B 88 SER B 95 1 8 HELIX 8 8 THR B 134 MET B 139 1 6 HELIX 9 9 ASN C 42 GLN C 49 1 8 HELIX 10 10 ALA C 83 GLY C 87 5 5 HELIX 11 11 THR C 88 SER C 95 1 8 HELIX 12 12 THR C 134 MET C 139 1 6 HELIX 13 13 ASN D 42 GLN D 49 1 8 HELIX 14 14 ALA D 83 GLY D 87 5 5 HELIX 15 15 THR D 88 SER D 95 1 8 HELIX 16 16 THR D 134 MET D 139 1 6 HELIX 17 17 ASN E 42 GLN E 49 1 8 HELIX 18 18 ALA E 83 GLY E 87 5 5 HELIX 19 19 THR E 88 SER E 95 1 8 HELIX 20 20 THR E 134 MET E 139 1 6 SHEET 1 AA 6 ILE A 3 SER A 7 0 SHEET 2 AA 6 ILE E 3 SER E 7 1 O ARG E 4 N ILE A 3 SHEET 3 AA 6 ILE D 3 SER D 7 1 O ARG D 4 N ILE E 3 SHEET 4 AA 6 ILE C 3 SER C 7 1 O ARG C 4 N ILE D 3 SHEET 5 AA 6 ILE B 3 SER B 7 1 O ARG B 4 N ILE C 3 SHEET 6 AA 6 ILE A 3 SER A 7 1 O ARG A 4 N ILE B 3 SHEET 1 AB 4 PHE A 62 VAL A 64 0 SHEET 2 AB 4 GLY A 202 SER A 209 -1 O GLY A 202 N VAL A 64 SHEET 3 AB 4 LEU A 104 PHE A 110 -1 O ASN A 105 N SER A 209 SHEET 4 AB 4 SER A 155 VAL A 158 -1 O PHE A 156 N PHE A 106 SHEET 1 AC 4 PRO A 72 ASP A 77 0 SHEET 2 AC 4 TRP A 182 TYR A 186 -1 O LEU A 183 N MET A 76 SHEET 3 AC 4 LEU A 121 VAL A 125 -1 O LEU A 121 N TYR A 186 SHEET 4 AC 4 ILE A 142 VAL A 145 -1 O ILE A 142 N PHE A 124 SHEET 1 AD 3 MET A 167 ALA A 168 0 SHEET 2 AD 3 PHE A 97 TYR A 100 -1 O TYR A 100 N MET A 167 SHEET 3 AD 3 LEU A 216 PRO A 219 -1 O ARG A 217 N GLN A 99 SHEET 1 AE 2 THR A 116 LYS A 117 0 SHEET 2 AE 2 THR A 192 SER A 193 -1 O THR A 192 N LYS A 117 SHEET 1 BA 4 PHE B 62 VAL B 64 0 SHEET 2 BA 4 GLY B 202 SER B 209 -1 O GLY B 202 N VAL B 64 SHEET 3 BA 4 LEU B 104 PHE B 110 -1 O ASN B 105 N SER B 209 SHEET 4 BA 4 SER B 155 VAL B 158 -1 O PHE B 156 N PHE B 106 SHEET 1 BB 4 PRO B 72 ASP B 77 0 SHEET 2 BB 4 TRP B 182 TYR B 186 -1 O LEU B 183 N MET B 76 SHEET 3 BB 4 LEU B 121 VAL B 125 -1 O LEU B 121 N TYR B 186 SHEET 4 BB 4 ILE B 142 VAL B 145 -1 O ILE B 142 N PHE B 124 SHEET 1 BC 3 MET B 167 ALA B 168 0 SHEET 2 BC 3 PHE B 97 TYR B 100 -1 O TYR B 100 N MET B 167 SHEET 3 BC 3 LEU B 216 PRO B 219 -1 O ARG B 217 N GLN B 99 SHEET 1 BD 2 THR B 116 LYS B 117 0 SHEET 2 BD 2 THR B 192 SER B 193 -1 O THR B 192 N LYS B 117 SHEET 1 CA 4 PHE C 62 VAL C 64 0 SHEET 2 CA 4 GLY C 202 SER C 209 -1 O GLY C 202 N VAL C 64 SHEET 3 CA 4 LEU C 104 PHE C 110 -1 O ASN C 105 N SER C 209 SHEET 4 CA 4 SER C 155 VAL C 158 -1 O PHE C 156 N PHE C 106 SHEET 1 CB 4 PRO C 72 ASP C 77 0 SHEET 2 CB 4 TRP C 182 TYR C 186 -1 O LEU C 183 N MET C 76 SHEET 3 CB 4 LEU C 121 VAL C 125 -1 O LEU C 121 N TYR C 186 SHEET 4 CB 4 ILE C 142 VAL C 145 -1 O ILE C 142 N PHE C 124 SHEET 1 CC 3 MET C 167 ALA C 168 0 SHEET 2 CC 3 PHE C 97 TYR C 100 -1 O TYR C 100 N MET C 167 SHEET 3 CC 3 LEU C 216 PRO C 219 -1 O ARG C 217 N GLN C 99 SHEET 1 CD 2 THR C 116 LYS C 117 0 SHEET 2 CD 2 THR C 192 SER C 193 -1 O THR C 192 N LYS C 117 SHEET 1 DA 4 PHE D 62 VAL D 64 0 SHEET 2 DA 4 GLY D 202 SER D 209 -1 O GLY D 202 N VAL D 64 SHEET 3 DA 4 LEU D 104 PHE D 110 -1 O ASN D 105 N SER D 209 SHEET 4 DA 4 SER D 155 VAL D 158 -1 O PHE D 156 N PHE D 106 SHEET 1 DB 4 PRO D 72 ASP D 77 0 SHEET 2 DB 4 TRP D 182 TYR D 186 -1 O LEU D 183 N MET D 76 SHEET 3 DB 4 LEU D 121 VAL D 125 -1 O LEU D 121 N TYR D 186 SHEET 4 DB 4 ILE D 142 VAL D 145 -1 O ILE D 142 N PHE D 124 SHEET 1 DC 3 MET D 167 ALA D 168 0 SHEET 2 DC 3 PHE D 97 TYR D 100 -1 O TYR D 100 N MET D 167 SHEET 3 DC 3 LEU D 216 PRO D 219 -1 O ARG D 217 N GLN D 99 SHEET 1 DD 2 THR D 116 LYS D 117 0 SHEET 2 DD 2 THR D 192 SER D 193 -1 O THR D 192 N LYS D 117 SHEET 1 EA 4 PHE E 62 VAL E 64 0 SHEET 2 EA 4 GLY E 202 SER E 209 -1 O GLY E 202 N VAL E 64 SHEET 3 EA 4 LEU E 104 PHE E 110 -1 O ASN E 105 N SER E 209 SHEET 4 EA 4 SER E 155 VAL E 158 -1 O PHE E 156 N PHE E 106 SHEET 1 EB 4 PRO E 72 ASP E 77 0 SHEET 2 EB 4 TRP E 182 TYR E 186 -1 O LEU E 183 N MET E 76 SHEET 3 EB 4 LEU E 121 VAL E 125 -1 O LEU E 121 N TYR E 186 SHEET 4 EB 4 ILE E 142 VAL E 145 -1 O ILE E 142 N PHE E 124 SHEET 1 EC 3 MET E 167 ALA E 168 0 SHEET 2 EC 3 PHE E 97 TYR E 100 -1 O TYR E 100 N MET E 167 SHEET 3 EC 3 LEU E 216 PRO E 219 -1 O ARG E 217 N GLN E 99 SHEET 1 ED 2 THR E 116 LYS E 117 0 SHEET 2 ED 2 THR E 192 SER E 193 -1 O THR E 192 N LYS E 117 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000