HEADER VIRAL PROTEIN 04-APR-14 4CX8 TITLE MONOMERIC PSEUDORABIES VIRUS PROTEASE PUL26N AT 2.5 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PSEUDORABIES VIRUS PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-224; COMPND 5 EC: 3.4.21.97; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: N-TERMINAL (HIS)6-TAG WITH THROMBIN-LINKER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUID HERPESVIRUS 1; SOURCE 3 ORGANISM_COMMON: PSEUDORABIES VIRUS; SOURCE 4 ORGANISM_TAXID: 10345; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-28A KEYWDS VIRAL PROTEIN, ASSEMBLIN, UL26, PRV EXPDTA X-RAY DIFFRACTION AUTHOR M.ZUEHLSDORF,S.WERTEN,G.J.PALM,W.HINRICHS REVDAT 4 12-AUG-15 4CX8 1 JRNL REVDAT 3 22-JUL-15 4CX8 1 JRNL REVDAT 2 15-JUL-15 4CX8 1 TITLE JRNL REMARK MASTER REVDAT 1 20-MAY-15 4CX8 0 JRNL AUTH M.ZUHLSDORF,S.WERTEN,B.G.KLUPP,G.J.PALM,T.C.METTENLEITER, JRNL AUTH 2 W.HINRICHS JRNL TITL DIMERIZATION-INDUCED ALLOSTERIC CHANGES OF THE OXYANION- JRNL TITL 2 HOLE LOOP ACTIVATE THE PSEUDORABIES VIRUS ASSEMBLIN PUL26N, JRNL TITL 3 A HERPESVIRUS SERINE PROTEASE. JRNL REF PLOS PATHOG. V. 11 5045 2015 JRNL REFN ISSN 1553-7366 JRNL PMID 26161660 JRNL DOI 10.1371/JOURNAL.PPAT.1005045 REMARK 2 REMARK 2 RESOLUTION. 2.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 97.75 REMARK 3 NUMBER OF REFLECTIONS : 17352 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.20078 REMARK 3 R VALUE (WORKING SET) : 0.19819 REMARK 3 FREE R VALUE : 0.25215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.8 REMARK 3 FREE R VALUE TEST SET COUNT : 878 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.527 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.593 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1129 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.334 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.314 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3123 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.9 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.88 REMARK 3 B22 (A**2) : 1.45 REMARK 3 B33 (A**2) : 0.43 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.423 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.279 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.232 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.997 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3189 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3048 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4354 ; 1.788 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6944 ; 0.877 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 412 ; 7.436 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;29.613 ;21.364 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 454 ;17.936 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;18.892 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 502 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3636 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 726 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1666 ; 1.442 ; 2.292 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1665 ; 1.443 ; 2.293 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2072 ; 2.373 ; 3.433 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1523 ; 1.451 ; 2.382 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 42 REMARK 3 ORIGIN FOR THE GROUP (A): -11.8184 -5.5380 12.7368 REMARK 3 T TENSOR REMARK 3 T11: 0.3307 T22: 0.2804 REMARK 3 T33: 0.2454 T12: 0.0369 REMARK 3 T13: -0.0097 T23: -0.1037 REMARK 3 L TENSOR REMARK 3 L11: 3.4468 L22: 8.6238 REMARK 3 L33: 4.5866 L12: -2.9636 REMARK 3 L13: -0.5946 L23: -0.7814 REMARK 3 S TENSOR REMARK 3 S11: -0.1308 S12: -0.3484 S13: 0.6240 REMARK 3 S21: 0.2093 S22: 0.3027 S23: 0.3336 REMARK 3 S31: -0.8621 S32: -0.6690 S33: -0.1719 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): -6.8121 -15.9448 15.8577 REMARK 3 T TENSOR REMARK 3 T11: 0.2082 T22: 0.2539 REMARK 3 T33: 0.0341 T12: 0.0142 REMARK 3 T13: 0.0123 T23: -0.0529 REMARK 3 L TENSOR REMARK 3 L11: 6.7729 L22: 5.0312 REMARK 3 L33: 2.4048 L12: -4.4447 REMARK 3 L13: -0.5315 L23: 1.3174 REMARK 3 S TENSOR REMARK 3 S11: -0.4462 S12: -0.7376 S13: 0.0327 REMARK 3 S21: 0.5475 S22: 0.3185 S23: 0.2123 REMARK 3 S31: -0.1092 S32: -0.0885 S33: 0.1278 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 130 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): -3.9145 -11.7960 12.1064 REMARK 3 T TENSOR REMARK 3 T11: 0.2415 T22: 0.1739 REMARK 3 T33: 0.1095 T12: 0.0354 REMARK 3 T13: -0.0192 T23: -0.0924 REMARK 3 L TENSOR REMARK 3 L11: 5.7555 L22: 4.9745 REMARK 3 L33: 5.4271 L12: -1.1075 REMARK 3 L13: 2.1477 L23: -0.7275 REMARK 3 S TENSOR REMARK 3 S11: -0.3009 S12: -0.3007 S13: 0.6272 REMARK 3 S21: 0.5920 S22: 0.2797 S23: -0.3878 REMARK 3 S31: -0.6243 S32: 0.0937 S33: 0.0212 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 188 A 224 REMARK 3 ORIGIN FOR THE GROUP (A): -12.4019 -24.6669 6.8744 REMARK 3 T TENSOR REMARK 3 T11: 0.2384 T22: 0.2326 REMARK 3 T33: 0.3752 T12: -0.0189 REMARK 3 T13: 0.1007 T23: 0.0573 REMARK 3 L TENSOR REMARK 3 L11: 4.9188 L22: 1.5994 REMARK 3 L33: 7.7840 L12: 0.4388 REMARK 3 L13: 2.6999 L23: 1.6708 REMARK 3 S TENSOR REMARK 3 S11: -0.0231 S12: -0.3233 S13: -1.0647 REMARK 3 S21: 0.3684 S22: 0.0753 S23: 0.3569 REMARK 3 S31: 0.6116 S32: -0.3974 S33: -0.0522 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 32 REMARK 3 ORIGIN FOR THE GROUP (A): -25.3113 -6.5195 38.0211 REMARK 3 T TENSOR REMARK 3 T11: 0.3235 T22: 0.5587 REMARK 3 T33: 0.1811 T12: 0.0190 REMARK 3 T13: 0.0644 T23: -0.2847 REMARK 3 L TENSOR REMARK 3 L11: 4.9177 L22: 9.3281 REMARK 3 L33: 7.4174 L12: 5.8614 REMARK 3 L13: 4.9903 L23: 5.8381 REMARK 3 S TENSOR REMARK 3 S11: 0.2476 S12: -0.2268 S13: 0.3096 REMARK 3 S21: 0.1251 S22: -0.6011 S23: 0.5678 REMARK 3 S31: 0.2365 S32: -0.6527 S33: 0.3535 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 33 B 165 REMARK 3 ORIGIN FOR THE GROUP (A): -17.6119 2.4566 39.7905 REMARK 3 T TENSOR REMARK 3 T11: 0.2177 T22: 0.4648 REMARK 3 T33: 0.1779 T12: 0.0470 REMARK 3 T13: -0.0223 T23: -0.2081 REMARK 3 L TENSOR REMARK 3 L11: 1.0747 L22: 5.2606 REMARK 3 L33: 6.6835 L12: 0.5806 REMARK 3 L13: 1.8113 L23: 5.2082 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: 0.0969 S13: -0.0079 REMARK 3 S21: -0.2100 S22: -0.0912 S23: 0.1582 REMARK 3 S31: -0.1802 S32: 0.0227 S33: 0.1014 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 166 B 212 REMARK 3 ORIGIN FOR THE GROUP (A): -14.3372 2.6153 40.4317 REMARK 3 T TENSOR REMARK 3 T11: 0.3597 T22: 0.7468 REMARK 3 T33: 0.3087 T12: -0.0599 REMARK 3 T13: -0.0234 T23: -0.2387 REMARK 3 L TENSOR REMARK 3 L11: 6.7597 L22: 3.9199 REMARK 3 L33: 8.4181 L12: -0.7568 REMARK 3 L13: 1.0431 L23: 5.4541 REMARK 3 S TENSOR REMARK 3 S11: 0.1892 S12: -0.0498 S13: 0.2198 REMARK 3 S21: -0.1604 S22: -0.1127 S23: -0.0774 REMARK 3 S31: -0.3205 S32: 0.1172 S33: -0.0765 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 213 B 223 REMARK 3 ORIGIN FOR THE GROUP (A): -33.9285 10.4097 50.4634 REMARK 3 T TENSOR REMARK 3 T11: 0.5516 T22: 1.0548 REMARK 3 T33: 0.7460 T12: 0.0749 REMARK 3 T13: 0.1315 T23: -0.3320 REMARK 3 L TENSOR REMARK 3 L11: 6.8238 L22: 9.3465 REMARK 3 L33: 12.7620 L12: -6.6497 REMARK 3 L13: -4.5880 L23: 9.7246 REMARK 3 S TENSOR REMARK 3 S11: -0.4538 S12: -0.0061 S13: -0.3527 REMARK 3 S21: 0.3043 S22: -0.0801 S23: 0.4944 REMARK 3 S31: -0.0191 S32: -0.3608 S33: 0.5339 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. VALUES WITH TLS ADDED REMARK 4 REMARK 4 4CX8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-APR-14. REMARK 100 THE PDBE ID CODE IS EBI-59952. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18230 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.53 REMARK 200 RESOLUTION RANGE LOW (A) : 80.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.8 REMARK 200 R MERGE (I) : 0.08 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.29 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.3 REMARK 200 R MERGE FOR SHELL (I) : 0.66 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.06 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: DIMERIC PRV PROTEASE, YET TO BE DEPOSITED REMARK 200 REMARK 200 REMARK: STARTING MODEL FOR DIMERIC PRV PROTEASE IS WWPDB REMARK 200 ENTRY 1AT3 REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.5 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8, 14% PEG 20,000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.21850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.03900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.66850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.03900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.21850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.66850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASP A 16 REMARK 465 GLY A 17 REMARK 465 GLY A 18 REMARK 465 GLU A 19 REMARK 465 LEU A 20 REMARK 465 SER A 193 REMARK 465 THR A 194 REMARK 465 ALA A 195 REMARK 465 VAL A 196 REMARK 465 ASN A 197 REMARK 465 ASN A 198 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ASP B 14 REMARK 465 ARG B 15 REMARK 465 ASP B 16 REMARK 465 GLY B 17 REMARK 465 GLY B 18 REMARK 465 GLU B 19 REMARK 465 LEU B 20 REMARK 465 LEU B 192 REMARK 465 SER B 193 REMARK 465 THR B 194 REMARK 465 ALA B 195 REMARK 465 VAL B 196 REMARK 465 ASN B 197 REMARK 465 ASN B 198 REMARK 465 MET B 199 REMARK 465 LEU B 200 REMARK 465 GLN B 224 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 15 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 46 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 ARG A 176 CD NE CZ NH1 NH2 REMARK 470 ARG A 189 CG CD NE CZ NH1 NH2 REMARK 470 MET A 199 CG SD CE REMARK 470 ARG A 202 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 46 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 134 CG1 CG2 CD1 REMARK 470 ARG B 136 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 156 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 157 CG CD OE1 NE2 REMARK 470 GLU B 165 CG CD OE1 OE2 REMARK 470 SER B 183 OG REMARK 470 GLU B 185 CG CD OE1 OE2 REMARK 470 THR B 188 OG1 CG2 REMARK 470 ARG B 189 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 201 CG CD1 CD2 REMARK 470 ARG B 202 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 203 CG OD1 OD2 REMARK 470 ARG B 204 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 206 CG CD OE1 OE2 REMARK 470 THR B 221 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 48 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 96 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 96 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 212 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 212 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 13 -37.43 -35.08 REMARK 500 CYS A 47 38.15 -143.63 REMARK 500 ASN A 69 79.57 -161.94 REMARK 500 GLU A 123 -8.98 -57.33 REMARK 500 LEU A 191 40.34 -109.12 REMARK 500 LEU A 200 -27.84 -30.68 REMARK 500 THR A 221 -76.52 -80.67 REMARK 500 CYS B 47 44.13 -150.89 REMARK 500 ALA B 54 147.33 -173.97 REMARK 500 ASP B 88 -27.49 -18.24 REMARK 500 ASP B 122 -158.80 -144.66 REMARK 500 ASP B 175 -6.02 -60.00 REMARK 500 ALA B 190 -8.81 -56.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: PLS REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: PROTEOLYTIC SITE REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4V07 RELATED DB: PDB REMARK 900 DIMERIC PSEUDORABIES VIRUS PROTEASE PUL26N AT 2.1 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 4V08 RELATED DB: PDB REMARK 900 INHIBITED DIMERIC PSEUDORABIES VIRUS PROTEASE PUL26N AT REMARK 900 2 A RESOLUTION REMARK 900 RELATED ID: 4V0T RELATED DB: PDB REMARK 900 MONOMERIC PSEUDORABIES VIRUS PROTEASE PUL26N AT 2.1 A REMARK 900 RESOLUTION DBREF 4CX8 A 1 224 UNP Q83417 Q83417_9ALPH 1 224 DBREF 4CX8 B 1 224 UNP Q83417 Q83417_9ALPH 1 224 SEQADV 4CX8 MET A -19 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 GLY A -18 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 SER A -17 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 SER A -16 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 HIS A -15 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 HIS A -14 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 HIS A -13 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 HIS A -12 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 HIS A -11 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 HIS A -10 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 SER A -9 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 SER A -8 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 GLY A -7 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 LEU A -6 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 VAL A -5 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 PRO A -4 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 ARG A -3 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 GLY A -2 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 SER A -1 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 HIS A 0 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 MET B -19 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 GLY B -18 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 SER B -17 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 SER B -16 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 HIS B -15 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 HIS B -14 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 HIS B -13 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 HIS B -12 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 HIS B -11 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 HIS B -10 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 SER B -9 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 SER B -8 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 GLY B -7 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 LEU B -6 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 VAL B -5 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 PRO B -4 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 ARG B -3 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 GLY B -2 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 SER B -1 UNP Q83417 EXPRESSION TAG SEQADV 4CX8 HIS B 0 UNP Q83417 EXPRESSION TAG SEQRES 1 A 244 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 244 LEU VAL PRO ARG GLY SER HIS MET GLY PRO VAL TYR VAL SEQRES 3 A 244 SER GLY TYR LEU ALA LEU TYR ASP ARG ASP GLY GLY GLU SEQRES 4 A 244 LEU ALA LEU THR ARG GLU ILE VAL ALA ALA ALA LEU PRO SEQRES 5 A 244 PRO ALA GLY PRO LEU PRO ILE ASN ILE ASP HIS ARG PRO SEQRES 6 A 244 ARG CYS ASP ILE GLY ALA VAL LEU ALA VAL VAL ASP ASP SEQRES 7 A 244 ASP ARG GLY PRO PHE PHE LEU GLY VAL VAL ASN CYS PRO SEQRES 8 A 244 GLN LEU GLY ALA VAL LEU ALA ARG ALA VAL GLY PRO ASP SEQRES 9 A 244 PHE PHE GLY ASP MET ARG LEU SER ASP GLU GLU ARG LEU SEQRES 10 A 244 LEU TYR LEU LEU SER ASN TYR LEU PRO SER ALA SER LEU SEQRES 11 A 244 SER SER ARG ARG LEU ALA PRO GLY GLU ALA PRO ASP GLU SEQRES 12 A 244 THR LEU PHE ALA HIS VAL ALA LEU CYS VAL ILE GLY ARG SEQRES 13 A 244 ARG VAL GLY THR ILE VAL VAL TYR ASP ALA SER PRO GLU SEQRES 14 A 244 ALA ALA VAL ALA PRO PHE ARG GLN LEU SER ALA ARG ALA SEQRES 15 A 244 ARG SER GLU LEU LEU ALA ARG ALA ALA GLU SER PRO ASP SEQRES 16 A 244 ARG GLU ARG VAL TRP HIS MET SER GLU GLU ALA LEU THR SEQRES 17 A 244 ARG ALA LEU LEU SER THR ALA VAL ASN ASN MET LEU LEU SEQRES 18 A 244 ARG ASP ARG TRP GLU LEU VAL ALA ALA ARG ARG ARG GLU SEQRES 19 A 244 ALA GLY VAL ARG GLY HIS THR TYR LEU GLN SEQRES 1 B 244 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 244 LEU VAL PRO ARG GLY SER HIS MET GLY PRO VAL TYR VAL SEQRES 3 B 244 SER GLY TYR LEU ALA LEU TYR ASP ARG ASP GLY GLY GLU SEQRES 4 B 244 LEU ALA LEU THR ARG GLU ILE VAL ALA ALA ALA LEU PRO SEQRES 5 B 244 PRO ALA GLY PRO LEU PRO ILE ASN ILE ASP HIS ARG PRO SEQRES 6 B 244 ARG CYS ASP ILE GLY ALA VAL LEU ALA VAL VAL ASP ASP SEQRES 7 B 244 ASP ARG GLY PRO PHE PHE LEU GLY VAL VAL ASN CYS PRO SEQRES 8 B 244 GLN LEU GLY ALA VAL LEU ALA ARG ALA VAL GLY PRO ASP SEQRES 9 B 244 PHE PHE GLY ASP MET ARG LEU SER ASP GLU GLU ARG LEU SEQRES 10 B 244 LEU TYR LEU LEU SER ASN TYR LEU PRO SER ALA SER LEU SEQRES 11 B 244 SER SER ARG ARG LEU ALA PRO GLY GLU ALA PRO ASP GLU SEQRES 12 B 244 THR LEU PHE ALA HIS VAL ALA LEU CYS VAL ILE GLY ARG SEQRES 13 B 244 ARG VAL GLY THR ILE VAL VAL TYR ASP ALA SER PRO GLU SEQRES 14 B 244 ALA ALA VAL ALA PRO PHE ARG GLN LEU SER ALA ARG ALA SEQRES 15 B 244 ARG SER GLU LEU LEU ALA ARG ALA ALA GLU SER PRO ASP SEQRES 16 B 244 ARG GLU ARG VAL TRP HIS MET SER GLU GLU ALA LEU THR SEQRES 17 B 244 ARG ALA LEU LEU SER THR ALA VAL ASN ASN MET LEU LEU SEQRES 18 B 244 ARG ASP ARG TRP GLU LEU VAL ALA ALA ARG ARG ARG GLU SEQRES 19 B 244 ALA GLY VAL ARG GLY HIS THR TYR LEU GLN FORMUL 3 HOH *49(H2 O) HELIX 1 1 THR A 23 LEU A 31 1 9 HELIX 2 2 GLN A 72 GLY A 82 1 11 HELIX 3 3 SER A 92 LEU A 105 1 14 HELIX 4 4 SER A 147 ALA A 153 1 7 HELIX 5 5 SER A 159 GLU A 172 1 14 HELIX 6 6 SER A 183 LEU A 191 1 9 HELIX 7 7 MET A 199 GLY A 216 1 18 HELIX 8 8 THR B 23 LEU B 31 1 9 HELIX 9 9 GLN B 72 GLY B 82 1 11 HELIX 10 10 SER B 92 LEU B 105 1 14 HELIX 11 11 SER B 147 ALA B 153 1 7 HELIX 12 12 SER B 159 GLU B 172 1 14 HELIX 13 13 SER B 173 ARG B 178 5 6 HELIX 14 14 SER B 183 LEU B 191 1 9 HELIX 15 15 LEU B 201 GLY B 216 1 16 SHEET 1 AA 8 THR A 140 ILE A 141 0 SHEET 2 AA 8 SER A 107 SER A 112 -1 O ALA A 108 N THR A 140 SHEET 3 AA 8 PHE A 126 CYS A 132 -1 N ALA A 127 O SER A 111 SHEET 4 AA 8 LEU A 37 ILE A 41 1 O PRO A 38 N VAL A 129 SHEET 5 AA 8 ASP A 48 ASP A 57 -1 N ILE A 49 O ILE A 39 SHEET 6 AA 8 PRO A 62 VAL A 68 -1 O PHE A 63 N VAL A 56 SHEET 7 AA 8 VAL A 4 TYR A 9 -1 O VAL A 4 N VAL A 68 SHEET 8 AA 8 VAL A 143 ASP A 145 -1 O VAL A 143 N SER A 7 SHEET 1 BA 8 VAL B 4 TYR B 9 0 SHEET 2 BA 8 GLY B 61 VAL B 68 -1 O PHE B 64 N GLY B 8 SHEET 3 BA 8 ASP B 48 ASP B 58 -1 O ALA B 51 N VAL B 67 SHEET 4 BA 8 PRO B 38 ILE B 41 -1 O ILE B 39 N ILE B 49 SHEET 5 BA 8 PHE B 126 CYS B 132 1 O VAL B 129 N ASN B 40 SHEET 6 BA 8 SER B 107 SER B 112 -1 O SER B 107 N CYS B 132 SHEET 7 BA 8 THR B 140 ASP B 145 -1 O THR B 140 N ALA B 108 SHEET 8 BA 8 VAL B 4 TYR B 9 -1 O TYR B 5 N ASP B 145 CISPEP 1 LEU A 31 PRO A 32 0 0.21 CISPEP 2 LEU B 31 PRO B 32 0 -2.25 SITE 1 PLS 3 HIS A 43 SER A 109 HIS A 128 CRYST1 40.437 101.337 130.078 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024730 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009868 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007688 0.00000 MTRIX1 1 0.606000 -0.143800 0.782400 -26.42000 1 MTRIX2 1 -0.068110 -0.989300 -0.129100 -10.67000 1 MTRIX3 1 0.792600 0.024950 -0.609300 54.19000 1