HEADER OXIDOREDUCTASE 09-APR-14 4CXW TITLE CRYSTAL STRUCTURE OF HUMAN FTO IN COMPLEX WITH SUBFAMILY-SELECTIVE TITLE 2 INHIBITOR 12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE FTO; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DEMETHYLASE, RESIDUES 32-505; COMPND 5 SYNONYM: FAT MASS AND OBESITY-ASSOCIATED PROTEIN; COMPND 6 EC: 1.14.11.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28B KEYWDS OXIDOREDUCTASE, SMALL MOLECULAR PROBE EXPDTA X-RAY DIFFRACTION AUTHOR D.W.TOH,L.SUN,J.TAN,Y.CHEN,L.Z.M.LAU,W.HONG,E.C.Y.WOON,Y.G.GAO REVDAT 5 20-DEC-23 4CXW 1 REMARK LINK REVDAT 4 18-APR-18 4CXW 1 JRNL REVDAT 3 21-JAN-15 4CXW 1 JRNL REVDAT 2 08-OCT-14 4CXW 1 HETNAM REVDAT 1 01-OCT-14 4CXW 0 JRNL AUTH J.D.W.TOH,L.SUN,L.Z.M.LAU,J.TAN,J.J.A.LOW,C.W.Q.TANG, JRNL AUTH 2 E.J.Y.CHEONG,M.J.H.TAN,Y.CHEN,W.HONG,Y.G.GAO,E.C.Y.WOON JRNL TITL A STRATEGY BASED ON NUCLEOTIDE SPECIFICITY LEADS TO A JRNL TITL 2 SUBFAMILY-SELECTIVE AND CELL-ACTIVE INHIBITOR JRNL TITL 3 OFN6-METHYLADENOSINE DEMETHYLASE FTO. JRNL REF CHEM SCI V. 6 112 2015 JRNL REFN ISSN 2041-6520 JRNL PMID 28553460 JRNL DOI 10.1039/C4SC02554G REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.300 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 21902 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1096 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8837 - 6.1938 0.95 2549 133 0.1462 0.1839 REMARK 3 2 6.1938 - 4.9188 0.98 2668 142 0.1689 0.2390 REMARK 3 3 4.9188 - 4.2978 0.94 2502 131 0.1603 0.2332 REMARK 3 4 4.2978 - 3.9052 0.94 2585 140 0.1754 0.2872 REMARK 3 5 3.9052 - 3.6255 0.96 2584 138 0.2056 0.2442 REMARK 3 6 3.6255 - 3.4119 0.97 2628 134 0.2245 0.3003 REMARK 3 7 3.4119 - 3.2411 0.99 2668 140 0.2499 0.3099 REMARK 3 8 3.2411 - 3.1000 0.99 2622 138 0.3430 0.3753 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3623 REMARK 3 ANGLE : 1.438 4905 REMARK 3 CHIRALITY : 0.052 526 REMARK 3 PLANARITY : 0.007 636 REMARK 3 DIHEDRAL : 17.144 1354 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CXW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-APR-14. REMARK 100 THE DEPOSITION ID IS D_1290060269. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22939 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.980 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 2.570 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.65 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4IE5 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE, PH5.6, 10% PEG REMARK 280 3350, 10% T-BUTANOL, 1 MM NISO4, 1.5 MM LIGAND REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 70.80650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.88015 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.93733 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 70.80650 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 40.88015 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.93733 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 70.80650 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 40.88015 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.93733 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 81.76030 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 55.87467 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 81.76030 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 55.87467 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 81.76030 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 55.87467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 SER A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 GLY A 23 REMARK 465 LEU A 24 REMARK 465 VAL A 25 REMARK 465 PRO A 26 REMARK 465 SER A 123 REMARK 465 ASN A 124 REMARK 465 ILE A 125 REMARK 465 LYS A 126 REMARK 465 HIS A 127 REMARK 465 ALA A 163 REMARK 465 ASN A 164 REMARK 465 GLU A 165 REMARK 465 ASP A 166 REMARK 465 ALA A 167 REMARK 465 VAL A 168 REMARK 465 PRO A 169 REMARK 465 LEU A 170 REMARK 465 CYS A 171 REMARK 465 MET A 172 REMARK 465 SER A 173 REMARK 465 ALA A 174 REMARK 465 ASP A 175 REMARK 465 PHE A 176 REMARK 465 PRO A 177 REMARK 465 ARG A 178 REMARK 465 VAL A 179 REMARK 465 GLY A 180 REMARK 465 MET A 181 REMARK 465 GLY A 182 REMARK 465 SER A 183 REMARK 465 SER A 184 REMARK 465 TYR A 185 REMARK 465 ASN A 186 REMARK 465 GLY A 187 REMARK 465 GLN A 188 REMARK 465 MET A 212 REMARK 465 PRO A 213 REMARK 465 TYR A 214 REMARK 465 GLY A 251 REMARK 465 PRO A 252 REMARK 465 GLU A 253 REMARK 465 GLU A 254 REMARK 465 GLU A 255 REMARK 465 SER A 256 REMARK 465 GLU A 257 REMARK 465 ASP A 258 REMARK 465 ASP A 259 REMARK 465 SER A 260 REMARK 465 HIS A 261 REMARK 465 ALA A 503 REMARK 465 LYS A 504 REMARK 465 PRO A 505 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 385 OH TYR A 389 1.67 REMARK 500 O GLN A 385 O HOH A 2047 2.12 REMARK 500 OG1 THR A 320 NH1 ARG A 322 2.14 REMARK 500 O SER A 56 OH TYR A 145 2.16 REMARK 500 OD1 ASP A 353 O HOH A 2042 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 385 CB - CA - C ANGL. DEV. = -24.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 46 48.58 -140.57 REMARK 500 GLU A 64 21.42 -79.70 REMARK 500 ASN A 101 132.20 -36.43 REMARK 500 PRO A 119 69.41 -68.44 REMARK 500 ALA A 198 67.02 -68.65 REMARK 500 ARG A 239 19.34 56.64 REMARK 500 ASP A 299 -127.31 58.76 REMARK 500 TRP A 378 -64.84 -130.61 REMARK 500 GLN A 385 50.54 -95.22 REMARK 500 PRO A 465 -151.48 -76.34 REMARK 500 ASP A 491 57.54 -116.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 67 ALA A 68 -146.85 REMARK 500 LYS A 74 HIS A 75 142.84 REMARK 500 ASP A 491 ILE A 492 144.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1503 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 231 NE2 REMARK 620 2 ASP A 233 OD1 83.5 REMARK 620 3 HIS A 307 NE2 89.7 86.3 REMARK 620 4 6MK A1504 OAB 108.3 161.3 79.5 REMARK 620 5 6MK A1504 NAR 82.2 116.5 154.5 80.2 REMARK 620 6 HOH A2030 O 169.4 88.8 82.5 77.5 107.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6MK A 1504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CXX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN FTO IN COMPLEX WITH ACYLHYDRAZINE REMARK 900 INHIBITOR 16 REMARK 900 RELATED ID: 4CXY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN FTO IN COMPLEX WITH ACYLHYDRAZINE REMARK 900 INHIBITOR 21 REMARK 900 RELATED ID: 4CXZ RELATED DB: PDB REMARK 900 OXIDOREDUCTASE COMPLEX 4 REMARK 900 RELATED ID: 4CY0 RELATED DB: PDB REMARK 900 OXIDOREDUCTASE COMPLEX 5 DBREF 4CXW A 32 505 UNP Q9C0B1 FTO_HUMAN 32 505 SEQADV 4CXW MET A 11 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXW GLY A 12 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXW SER A 13 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXW SER A 14 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXW HIS A 15 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXW HIS A 16 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXW HIS A 17 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXW HIS A 18 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXW HIS A 19 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXW HIS A 20 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXW SER A 21 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXW SER A 22 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXW GLY A 23 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXW LEU A 24 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXW VAL A 25 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXW PRO A 26 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXW ARG A 27 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXW GLY A 28 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXW SER A 29 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXW HIS A 30 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXW MET A 31 UNP Q9C0B1 EXPRESSION TAG SEQRES 1 A 495 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 495 LEU VAL PRO ARG GLY SER HIS MET THR PRO LYS ASP ASP SEQRES 3 A 495 GLU PHE TYR GLN GLN TRP GLN LEU LYS TYR PRO LYS LEU SEQRES 4 A 495 ILE LEU ARG GLU ALA SER SER VAL SER GLU GLU LEU HIS SEQRES 5 A 495 LYS GLU VAL GLN GLU ALA PHE LEU THR LEU HIS LYS HIS SEQRES 6 A 495 GLY CYS LEU PHE ARG ASP LEU VAL ARG ILE GLN GLY LYS SEQRES 7 A 495 ASP LEU LEU THR PRO VAL SER ARG ILE LEU ILE GLY ASN SEQRES 8 A 495 PRO GLY CYS THR TYR LYS TYR LEU ASN THR ARG LEU PHE SEQRES 9 A 495 THR VAL PRO TRP PRO VAL LYS GLY SER ASN ILE LYS HIS SEQRES 10 A 495 THR GLU ALA GLU ILE ALA ALA ALA CYS GLU THR PHE LEU SEQRES 11 A 495 LYS LEU ASN ASP TYR LEU GLN ILE GLU THR ILE GLN ALA SEQRES 12 A 495 LEU GLU GLU LEU ALA ALA LYS GLU LYS ALA ASN GLU ASP SEQRES 13 A 495 ALA VAL PRO LEU CYS MET SER ALA ASP PHE PRO ARG VAL SEQRES 14 A 495 GLY MET GLY SER SER TYR ASN GLY GLN ASP GLU VAL ASP SEQRES 15 A 495 ILE LYS SER ARG ALA ALA TYR ASN VAL THR LEU LEU ASN SEQRES 16 A 495 PHE MET ASP PRO GLN LYS MET PRO TYR LEU LYS GLU GLU SEQRES 17 A 495 PRO TYR PHE GLY MET GLY LYS MET ALA VAL SER TRP HIS SEQRES 18 A 495 HIS ASP GLU ASN LEU VAL ASP ARG SER ALA VAL ALA VAL SEQRES 19 A 495 TYR SER TYR SER CYS GLU GLY PRO GLU GLU GLU SER GLU SEQRES 20 A 495 ASP ASP SER HIS LEU GLU GLY ARG ASP PRO ASP ILE TRP SEQRES 21 A 495 HIS VAL GLY PHE LYS ILE SER TRP ASP ILE GLU THR PRO SEQRES 22 A 495 GLY LEU ALA ILE PRO LEU HIS GLN GLY ASP CYS TYR PHE SEQRES 23 A 495 MET LEU ASP ASP LEU ASN ALA THR HIS GLN HIS CYS VAL SEQRES 24 A 495 LEU ALA GLY SER GLN PRO ARG PHE SER SER THR HIS ARG SEQRES 25 A 495 VAL ALA GLU CYS SER THR GLY THR LEU ASP TYR ILE LEU SEQRES 26 A 495 GLN ARG CYS GLN LEU ALA LEU GLN ASN VAL CYS ASP ASP SEQRES 27 A 495 VAL ASP ASN ASP ASP VAL SER LEU LYS SER PHE GLU PRO SEQRES 28 A 495 ALA VAL LEU LYS GLN GLY GLU GLU ILE HIS ASN GLU VAL SEQRES 29 A 495 GLU PHE GLU TRP LEU ARG GLN PHE TRP PHE GLN GLY ASN SEQRES 30 A 495 ARG TYR ARG LYS CYS THR ASP TRP TRP CYS GLN PRO MET SEQRES 31 A 495 ALA GLN LEU GLU ALA LEU TRP LYS LYS MET GLU GLY VAL SEQRES 32 A 495 THR ASN ALA VAL LEU HIS GLU VAL LYS ARG GLU GLY LEU SEQRES 33 A 495 PRO VAL GLU GLN ARG ASN GLU ILE LEU THR ALA ILE LEU SEQRES 34 A 495 ALA SER LEU THR ALA ARG GLN ASN LEU ARG ARG GLU TRP SEQRES 35 A 495 HIS ALA ARG CYS GLN SER ARG ILE ALA ARG THR LEU PRO SEQRES 36 A 495 ALA ASP GLN LYS PRO GLU CYS ARG PRO TYR TRP GLU LYS SEQRES 37 A 495 ASP ASP ALA SER MET PRO LEU PRO PHE ASP LEU THR ASP SEQRES 38 A 495 ILE VAL SER GLU LEU ARG GLY GLN LEU LEU GLU ALA LYS SEQRES 39 A 495 PRO HET NI A1503 1 HET 6MK A1504 24 HETNAM NI NICKEL (II) ION HETNAM 6MK (2E)-4-[N'-(4-BENZYL-PYRIDINE-3-CARBONYL)-HYDRAZINO]-4- HETNAM 2 6MK OXO-BUT-2-ENOIC ACID HETSYN 6MK SHF-3 FORMUL 2 NI NI 2+ FORMUL 3 6MK C17 H15 N3 O4 FORMUL 4 HOH *65(H2 O) HELIX 1 1 GLU A 37 TYR A 46 1 10 HELIX 2 2 GLU A 53 VAL A 57 5 5 HELIX 3 3 SER A 58 GLU A 67 1 10 HELIX 4 4 GLU A 67 LEU A 72 1 6 HELIX 5 5 GLU A 131 ALA A 159 1 29 HELIX 6 6 VAL A 191 ARG A 196 1 6 HELIX 7 7 ASP A 300 THR A 304 1 5 HELIX 8 8 THR A 330 LEU A 342 1 13 HELIX 9 9 GLU A 360 GLU A 377 1 18 HELIX 10 10 TRP A 378 GLN A 385 1 8 HELIX 11 11 ARG A 388 THR A 393 1 6 HELIX 12 12 TRP A 396 VAL A 421 1 26 HELIX 13 13 PRO A 427 CYS A 456 1 30 HELIX 14 14 SER A 458 THR A 463 1 6 HELIX 15 15 PRO A 465 LYS A 469 5 5 HELIX 16 16 LEU A 489 GLU A 502 1 14 SHEET 1 AA 5 HIS A 30 MET A 31 0 SHEET 2 AA 5 GLY A 284 LEU A 289 1 O GLY A 284 N MET A 31 SHEET 3 AA 5 TRP A 270 ILE A 276 -1 O TRP A 270 N LEU A 289 SHEET 4 AA 5 HIS A 305 LEU A 310 -1 O GLN A 306 N LYS A 275 SHEET 5 AA 5 MET A 226 HIS A 231 -1 N ALA A 227 O VAL A 309 SHEET 1 AB 7 LEU A 49 ARG A 52 0 SHEET 2 AB 7 CYS A 294 MET A 297 -1 O CYS A 294 N ARG A 52 SHEET 3 AB 7 VAL A 242 SER A 248 -1 O VAL A 242 N MET A 297 SHEET 4 AB 7 ARG A 316 ARG A 322 -1 O PHE A 317 N TYR A 247 SHEET 5 AB 7 VAL A 201 MET A 207 -1 O VAL A 201 N ARG A 322 SHEET 6 AB 7 SER A 95 GLY A 100 -1 O SER A 95 N PHE A 206 SHEET 7 AB 7 VAL A 116 PRO A 117 1 O VAL A 116 N GLY A 100 SHEET 1 AC 2 LEU A 82 ILE A 85 0 SHEET 2 AC 2 LYS A 88 LEU A 91 -1 O LYS A 88 N ILE A 85 SHEET 1 AD 2 THR A 105 LYS A 107 0 SHEET 2 AD 2 ARG A 112 PHE A 114 -1 O LEU A 113 N TYR A 106 LINK NE2 HIS A 231 NI NI A1503 1555 1555 2.28 LINK OD1 ASP A 233 NI NI A1503 1555 1555 2.39 LINK NE2 HIS A 307 NI NI A1503 1555 1555 2.40 LINK NI NI A1503 OAB 6MK A1504 1555 1555 2.07 LINK NI NI A1503 NAR 6MK A1504 1555 1555 2.14 LINK NI NI A1503 O HOH A2030 1555 1555 2.74 CISPEP 1 ARG A 473 PRO A 474 0 -7.19 SITE 1 AC1 6 HIS A 231 ASP A 233 HIS A 307 ARG A 322 SITE 2 AC1 6 6MK A1504 HOH A2030 SITE 1 AC2 17 TYR A 106 LEU A 203 HIS A 231 HIS A 232 SITE 2 AC2 17 ASP A 233 GLU A 234 VAL A 244 TYR A 295 SITE 3 AC2 17 HIS A 307 VAL A 309 ARG A 316 SER A 318 SITE 4 AC2 17 ARG A 322 NI A1503 HOH A2012 HOH A2024 SITE 5 AC2 17 HOH A2030 CRYST1 141.613 141.613 83.812 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007061 0.004077 0.000000 0.00000 SCALE2 0.000000 0.008154 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011931 0.00000 TER 3507 GLU A 502 HETATM 3508 NI NI A1503 29.708 -4.951 -27.898 1.00 85.46 NI HETATM 3509 OAA 6MK A1504 34.377 -6.886 -23.394 1.00 84.67 O HETATM 3510 CAS 6MK A1504 34.104 -7.403 -24.497 1.00 80.62 C HETATM 3511 OAD 6MK A1504 34.360 -8.561 -24.899 1.00 74.53 O HETATM 3512 CAE 6MK A1504 33.364 -6.571 -25.445 1.00 79.02 C HETATM 3513 CAF 6MK A1504 32.483 -7.483 -26.218 1.00 78.24 C HETATM 3514 CAT 6MK A1504 31.605 -6.729 -27.148 1.00 88.60 C HETATM 3515 OAB 6MK A1504 31.585 -5.513 -27.226 1.00 97.04 O HETATM 3516 NAQ 6MK A1504 30.747 -7.444 -27.983 1.00 89.66 N HETATM 3517 NAR 6MK A1504 29.901 -6.839 -28.890 1.00 86.99 N HETATM 3518 CAU 6MK A1504 28.694 -7.469 -29.207 1.00 85.59 C HETATM 3519 OAC 6MK A1504 28.423 -8.533 -28.666 1.00 94.39 O HETATM 3520 CAX 6MK A1504 27.729 -6.886 -30.249 1.00 89.02 C HETATM 3521 CAN 6MK A1504 26.333 -6.622 -30.003 1.00 83.24 C HETATM 3522 NAP 6MK A1504 25.474 -6.110 -30.947 1.00 77.82 N HETATM 3523 CAJ 6MK A1504 25.992 -5.836 -32.206 1.00 75.83 C HETATM 3524 CAM 6MK A1504 27.353 -6.062 -32.529 1.00 80.63 C HETATM 3525 CAW 6MK A1504 28.222 -6.607 -31.530 1.00 84.13 C HETATM 3526 CAO 6MK A1504 29.660 -6.896 -31.769 1.00 77.11 C HETATM 3527 CAV 6MK A1504 30.279 -7.033 -33.100 1.00 86.67 C HETATM 3528 CAK 6MK A1504 30.735 -8.281 -33.588 1.00 89.36 C HETATM 3529 CAH 6MK A1504 31.354 -8.378 -34.857 1.00 89.63 C HETATM 3530 CAG 6MK A1504 31.530 -7.230 -35.652 1.00 97.70 C HETATM 3531 CAI 6MK A1504 31.081 -5.979 -35.159 1.00 99.44 C HETATM 3532 CAL 6MK A1504 30.470 -5.890 -33.899 1.00 90.49 C HETATM 3533 O HOH A2001 32.462 -6.468 -9.911 1.00100.61 O HETATM 3534 O HOH A2002 31.323 -12.210 -5.006 1.00119.72 O HETATM 3535 O HOH A2003 23.759 -30.889 -10.795 1.00108.46 O HETATM 3536 O HOH A2004 38.721 -20.694 -19.994 1.00148.11 O HETATM 3537 O HOH A2005 38.269 -18.482 -41.959 1.00101.03 O HETATM 3538 O HOH A2006 31.253 -14.589 -33.391 1.00 87.73 O HETATM 3539 O HOH A2007 27.534 -18.608 -31.860 1.00 84.12 O HETATM 3540 O HOH A2008 26.150 -18.183 -38.124 1.00 81.98 O HETATM 3541 O HOH A2009 25.616 -8.911 -45.456 1.00100.09 O HETATM 3542 O HOH A2010 27.917 -16.659 -46.542 1.00105.65 O HETATM 3543 O HOH A2011 34.073 -10.713 -33.786 1.00 94.71 O HETATM 3544 O HOH A2012 27.986 -9.942 -30.931 1.00 91.80 O HETATM 3545 O HOH A2013 16.633 -21.939 -24.331 1.00 77.98 O HETATM 3546 O HOH A2014 20.006 -13.807 -45.062 1.00 87.14 O HETATM 3547 O HOH A2015 22.957 -19.531 -31.878 1.00 83.59 O HETATM 3548 O HOH A2016 17.384 -25.751 -17.788 1.00 73.40 O HETATM 3549 O HOH A2017 8.069 -25.167 -12.039 1.00 80.80 O HETATM 3550 O HOH A2018 25.671 -30.774 -13.036 1.00128.79 O HETATM 3551 O HOH A2019 17.754 -13.583 -14.683 1.00 75.53 O HETATM 3552 O HOH A2020 19.755 -12.516 -9.891 1.00100.91 O HETATM 3553 O HOH A2021 17.165 -6.560 -11.582 1.00 90.71 O HETATM 3554 O HOH A2022 25.345 17.534 -10.187 1.00 82.42 O HETATM 3555 O HOH A2023 13.356 -4.998 -19.016 1.00 58.73 O HETATM 3556 O HOH A2024 29.688 -9.898 -26.738 1.00 69.58 O HETATM 3557 O HOH A2025 40.866 -6.863 -36.712 1.00 90.14 O HETATM 3558 O HOH A2026 36.528 -3.318 -39.212 1.00102.79 O HETATM 3559 O HOH A2027 45.088 6.101 -36.200 1.00 72.33 O HETATM 3560 O HOH A2028 34.557 -6.456 -35.508 1.00 72.73 O HETATM 3561 O HOH A2029 29.265 0.875 -28.604 1.00 78.25 O HETATM 3562 O HOH A2030 29.263 -5.440 -25.244 1.00 75.61 O HETATM 3563 O HOH A2031 13.447 -1.458 -25.233 1.00 60.01 O HETATM 3564 O HOH A2032 21.326 0.139 -24.398 1.00 60.29 O HETATM 3565 O HOH A2033 24.542 1.327 -21.811 1.00 73.96 O HETATM 3566 O HOH A2034 40.814 -9.196 -19.726 1.00 95.91 O HETATM 3567 O HOH A2035 58.490 3.471 -20.991 1.00 79.43 O HETATM 3568 O HOH A2036 58.615 4.225 -24.131 1.00 88.13 O HETATM 3569 O HOH A2037 47.806 0.396 -21.534 1.00 84.26 O HETATM 3570 O HOH A2038 28.681 1.858 -35.192 1.00 65.97 O HETATM 3571 O HOH A2039 2.902 -13.736 -30.503 1.00 64.15 O HETATM 3572 O HOH A2040 -4.340 -17.839 -42.804 1.00 63.24 O HETATM 3573 O HOH A2041 -8.139 -28.196 -43.060 1.00 84.94 O HETATM 3574 O HOH A2042 -9.688 -29.670 -50.559 1.00113.57 O HETATM 3575 O HOH A2043 -5.784 -28.015 -49.153 1.00103.73 O HETATM 3576 O HOH A2044 -3.201 -15.031 -43.417 1.00 91.74 O HETATM 3577 O HOH A2045 0.626 -19.173 -44.404 1.00 72.41 O HETATM 3578 O HOH A2046 18.855 -22.078 -43.032 1.00 80.16 O HETATM 3579 O HOH A2047 22.509 -24.502 -35.022 1.00135.98 O HETATM 3580 O HOH A2048 27.365 -31.012 -34.043 1.00144.22 O HETATM 3581 O HOH A2049 19.050 -27.094 -29.223 1.00 98.33 O HETATM 3582 O HOH A2050 12.771 -27.931 -25.074 1.00 65.15 O HETATM 3583 O HOH A2051 3.550 -29.135 -33.845 1.00 78.87 O HETATM 3584 O HOH A2052 -13.972 -15.294 -51.629 1.00 98.16 O HETATM 3585 O HOH A2053 -18.784 -16.972 -54.975 1.00 81.97 O HETATM 3586 O HOH A2054 -12.195 -14.175 -60.307 1.00 97.09 O HETATM 3587 O HOH A2055 -10.026 -10.540 -65.553 1.00 94.03 O HETATM 3588 O HOH A2056 1.272 -8.952 -48.628 1.00 84.37 O HETATM 3589 O HOH A2057 8.025 -7.736 -50.963 1.00 98.44 O HETATM 3590 O HOH A2058 20.363 -17.495 -54.862 1.00 95.91 O HETATM 3591 O HOH A2059 15.164 -13.539 -43.656 1.00144.48 O HETATM 3592 O HOH A2060 32.133 -16.683 -49.716 1.00111.33 O HETATM 3593 O HOH A2061 34.946 -27.316 -45.404 1.00136.30 O HETATM 3594 O HOH A2062 8.014 -20.156 -60.483 1.00107.17 O HETATM 3595 O HOH A2063 -2.600 -15.952 -62.982 1.00122.12 O HETATM 3596 O HOH A2064 -8.387 -5.615 -68.064 1.00 91.64 O HETATM 3597 O HOH A2065 17.541 -31.509 -19.404 1.00 82.80 O CONECT 1390 3508 CONECT 1407 3508 CONECT 1914 3508 CONECT 3508 1390 1407 1914 3515 CONECT 3508 3517 3562 CONECT 3509 3510 CONECT 3510 3509 3511 3512 CONECT 3511 3510 CONECT 3512 3510 3513 CONECT 3513 3512 3514 CONECT 3514 3513 3515 3516 CONECT 3515 3508 3514 CONECT 3516 3514 3517 CONECT 3517 3508 3516 3518 CONECT 3518 3517 3519 3520 CONECT 3519 3518 CONECT 3520 3518 3521 3525 CONECT 3521 3520 3522 CONECT 3522 3521 3523 CONECT 3523 3522 3524 CONECT 3524 3523 3525 CONECT 3525 3520 3524 3526 CONECT 3526 3525 3527 CONECT 3527 3526 3528 3532 CONECT 3528 3527 3529 CONECT 3529 3528 3530 CONECT 3530 3529 3531 CONECT 3531 3530 3532 CONECT 3532 3527 3531 CONECT 3562 3508 MASTER 397 0 2 16 16 0 7 6 3596 1 30 39 END